package jalview.workers;
+import java.util.Hashtable;
+
import jalview.analysis.AAFrequency;
import jalview.api.AlignViewportI;
import jalview.api.AlignmentViewPanel;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceI;
-import java.util.Hashtable;
-
/**
* A thread to recompute the consensus of the cDNA complement for a linked
* protein alignment.
*/
package jalview.workers;
+import java.util.Hashtable;
+
import jalview.analysis.AAFrequency;
import jalview.api.AlignCalcWorkerI;
import jalview.api.AlignViewportI;
import jalview.datamodel.SequenceI;
import jalview.schemes.ColourSchemeI;
-import java.util.Hashtable;
-
public class ConsensusThread extends AlignCalcWorker implements
AlignCalcWorkerI
{
calcMan.workerComplete(this);
return;
}
+
eraseConsensus(aWidth);
- // long now = System.currentTimeMillis();
computeConsensus(alignment);
updateResultAnnotation(true);
- // System.out.println(System.currentTimeMillis() - now);
if (ap != null)
{