<li>JPred3 web service</li>
<li>Generalised database reference retrieval and validation to
all fetchable databases</li>
+ <li>Fetch sequences from DAS sources supporting the sequence command</li>
+ <li>Sequence Fetcher GUI provides example accession numbers and 'clear' button</li>
<li>Application command line
<ul>
<li>-tree parameter to open trees (introduced for passing from
<li>Debug flag for javacc</li>
<li>.jalview_properties file is documented (slightly) in
jalview.bin.Cache</li>
+ <li>Group colour can be given as an RGB triplet which is used to colour all non-gap characters</li>
+ <!-- <li>DAS Sequence Retrieval (in progress)</li> -->
</ul>
</td>
<td>
null pointer exceptions</li>
<li>Secondary structure lines are drawn starting from first
column of alignment</li>
+ <li>Uniprot XML import updated for new schema release in July 2008</li>
+ <!--<li>DAS Histogram Features display ( (Prlic et al) </li>-->
+
</ul>
</td>
</tr>
-<html>\r
-<head>\r
-<title>What's new ?</title>\r
-</head>\r
-<body>\r
-<p><strong>What's new ?</strong></p>\r
-\r
-<p><strong>Jalview Version 2.3</strong></p>\r
-<ul>\r
- Jmol 11.0.2 integration<br>\r
- PDB views stored in Jalview XML files<br>\r
- Slide sequences<br>\r
- Edit sequence in place<br>\r
- EMBL CDS features<br>\r
- DAS Feature mapping<br>\r
- Feature ordering<br>\r
- Alignment Properties<br>\r
- Annotation Scores<br>\r
- Sort by scores<br>\r
- Feature/annotation editing in applet<br>\r
-</ul>\r
-<p><strong>Issues Resolved</strong></p>\r
-<ul>\r
- Headless state operation in 2.2.1 <br>\r
- Incorrect and unstable DNA pairwise alignment <br>\r
- Cut and paste of sequences with annotation <br>\r
- Feature group display state in XML<br>\r
- Feature ordering in XML<br>\r
- 2.2.1 applet had no feature transparency<br>\r
- Number pad keys can be used in cursor mode<br>\r
- Structure Viewer mirror image resolved</p>\r
- </ul>\r
-<p> </p>\r
-<p>See the <a href="releases.html">Release History</a> page for\r
-details of all new features and resolved issues.</p>\r
-</body>\r
-</html>\r
+<html>
+<head>
+<title>What's new ?</title>
+</head>
+<body>
+<p><strong>What's new ?</strong></p>
+<p><strong>Jalview Version 2.4</strong></p>
+<ul>
+ VAMSAS Interoperation Client<br>
+ DAS Sequence Fetching<br>
+ DNA/Protein Product traversal (Experimental)</br>
+ .. (more to come)
+</ul>
+<p><strong>Issues Resolved</strong></p>
+<ul>
+ .. (more to come)
+</ul>
+
+<--<p><strong>Jalview Version 2.3</strong></p>
+<ul>
+ Jmol 11.0.2 integration<br>
+ PDB views stored in Jalview XML files<br>
+ Slide sequences<br>
+ Edit sequence in place<br>
+ EMBL CDS features<br>
+ DAS Feature mapping<br>
+ Feature ordering<br>
+ Alignment Properties<br>
+ Annotation Scores<br>
+ Sort by scores<br>
+ Feature/annotation editing in applet<br>
+</ul>
+<p><strong>Issues Resolved</strong></p>
+<ul>
+ Headless state operation in 2.2.1 <br>
+ Incorrect and unstable DNA pairwise alignment <br>
+ Cut and paste of sequences with annotation <br>
+ Feature group display state in XML<br>
+ Feature ordering in XML<br>
+ 2.2.1 applet had no feature transparency<br>
+ Number pad keys can be used in cursor mode<br>
+ Structure Viewer mirror image resolved</p>
+ </ul>-->
+<p> </p>
+<p>See the <a href="releases.html">Release History</a> page for
+details of all new features and resolved issues.</p>
+</body>
+</html>
git://source.jalview.org / jalview.git / commitdiff