import jalview.api.FeatureRenderer;
import jalview.api.FeaturesDisplayedI;
import jalview.datamodel.AlignmentAnnotation;
-import jalview.datamodel.AlignmentI;
import jalview.datamodel.Annotation;
import jalview.datamodel.ColumnSelection;
import jalview.datamodel.HiddenSequences;
import jalview.datamodel.SequenceFeature;
import jalview.datamodel.SequenceGroup;
import jalview.datamodel.SequenceI;
-import jalview.gui.AlignViewport;
import jalview.json.binding.v1.AlignmentAnnotationPojo;
import jalview.json.binding.v1.AlignmentPojo;
import jalview.json.binding.v1.AlignmentPojo.JalviewBioJsColorSchemeMapper;
return jalviewColor;
}
- public AlignViewportI getViewport(AlignmentI al)
- {
- AlignViewportI viewport = new AlignViewport(al, getColumnSelection());
- viewport.setGlobalColourScheme(getColourScheme());
- viewport.setShowSequenceFeatures(isShowSeqFeatures());
- return viewport;
- }
-
public String getGlobalColorScheme()
{
return globalColorScheme;