of columns are hidden</li>
<li>annotation label popup menu not providing correct
add/hide/show options when rows are hidden or none are present</li>
- <li>Stockholm format shown in list of readable formats.</li>
+ <li>Stockholm format shown in list of readable formats, and
+ parser copes better with alignments from RFAM.</li>
+ <li>CSV output of consensus only includes the percentage of all
+ symbols if sequence logo display is enabled</li>
+
</ul>
<em>Applet</em>
<ul>
displayed in new alignment window</li>
<li>Jalview slow to complete operations when stdout is flooded
(fix is to close the Jalview console)</li>
- <li>CSV output of consensus only includes the percentage of all
- symbols if sequence logo display is enabled</li>
<li>typo in AlignmentFrame->View->Hide->all but
selected Rregions menu item.</li>
<li>inconsistent group submenu and Format submenu entry 'Un' or