private static long lastCheck = -1;
+ /*
+ * absolute time to wait till if we overloaded the REST service
+ */
+ private static long retryAfter;
+
protected volatile boolean inProgress = false;
/**
}
// System.out.println(getClass().getName() + " took "
// + (System.currentTimeMillis() - now) + "ms to fetch");
+
+ checkRateLimits(connection);
BufferedReader reader = null;
reader = new BufferedReader(new InputStreamReader(response, "UTF-8"));
}
/**
+ * Inspect response headers for any sign of server overload and respect any
+ * 'retry-after' directive
+ *
+ * @see https://github.com/Ensembl/ensembl-rest/wiki/Rate-Limits
+ * @param connection
+ */
+ void checkRateLimits(HttpURLConnection connection)
+ {
+ // number of requests allowed per time interval:
+ String limit = connection.getHeaderField("X-RateLimit-Limit");
+ // length of quota time interval in seconds:
+ // String period = connection.getHeaderField("X-RateLimit-Period");
+ // seconds remaining until usage quota is reset:
+ String reset = connection.getHeaderField("X-RateLimit-Reset");
+ // number of requests remaining from quota for current period:
+ String remaining = connection.getHeaderField("X-RateLimit-Remaining");
+ // number of seconds to wait before retrying (if remaining == 0)
+ String retryDelay = connection.getHeaderField("Retry-After");
+
+ // to test:
+ // retryDelay = "5";
+
+ if (retryDelay != null)
+ {
+ System.err.println("Ensembl REST service rate limit exceeded, wait "
+ + retryDelay + " seconds before retrying");
+ try
+ {
+ retryAfter = System.currentTimeMillis()
+ + (1000 * Integer.valueOf(retryDelay));
+ } catch (NumberFormatException e)
+ {
+ System.err.println("Unexpected value for Retry-After: "
+ + retryDelay);
+ }
+ }
+ else
+ {
+ retryAfter = 0;
+ // debug:
+ // System.out.println(String.format(
+ // "%s Ensembl requests remaining of %s (reset in %ss)",
+ // remaining, limit, reset));
+ }
+ }
+ /**
* Rechecks if Ensembl is responding, unless the last check was successful and
* the retest interval has not yet elapsed. Returns true if Ensembl is up,
* else false.
protected boolean isEnsemblAvailable()
{
long now = System.currentTimeMillis();
+
+ /*
+ * check if we are waiting for 'Retry-After' to expire
+ */
+ if (retryAfter > now)
+ {
+ System.err.println("Still " + (1 + (retryAfter - now) / 1000)
+ + " secs to wait before retrying Ensembl");
+ return false;
+ }
+ else
+ {
+ retryAfter = 0;
+ }
+
boolean retest = now - lastCheck > RETEST_INTERVAL;
if (ensemblRestAvailable && !retest)
{