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ensure selseq is trimmed to just sequences included in view (either all
authorjprocter <jprocter@compbio.dundee.ac.uk>
Wed, 6 Jul 2011 09:48:55 +0000 (10:48 +0100)
committerjprocter <jprocter@compbio.dundee.ac.uk>
Wed, 6 Jul 2011 09:52:52 +0000 (10:52 +0100)
or just selectedRegionOnly) (JAL-724)

src/jalview/datamodel/AlignmentView.java patch | blob | history

diff --git a/src/jalview/datamodel/AlignmentView.java b/src/jalview/datamodel/AlignmentView.java
index 2a93861..ebe8301 100644 (file)
--- a/src/jalview/datamodel/AlignmentView.java
+++ b/src/jalview/datamodel/AlignmentView.java
@@ -107,7 +107,7 @@ public class AlignmentView
     {\r
       Vector sel = selection.getSequences(null);\r
       this.selected = new Vector();\r
-      selseqs = selection.getSequencesInOrder(alignment, false);\r
+      selseqs = selection.getSequencesInOrder(alignment, selectedRegionOnly);\r
     }\r
     else\r
     {\r