JAL-1759 unused field / methods removed

diff --git a/src/jalview/gui/AppJmol.java b/src/jalview/gui/AppJmol.java
index f05a7d4..ff9b0a7 100644 (file)
--- a/src/jalview/gui/AppJmol.java
+++ b/src/jalview/gui/AppJmol.java
@@ -84,41 +84,8 @@ public class AppJmol extends StructureViewerBase
 
   RenderPanel renderPanel;
 
-  Vector atomsPicked = new Vector();
-
   private boolean addingStructures = false;
 
-  /**
-   * 
-   * @param file
-   * @param id
-   * @param seq
-   * @param ap
-   * @param loadStatus
-   * @param bounds
-   * @deprecated defaults to AppJmol(String[] files, ... , viewid);
-   */
-  @Deprecated
-  public AppJmol(String file, String id, SequenceI[] seq,
-          AlignmentPanel ap, String loadStatus, Rectangle bounds)
-  {
-    this(file, id, seq, ap, loadStatus, bounds, null);
-  }
-
-  /**
-   * @deprecated
-   */
-  @Deprecated
-  public AppJmol(String file, String id, SequenceI[] seq,
-          AlignmentPanel ap, String loadStatus, Rectangle bounds,
-          String viewid)
-  {
-    this(new String[]
-    { file }, new String[]
-    { id }, new SequenceI[][]
-    { seq }, ap, true, true, false, loadStatus, bounds, viewid);
-  }
-
   ViewSelectionMenu seqColourBy;
 
   /**