--- /dev/null
+/**
+ * Data.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package uk.ac.ebi.www;
+
+public class Data implements java.io.Serializable {
+ private java.lang.String type;
+ private java.lang.String content;
+
+ public Data() {
+ }
+
+ public java.lang.String getType() {
+ return type;
+ }
+
+ public void setType(java.lang.String type) {
+ this.type = type;
+ }
+
+ public java.lang.String getContent() {
+ return content;
+ }
+
+ public void setContent(java.lang.String content) {
+ this.content = content;
+ }
+
+ private java.lang.Object __equalsCalc = null;
+ public synchronized boolean equals(java.lang.Object obj) {
+ if (!(obj instanceof Data)) return false;
+ Data other = (Data) obj;
+ if (obj == null) return false;
+ if (this == obj) return true;
+ if (__equalsCalc != null) {
+ return (__equalsCalc == obj);
+ }
+ __equalsCalc = obj;
+ boolean _equals;
+ _equals = true &&
+ ((type==null && other.getType()==null) ||
+ (type!=null &&
+ type.equals(other.getType()))) &&
+ ((content==null && other.getContent()==null) ||
+ (content!=null &&
+ content.equals(other.getContent())));
+ __equalsCalc = null;
+ return _equals;
+ }
+
+ private boolean __hashCodeCalc = false;
+ public synchronized int hashCode() {
+ if (__hashCodeCalc) {
+ return 0;
+ }
+ __hashCodeCalc = true;
+ int _hashCode = 1;
+ if (getType() != null) {
+ _hashCode += getType().hashCode();
+ }
+ if (getContent() != null) {
+ _hashCode += getContent().hashCode();
+ }
+ __hashCodeCalc = false;
+ return _hashCode;
+ }
+
+ // Type metadata
+ private static org.apache.axis.description.TypeDesc typeDesc =
+ new org.apache.axis.description.TypeDesc(Data.class);
+
+ static {
+ org.apache.axis.description.FieldDesc field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("type");
+ field.setXmlName(new javax.xml.namespace.QName("", "type"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ typeDesc.addFieldDesc(field);
+ field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("content");
+ field.setXmlName(new javax.xml.namespace.QName("", "content"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ typeDesc.addFieldDesc(field);
+ };
+
+ /**
+ * Return type metadata object
+ */
+ public static org.apache.axis.description.TypeDesc getTypeDesc() {
+ return typeDesc;
+ }
+
+ /**
+ * Get Custom Serializer
+ */
+ public static org.apache.axis.encoding.Serializer getSerializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanSerializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
+ /**
+ * Get Custom Deserializer
+ */
+ public static org.apache.axis.encoding.Deserializer getDeserializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanDeserializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
+}
--- /dev/null
+/**
+ * InputParams.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package uk.ac.ebi.www;
+
+public class InputParams implements java.io.Serializable {
+ private java.lang.String program;
+ private java.lang.String database;
+ private java.lang.String matrix;
+ private float exp;
+ private boolean echofilter;
+ private java.lang.String filter;
+ private int numal;
+ private int scores;
+ private java.lang.String sensitivity;
+ private java.lang.String sort;
+ private java.lang.String stats;
+ private java.lang.String strand;
+ private java.lang.String outformat;
+ private int topcombon;
+ private boolean async;
+ private java.lang.String email;
+
+ public InputParams() {
+ }
+
+ public java.lang.String getProgram() {
+ return program;
+ }
+
+ public void setProgram(java.lang.String program) {
+ this.program = program;
+ }
+
+ public java.lang.String getDatabase() {
+ return database;
+ }
+
+ public void setDatabase(java.lang.String database) {
+ this.database = database;
+ }
+
+ public java.lang.String getMatrix() {
+ return matrix;
+ }
+
+ public void setMatrix(java.lang.String matrix) {
+ this.matrix = matrix;
+ }
+
+ public float getExp() {
+ return exp;
+ }
+
+ public void setExp(float exp) {
+ this.exp = exp;
+ }
+
+ public boolean isEchofilter() {
+ return echofilter;
+ }
+
+ public void setEchofilter(boolean echofilter) {
+ this.echofilter = echofilter;
+ }
+
+ public java.lang.String getFilter() {
+ return filter;
+ }
+
+ public void setFilter(java.lang.String filter) {
+ this.filter = filter;
+ }
+
+ public int getNumal() {
+ return numal;
+ }
+
+ public void setNumal(int numal) {
+ this.numal = numal;
+ }
+
+ public int getScores() {
+ return scores;
+ }
+
+ public void setScores(int scores) {
+ this.scores = scores;
+ }
+
+ public java.lang.String getSensitivity() {
+ return sensitivity;
+ }
+
+ public void setSensitivity(java.lang.String sensitivity) {
+ this.sensitivity = sensitivity;
+ }
+
+ public java.lang.String getSort() {
+ return sort;
+ }
+
+ public void setSort(java.lang.String sort) {
+ this.sort = sort;
+ }
+
+ public java.lang.String getStats() {
+ return stats;
+ }
+
+ public void setStats(java.lang.String stats) {
+ this.stats = stats;
+ }
+
+ public java.lang.String getStrand() {
+ return strand;
+ }
+
+ public void setStrand(java.lang.String strand) {
+ this.strand = strand;
+ }
+
+ public java.lang.String getOutformat() {
+ return outformat;
+ }
+
+ public void setOutformat(java.lang.String outformat) {
+ this.outformat = outformat;
+ }
+
+ public int getTopcombon() {
+ return topcombon;
+ }
+
+ public void setTopcombon(int topcombon) {
+ this.topcombon = topcombon;
+ }
+
+ public boolean isAsync() {
+ return async;
+ }
+
+ public void setAsync(boolean async) {
+ this.async = async;
+ }
+
+ public java.lang.String getEmail() {
+ return email;
+ }
+
+ public void setEmail(java.lang.String email) {
+ this.email = email;
+ }
+
+ private java.lang.Object __equalsCalc = null;
+ public synchronized boolean equals(java.lang.Object obj) {
+ if (!(obj instanceof InputParams)) return false;
+ InputParams other = (InputParams) obj;
+ if (obj == null) return false;
+ if (this == obj) return true;
+ if (__equalsCalc != null) {
+ return (__equalsCalc == obj);
+ }
+ __equalsCalc = obj;
+ boolean _equals;
+ _equals = true &&
+ ((program==null && other.getProgram()==null) ||
+ (program!=null &&
+ program.equals(other.getProgram()))) &&
+ ((database==null && other.getDatabase()==null) ||
+ (database!=null &&
+ database.equals(other.getDatabase()))) &&
+ ((matrix==null && other.getMatrix()==null) ||
+ (matrix!=null &&
+ matrix.equals(other.getMatrix()))) &&
+ exp == other.getExp() &&
+ echofilter == other.isEchofilter() &&
+ ((filter==null && other.getFilter()==null) ||
+ (filter!=null &&
+ filter.equals(other.getFilter()))) &&
+ numal == other.getNumal() &&
+ scores == other.getScores() &&
+ ((sensitivity==null && other.getSensitivity()==null) ||
+ (sensitivity!=null &&
+ sensitivity.equals(other.getSensitivity()))) &&
+ ((sort==null && other.getSort()==null) ||
+ (sort!=null &&
+ sort.equals(other.getSort()))) &&
+ ((stats==null && other.getStats()==null) ||
+ (stats!=null &&
+ stats.equals(other.getStats()))) &&
+ ((strand==null && other.getStrand()==null) ||
+ (strand!=null &&
+ strand.equals(other.getStrand()))) &&
+ ((outformat==null && other.getOutformat()==null) ||
+ (outformat!=null &&
+ outformat.equals(other.getOutformat()))) &&
+ topcombon == other.getTopcombon() &&
+ async == other.isAsync() &&
+ ((email==null && other.getEmail()==null) ||
+ (email!=null &&
+ email.equals(other.getEmail())));
+ __equalsCalc = null;
+ return _equals;
+ }
+
+ private boolean __hashCodeCalc = false;
+ public synchronized int hashCode() {
+ if (__hashCodeCalc) {
+ return 0;
+ }
+ __hashCodeCalc = true;
+ int _hashCode = 1;
+ if (getProgram() != null) {
+ _hashCode += getProgram().hashCode();
+ }
+ if (getDatabase() != null) {
+ _hashCode += getDatabase().hashCode();
+ }
+ if (getMatrix() != null) {
+ _hashCode += getMatrix().hashCode();
+ }
+ _hashCode += new Float(getExp()).hashCode();
+ _hashCode += new Boolean(isEchofilter()).hashCode();
+ if (getFilter() != null) {
+ _hashCode += getFilter().hashCode();
+ }
+ _hashCode += getNumal();
+ _hashCode += getScores();
+ if (getSensitivity() != null) {
+ _hashCode += getSensitivity().hashCode();
+ }
+ if (getSort() != null) {
+ _hashCode += getSort().hashCode();
+ }
+ if (getStats() != null) {
+ _hashCode += getStats().hashCode();
+ }
+ if (getStrand() != null) {
+ _hashCode += getStrand().hashCode();
+ }
+ if (getOutformat() != null) {
+ _hashCode += getOutformat().hashCode();
+ }
+ _hashCode += getTopcombon();
+ _hashCode += new Boolean(isAsync()).hashCode();
+ if (getEmail() != null) {
+ _hashCode += getEmail().hashCode();
+ }
+ __hashCodeCalc = false;
+ return _hashCode;
+ }
+
+ // Type metadata
+ private static org.apache.axis.description.TypeDesc typeDesc =
+ new org.apache.axis.description.TypeDesc(InputParams.class);
+
+ static {
+ org.apache.axis.description.FieldDesc field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("program");
+ field.setXmlName(new javax.xml.namespace.QName("", "program"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ typeDesc.addFieldDesc(field);
+ field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("database");
+ field.setXmlName(new javax.xml.namespace.QName("", "database"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ typeDesc.addFieldDesc(field);
+ field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("matrix");
+ field.setXmlName(new javax.xml.namespace.QName("", "matrix"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ typeDesc.addFieldDesc(field);
+ field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("exp");
+ field.setXmlName(new javax.xml.namespace.QName("", "exp"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "float"));
+ typeDesc.addFieldDesc(field);
+ field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("echofilter");
+ field.setXmlName(new javax.xml.namespace.QName("", "echofilter"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(field);
+ field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("filter");
+ field.setXmlName(new javax.xml.namespace.QName("", "filter"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ typeDesc.addFieldDesc(field);
+ field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("numal");
+ field.setXmlName(new javax.xml.namespace.QName("", "numal"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "int"));
+ typeDesc.addFieldDesc(field);
+ field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("scores");
+ field.setXmlName(new javax.xml.namespace.QName("", "scores"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "int"));
+ typeDesc.addFieldDesc(field);
+ field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("sensitivity");
+ field.setXmlName(new javax.xml.namespace.QName("", "sensitivity"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ typeDesc.addFieldDesc(field);
+ field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("sort");
+ field.setXmlName(new javax.xml.namespace.QName("", "sort"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ typeDesc.addFieldDesc(field);
+ field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("stats");
+ field.setXmlName(new javax.xml.namespace.QName("", "stats"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ typeDesc.addFieldDesc(field);
+ field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("strand");
+ field.setXmlName(new javax.xml.namespace.QName("", "strand"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ typeDesc.addFieldDesc(field);
+ field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("outformat");
+ field.setXmlName(new javax.xml.namespace.QName("", "outformat"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ typeDesc.addFieldDesc(field);
+ field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("topcombon");
+ field.setXmlName(new javax.xml.namespace.QName("", "topcombon"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "int"));
+ typeDesc.addFieldDesc(field);
+ field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("async");
+ field.setXmlName(new javax.xml.namespace.QName("", "async"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+ typeDesc.addFieldDesc(field);
+ field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("email");
+ field.setXmlName(new javax.xml.namespace.QName("", "email"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ typeDesc.addFieldDesc(field);
+ };
+
+ /**
+ * Return type metadata object
+ */
+ public static org.apache.axis.description.TypeDesc getTypeDesc() {
+ return typeDesc;
+ }
+
+ /**
+ * Get Custom Serializer
+ */
+ public static org.apache.axis.encoding.Serializer getSerializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanSerializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
+ /**
+ * Get Custom Deserializer
+ */
+ public static org.apache.axis.encoding.Deserializer getDeserializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanDeserializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
+}
--- /dev/null
+/**
+ * WSFile.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package uk.ac.ebi.www;
+
+public class WSFile implements java.io.Serializable {
+ private java.lang.String type;
+ private java.lang.String ext;
+
+ public WSFile() {
+ }
+
+ public java.lang.String getType() {
+ return type;
+ }
+
+ public void setType(java.lang.String type) {
+ this.type = type;
+ }
+
+ public java.lang.String getExt() {
+ return ext;
+ }
+
+ public void setExt(java.lang.String ext) {
+ this.ext = ext;
+ }
+
+ private java.lang.Object __equalsCalc = null;
+ public synchronized boolean equals(java.lang.Object obj) {
+ if (!(obj instanceof WSFile)) return false;
+ WSFile other = (WSFile) obj;
+ if (obj == null) return false;
+ if (this == obj) return true;
+ if (__equalsCalc != null) {
+ return (__equalsCalc == obj);
+ }
+ __equalsCalc = obj;
+ boolean _equals;
+ _equals = true &&
+ ((type==null && other.getType()==null) ||
+ (type!=null &&
+ type.equals(other.getType()))) &&
+ ((ext==null && other.getExt()==null) ||
+ (ext!=null &&
+ ext.equals(other.getExt())));
+ __equalsCalc = null;
+ return _equals;
+ }
+
+ private boolean __hashCodeCalc = false;
+ public synchronized int hashCode() {
+ if (__hashCodeCalc) {
+ return 0;
+ }
+ __hashCodeCalc = true;
+ int _hashCode = 1;
+ if (getType() != null) {
+ _hashCode += getType().hashCode();
+ }
+ if (getExt() != null) {
+ _hashCode += getExt().hashCode();
+ }
+ __hashCodeCalc = false;
+ return _hashCode;
+ }
+
+ // Type metadata
+ private static org.apache.axis.description.TypeDesc typeDesc =
+ new org.apache.axis.description.TypeDesc(WSFile.class);
+
+ static {
+ org.apache.axis.description.FieldDesc field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("type");
+ field.setXmlName(new javax.xml.namespace.QName("", "type"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ typeDesc.addFieldDesc(field);
+ field = new org.apache.axis.description.ElementDesc();
+ field.setFieldName("ext");
+ field.setXmlName(new javax.xml.namespace.QName("", "ext"));
+ field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+ typeDesc.addFieldDesc(field);
+ };
+
+ /**
+ * Return type metadata object
+ */
+ public static org.apache.axis.description.TypeDesc getTypeDesc() {
+ return typeDesc;
+ }
+
+ /**
+ * Get Custom Serializer
+ */
+ public static org.apache.axis.encoding.Serializer getSerializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanSerializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
+ /**
+ * Get Custom Deserializer
+ */
+ public static org.apache.axis.encoding.Deserializer getDeserializer(
+ java.lang.String mechType,
+ java.lang.Class _javaType,
+ javax.xml.namespace.QName _xmlType) {
+ return
+ new org.apache.axis.encoding.ser.BeanDeserializer(
+ _javaType, _xmlType, typeDesc);
+ }
+
+}
--- /dev/null
+/**
+ * WSWUBlast.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package uk.ac.ebi.www;
+
+public interface WSWUBlast extends java.rmi.Remote {
+ public java.lang.String runWUBlast(uk.ac.ebi.www.InputParams params, uk.ac.ebi.www.Data[] content) throws java.rmi.RemoteException;
+ public java.lang.String checkStatus(java.lang.String jobid) throws java.rmi.RemoteException;
+ public byte[] poll(java.lang.String jobid, java.lang.String type) throws java.rmi.RemoteException;
+ public uk.ac.ebi.www.WSFile[] getResults(java.lang.String jobid) throws java.rmi.RemoteException;
+ public byte[] test(java.lang.String jobid, java.lang.String type) throws java.rmi.RemoteException;
+ public byte[] polljob(java.lang.String jobid, java.lang.String outformat) throws java.rmi.RemoteException;
+ public byte[] doWUBlast(uk.ac.ebi.www.InputParams params, byte[] content) throws java.rmi.RemoteException;
+}
--- /dev/null
+/**
+ * WSWUBlastService.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package uk.ac.ebi.www;
+
+public interface WSWUBlastService extends javax.xml.rpc.Service {
+ public java.lang.String getWSWUBlastAddress();
+
+ public uk.ac.ebi.www.WSWUBlast getWSWUBlast() throws javax.xml.rpc.ServiceException;
+
+ public uk.ac.ebi.www.WSWUBlast getWSWUBlast(java.net.URL portAddress) throws javax.xml.rpc.ServiceException;
+}
--- /dev/null
+/**
+ * WSWUBlastServiceLocator.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package uk.ac.ebi.www;
+
+public class WSWUBlastServiceLocator extends org.apache.axis.client.Service implements uk.ac.ebi.www.WSWUBlastService {
+
+ // Use to get a proxy class for WSWUBlast
+ private final java.lang.String WSWUBlast_address = "http://www.ebi.ac.uk/~alabarga/cgi-bin/webservices/WSWUBlast";
+
+ public java.lang.String getWSWUBlastAddress() {
+ return WSWUBlast_address;
+ }
+
+ // The WSDD service name defaults to the port name.
+ private java.lang.String WSWUBlastWSDDServiceName = "WSWUBlast";
+
+ public java.lang.String getWSWUBlastWSDDServiceName() {
+ return WSWUBlastWSDDServiceName;
+ }
+
+ public void setWSWUBlastWSDDServiceName(java.lang.String name) {
+ WSWUBlastWSDDServiceName = name;
+ }
+
+ public uk.ac.ebi.www.WSWUBlast getWSWUBlast() throws javax.xml.rpc.ServiceException {
+ java.net.URL endpoint;
+ try {
+ endpoint = new java.net.URL(WSWUBlast_address);
+ }
+ catch (java.net.MalformedURLException e) {
+ return null; // unlikely as URL was validated in WSDL2Java
+ }
+ return getWSWUBlast(endpoint);
+ }
+
+ public uk.ac.ebi.www.WSWUBlast getWSWUBlast(java.net.URL portAddress) throws javax.xml.rpc.ServiceException {
+ try {
+ uk.ac.ebi.www.WSWUBlastSoapBindingStub _stub = new uk.ac.ebi.www.WSWUBlastSoapBindingStub(portAddress, this);
+ _stub.setPortName(getWSWUBlastWSDDServiceName());
+ return _stub;
+ }
+ catch (org.apache.axis.AxisFault e) {
+ return null;
+ }
+ }
+
+ /**
+ * For the given interface, get the stub implementation.
+ * If this service has no port for the given interface,
+ * then ServiceException is thrown.
+ */
+ public java.rmi.Remote getPort(Class serviceEndpointInterface) throws javax.xml.rpc.ServiceException {
+ try {
+ if (uk.ac.ebi.www.WSWUBlast.class.isAssignableFrom(serviceEndpointInterface)) {
+ uk.ac.ebi.www.WSWUBlastSoapBindingStub _stub = new uk.ac.ebi.www.WSWUBlastSoapBindingStub(new java.net.URL(WSWUBlast_address), this);
+ _stub.setPortName(getWSWUBlastWSDDServiceName());
+ return _stub;
+ }
+ }
+ catch (java.lang.Throwable t) {
+ throw new javax.xml.rpc.ServiceException(t);
+ }
+ throw new javax.xml.rpc.ServiceException("There is no stub implementation for the interface: " + (serviceEndpointInterface == null ? "null" : serviceEndpointInterface.getName()));
+ }
+
+ /**
+ * For the given interface, get the stub implementation.
+ * If this service has no port for the given interface,
+ * then ServiceException is thrown.
+ */
+ public java.rmi.Remote getPort(javax.xml.namespace.QName portName, Class serviceEndpointInterface) throws javax.xml.rpc.ServiceException {
+ java.rmi.Remote _stub = getPort(serviceEndpointInterface);
+ ((org.apache.axis.client.Stub) _stub).setPortName(portName);
+ return _stub;
+ }
+
+ public javax.xml.namespace.QName getServiceName() {
+ return new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "WSWUBlastService");
+ }
+
+ private java.util.HashSet ports = null;
+
+ public java.util.Iterator getPorts() {
+ if (ports == null) {
+ ports = new java.util.HashSet();
+ ports.add(new javax.xml.namespace.QName("WSWUBlast"));
+ }
+ return ports.iterator();
+ }
+
+}
--- /dev/null
+/**
+ * WSWUBlastSoapBindingStub.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package uk.ac.ebi.www;
+
+public class WSWUBlastSoapBindingStub extends org.apache.axis.client.Stub implements uk.ac.ebi.www.WSWUBlast {
+ private java.util.Vector cachedSerClasses = new java.util.Vector();
+ private java.util.Vector cachedSerQNames = new java.util.Vector();
+ private java.util.Vector cachedSerFactories = new java.util.Vector();
+ private java.util.Vector cachedDeserFactories = new java.util.Vector();
+
+ public WSWUBlastSoapBindingStub() throws org.apache.axis.AxisFault {
+ this(null);
+ }
+
+ public WSWUBlastSoapBindingStub(java.net.URL endpointURL, javax.xml.rpc.Service service) throws org.apache.axis.AxisFault {
+ this(service);
+ super.cachedEndpoint = endpointURL;
+ }
+
+ public WSWUBlastSoapBindingStub(javax.xml.rpc.Service service) throws org.apache.axis.AxisFault {
+ if (service == null) {
+ super.service = new org.apache.axis.client.Service();
+ } else {
+ super.service = service;
+ }
+ java.lang.Class cls;
+ javax.xml.namespace.QName qName;
+ java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
+ java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
+ java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
+ java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
+ java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
+ java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
+ java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
+ java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
+ qName = new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "inputParams");
+ cachedSerQNames.add(qName);
+ cls = uk.ac.ebi.www.InputParams.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "WSArrayofFile");
+ cachedSerQNames.add(qName);
+ cls = uk.ac.ebi.www.WSFile[].class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(arraysf);
+ cachedDeserFactories.add(arraydf);
+
+ qName = new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "WSArrayofData");
+ cachedSerQNames.add(qName);
+ cls = uk.ac.ebi.www.Data[].class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(arraysf);
+ cachedDeserFactories.add(arraydf);
+
+ qName = new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "data");
+ cachedSerQNames.add(qName);
+ cls = uk.ac.ebi.www.Data.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "WSFile");
+ cachedSerQNames.add(qName);
+ cls = uk.ac.ebi.www.WSFile.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ }
+
+ private org.apache.axis.client.Call createCall() throws java.rmi.RemoteException {
+ try {
+ org.apache.axis.client.Call _call =
+ (org.apache.axis.client.Call) super.service.createCall();
+ if (super.maintainSessionSet) {
+ _call.setMaintainSession(super.maintainSession);
+ }
+ if (super.cachedUsername != null) {
+ _call.setUsername(super.cachedUsername);
+ }
+ if (super.cachedPassword != null) {
+ _call.setPassword(super.cachedPassword);
+ }
+ if (super.cachedEndpoint != null) {
+ _call.setTargetEndpointAddress(super.cachedEndpoint);
+ }
+ if (super.cachedTimeout != null) {
+ _call.setTimeout(super.cachedTimeout);
+ }
+ if (super.cachedPortName != null) {
+ _call.setPortName(super.cachedPortName);
+ }
+ java.util.Enumeration keys = super.cachedProperties.keys();
+ while (keys.hasMoreElements()) {
+ java.lang.String key = (java.lang.String) keys.nextElement();
+ if(_call.isPropertySupported(key))
+ _call.setProperty(key, super.cachedProperties.get(key));
+ // else
+ // _call.setScopedProperty(key, super.cachedProperties.get(key));
+ }
+ // All the type mapping information is registered
+ // when the first call is made.
+ // The type mapping information is actually registered in
+ // the TypeMappingRegistry of the service, which
+ // is the reason why registration is only needed for the first call.
+ synchronized (this) {
+ if (firstCall()) {
+ // must set encoding style before registering serializers
+ _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
+ for (int i = 0; i < cachedSerFactories.size(); ++i) {
+ java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
+ javax.xml.namespace.QName qName =
+ (javax.xml.namespace.QName) cachedSerQNames.get(i);
+ java.lang.Class sf = (java.lang.Class)
+ cachedSerFactories.get(i);
+ java.lang.Class df = (java.lang.Class)
+ cachedDeserFactories.get(i);
+ _call.registerTypeMapping(cls, qName, sf, df, false);
+ }
+ }
+ }
+ return _call;
+ }
+ catch (java.lang.Throwable t) {
+ throw new org.apache.axis.AxisFault("Failure trying to get the Call object", t);
+ }
+ }
+
+ public byte[] poll(java.lang.String jobid, java.lang.String type) throws java.rmi.RemoteException {
+ if (super.cachedEndpoint == null) {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.addParameter(new javax.xml.namespace.QName("", "jobid"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, javax.xml.rpc.ParameterMode.IN);
+ _call.addParameter(new javax.xml.namespace.QName("", "type"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, javax.xml.rpc.ParameterMode.IN);
+ _call.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "base64Binary"), byte[].class);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("http://www.ebi.ac.uk/WSWUBlast#poll");
+ _call.setOperationStyle("rpc");
+ _call.setOperationName(new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "poll"));
+
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[] {jobid, type});
+
+ if (_resp instanceof java.rmi.RemoteException) {
+ throw (java.rmi.RemoteException)_resp;
+ }
+ else {
+ try {
+ return (byte[]) _resp;
+ } catch (java.lang.Exception _exception) {
+ return (byte[]) org.apache.axis.utils.JavaUtils.convert(_resp, byte[].class);
+ }
+ }
+ }
+
+ public java.lang.String runWUBlast(uk.ac.ebi.www.InputParams params, uk.ac.ebi.www.Data[] content) throws java.rmi.RemoteException {
+ if (super.cachedEndpoint == null) {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.addParameter(new javax.xml.namespace.QName("", "params"), new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "inputParams"), uk.ac.ebi.www.InputParams.class, javax.xml.rpc.ParameterMode.IN);
+ _call.addParameter(new javax.xml.namespace.QName("", "content"), new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "WSArrayofData"), uk.ac.ebi.www.Data[].class, javax.xml.rpc.ParameterMode.IN);
+ _call.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("http://www.ebi.ac.uk/WSWUBlast#runWUBlast");
+ _call.setOperationStyle("rpc");
+ _call.setOperationName(new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "runWUBlast"));
+
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[] {params, content});
+
+ if (_resp instanceof java.rmi.RemoteException) {
+ throw (java.rmi.RemoteException)_resp;
+ }
+ else {
+ try {
+ return (java.lang.String) _resp;
+ } catch (java.lang.Exception _exception) {
+ return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp, java.lang.String.class);
+ }
+ }
+ }
+
+ public byte[] test(java.lang.String jobid, java.lang.String type) throws java.rmi.RemoteException {
+ if (super.cachedEndpoint == null) {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.addParameter(new javax.xml.namespace.QName("", "jobid"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, javax.xml.rpc.ParameterMode.IN);
+ _call.addParameter(new javax.xml.namespace.QName("", "type"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, javax.xml.rpc.ParameterMode.IN);
+ _call.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "base64Binary"), byte[].class);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("http://www.ebi.ac.uk/WSWUBlast#test");
+ _call.setOperationStyle("rpc");
+ _call.setOperationName(new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "test"));
+
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[] {jobid, type});
+
+ if (_resp instanceof java.rmi.RemoteException) {
+ throw (java.rmi.RemoteException)_resp;
+ }
+ else {
+ try {
+ return (byte[]) _resp;
+ } catch (java.lang.Exception _exception) {
+ return (byte[]) org.apache.axis.utils.JavaUtils.convert(_resp, byte[].class);
+ }
+ }
+ }
+
+ public java.lang.String checkStatus(java.lang.String jobid) throws java.rmi.RemoteException {
+ if (super.cachedEndpoint == null) {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.addParameter(new javax.xml.namespace.QName("", "jobid"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, javax.xml.rpc.ParameterMode.IN);
+ _call.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("http://www.ebi.ac.uk/WSWUBlast#checkStatus");
+ _call.setOperationStyle("rpc");
+ _call.setOperationName(new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "checkStatus"));
+
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[] {jobid});
+
+ if (_resp instanceof java.rmi.RemoteException) {
+ throw (java.rmi.RemoteException)_resp;
+ }
+ else {
+ try {
+ return (java.lang.String) _resp;
+ } catch (java.lang.Exception _exception) {
+ return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp, java.lang.String.class);
+ }
+ }
+ }
+
+ public uk.ac.ebi.www.WSFile[] getResults(java.lang.String jobid) throws java.rmi.RemoteException {
+ if (super.cachedEndpoint == null) {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.addParameter(new javax.xml.namespace.QName("", "jobid"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, javax.xml.rpc.ParameterMode.IN);
+ _call.setReturnType(new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "WSArrayofFile"), uk.ac.ebi.www.WSFile[].class);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("http://www.ebi.ac.uk/WSWUBlast#getResults");
+ _call.setOperationStyle("rpc");
+ _call.setOperationName(new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "getResults"));
+
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[] {jobid});
+
+ if (_resp instanceof java.rmi.RemoteException) {
+ throw (java.rmi.RemoteException)_resp;
+ }
+ else {
+ try {
+ return (uk.ac.ebi.www.WSFile[]) _resp;
+ } catch (java.lang.Exception _exception) {
+ return (uk.ac.ebi.www.WSFile[]) org.apache.axis.utils.JavaUtils.convert(_resp, uk.ac.ebi.www.WSFile[].class);
+ }
+ }
+ }
+
+ public byte[] polljob(java.lang.String jobid, java.lang.String outformat) throws java.rmi.RemoteException {
+ if (super.cachedEndpoint == null) {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.addParameter(new javax.xml.namespace.QName("", "jobid"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, javax.xml.rpc.ParameterMode.IN);
+ _call.addParameter(new javax.xml.namespace.QName("", "outformat"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, javax.xml.rpc.ParameterMode.IN);
+ _call.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "base64Binary"), byte[].class);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("http://www.ebi.ac.uk/WSWUBlast#polljob");
+ _call.setOperationStyle("rpc");
+ _call.setOperationName(new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "polljob"));
+
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[] {jobid, outformat});
+
+ if (_resp instanceof java.rmi.RemoteException) {
+ throw (java.rmi.RemoteException)_resp;
+ }
+ else {
+ try {
+ return (byte[]) _resp;
+ } catch (java.lang.Exception _exception) {
+ return (byte[]) org.apache.axis.utils.JavaUtils.convert(_resp, byte[].class);
+ }
+ }
+ }
+
+ public byte[] doWUBlast(uk.ac.ebi.www.InputParams params, byte[] content) throws java.rmi.RemoteException {
+ if (super.cachedEndpoint == null) {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.addParameter(new javax.xml.namespace.QName("", "params"), new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "inputParams"), uk.ac.ebi.www.InputParams.class, javax.xml.rpc.ParameterMode.IN);
+ _call.addParameter(new javax.xml.namespace.QName("", "content"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "base64Binary"), byte[].class, javax.xml.rpc.ParameterMode.IN);
+ _call.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "base64Binary"), byte[].class);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("http://www.ebi.ac.uk/WSWUBlast#doWUBlast");
+ _call.setOperationStyle("rpc");
+ _call.setOperationName(new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "doWUBlast"));
+
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[] {params, content});
+
+ if (_resp instanceof java.rmi.RemoteException) {
+ throw (java.rmi.RemoteException)_resp;
+ }
+ else {
+ try {
+ return (byte[]) _resp;
+ } catch (java.lang.Exception _exception) {
+ return (byte[]) org.apache.axis.utils.JavaUtils.convert(_resp, byte[].class);
+ }
+ }
+ }
+
+}
git://source.jalview.org / jalview.git / commitdiff