Neeed to know protocol for annotation loading

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index af01a99..4efab35 100755 (executable)
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -374,7 +374,8 @@ public class JalviewLite extends Applet
 \r
                new AnnotationFile().readAnnotationFile(\r
                    currentAlignFrame.viewport.getAlignment(),\r
-                   param);\r
+                   param,\r
+                   protocol);\r
 \r
                currentAlignFrame.alignPanel.fontChanged();\r
                currentAlignFrame.alignPanel.setScrollValues(0,0);\r

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 48758cd..bb722a5 100755 (executable)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -3287,7 +3287,7 @@ public void drop(DropTargetDropEvent evt)
       }
 
       boolean isAnnotation = new AnnotationFile().readAnnotationFile(viewport.
-          alignment, file);
+          alignment, file, protocol);
 
       if (!isAnnotation)
       {