format changes

diff --git a/src/jalview/jbappletgui/GTreePanel.java b/src/jalview/jbappletgui/GTreePanel.java
index 3a7112a..f0e28e1 100755 (executable)
--- a/src/jalview/jbappletgui/GTreePanel.java
+++ b/src/jalview/jbappletgui/GTreePanel.java
@@ -1,136 +1,136 @@
-package jalview.jbappletgui;
-
-import java.awt.*;
-import java.awt.event.*;
-
-public class GTreePanel extends Frame
-{
-  BorderLayout borderLayout1 = new BorderLayout();
-  protected ScrollPane scrollPane = new ScrollPane();
-  MenuBar jMenuBar1 = new MenuBar();
-  Menu jMenu2 = new Menu();
-  protected MenuItem fontSize = new MenuItem();
-  protected CheckboxMenuItem bootstrapMenu = new CheckboxMenuItem();
-  protected CheckboxMenuItem distanceMenu = new CheckboxMenuItem();
-  protected CheckboxMenuItem placeholdersMenu = new CheckboxMenuItem();
-  protected CheckboxMenuItem fitToWindow = new CheckboxMenuItem();
-  Menu fileMenu = new Menu();
-  MenuItem newickOutput = new MenuItem();
-
-  public GTreePanel()
-  {
-    try
-    {
-      jbInit();
-      this.setMenuBar(jMenuBar1);
-    }
-    catch(Exception e)
-    {
-      e.printStackTrace();
-    }
-
-  }
-  private void jbInit() throws Exception
-  {
-    setLayout(borderLayout1);
-    this.setBackground(Color.white);
-    this.setFont(new java.awt.Font("Verdana", 0, 12));
-    jMenu2.setLabel("View");
-    fontSize.setLabel("Font Size - 12");
-    fontSize.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        fontSize_actionPerformed(e);
-      }
-    });
-    bootstrapMenu.setLabel("Show Bootstrap values");
-    bootstrapMenu.addItemListener(new java.awt.event.ItemListener()
-    {
-      public void itemStateChanged(ItemEvent e)
-      {
-        bootstrapMenu_actionPerformed(null);
-      }
-    });
-    distanceMenu.setLabel("Show Distances");
-    distanceMenu.addItemListener(new java.awt.event.ItemListener()
-    {
-      public void itemStateChanged(ItemEvent e)
-      {
-        distanceMenu_actionPerformed(null);
-      }
-    });
-    placeholdersMenu.setLabel("Mark Unassociated Leaves");
-    placeholdersMenu.addItemListener(new java.awt.event.ItemListener()
-    {
-      public void itemStateChanged(ItemEvent e)
-      {
-        placeholdersMenu_actionPerformed(null);
-      }
-    });
-    fitToWindow.setState(true);
-    fitToWindow.setLabel("Fit to window");
-    fitToWindow.addItemListener(new java.awt.event.ItemListener()
-    {
-      public void itemStateChanged(ItemEvent e)
-      {
-        fitToWindow_actionPerformed(null);
-      }
-    });
-    fileMenu.setLabel("File");
-    newickOutput.setLabel("Newick format");
-    newickOutput.addActionListener(new ActionListener()
-    {
-      public void actionPerformed(ActionEvent actionEvent)
-      {
-        newickOutput_actionPerformed(actionEvent);
-      }
-    });
-    add(scrollPane, BorderLayout.CENTER);
-    jMenuBar1.add(fileMenu);
-    jMenuBar1.add(jMenu2);
-    jMenu2.add(fitToWindow);
-    jMenu2.add(fontSize);
-    jMenu2.add(distanceMenu);
-    jMenu2.add(bootstrapMenu);
-    jMenu2.add(placeholdersMenu);
-    fileMenu.add(newickOutput);
-  }
-
-
-  protected void printMenu_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void fontSize_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void distanceMenu_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void bootstrapMenu_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void placeholdersMenu_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void fitToWindow_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  public void newickOutput_actionPerformed(ActionEvent actionEvent)
-  {
-
-  }
-
-}
+package jalview.jbappletgui;\r
+\r
+import java.awt.*;\r
+import java.awt.event.*;\r
+\r
+public class GTreePanel extends Frame\r
+{\r
+  BorderLayout borderLayout1 = new BorderLayout();\r
+  protected ScrollPane scrollPane = new ScrollPane();\r
+  MenuBar jMenuBar1 = new MenuBar();\r
+  Menu jMenu2 = new Menu();\r
+  protected MenuItem fontSize = new MenuItem();\r
+  protected CheckboxMenuItem bootstrapMenu = new CheckboxMenuItem();\r
+  protected CheckboxMenuItem distanceMenu = new CheckboxMenuItem();\r
+  protected CheckboxMenuItem placeholdersMenu = new CheckboxMenuItem();\r
+  protected CheckboxMenuItem fitToWindow = new CheckboxMenuItem();\r
+  Menu fileMenu = new Menu();\r
+  MenuItem newickOutput = new MenuItem();\r
+\r
+  public GTreePanel()\r
+  {\r
+    try\r
+    {\r
+      jbInit();\r
+      this.setMenuBar(jMenuBar1);\r
+    }\r
+    catch(Exception e)\r
+    {\r
+      e.printStackTrace();\r
+    }\r
+\r
+  }\r
+  private void jbInit() throws Exception\r
+  {\r
+    setLayout(borderLayout1);\r
+    this.setBackground(Color.white);\r
+    this.setFont(new java.awt.Font("Verdana", 0, 12));\r
+    jMenu2.setLabel("View");\r
+    fontSize.setLabel("Font Size - 12");\r
+    fontSize.addActionListener(new java.awt.event.ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        fontSize_actionPerformed(e);\r
+      }\r
+    });\r
+    bootstrapMenu.setLabel("Show Bootstrap Values");\r
+    bootstrapMenu.addItemListener(new java.awt.event.ItemListener()\r
+    {\r
+      public void itemStateChanged(ItemEvent e)\r
+      {\r
+        bootstrapMenu_actionPerformed(null);\r
+      }\r
+    });\r
+    distanceMenu.setLabel("Show Distances");\r
+    distanceMenu.addItemListener(new java.awt.event.ItemListener()\r
+    {\r
+      public void itemStateChanged(ItemEvent e)\r
+      {\r
+        distanceMenu_actionPerformed(null);\r
+      }\r
+    });\r
+    placeholdersMenu.setLabel("Mark Unassociated Leaves");\r
+    placeholdersMenu.addItemListener(new java.awt.event.ItemListener()\r
+    {\r
+      public void itemStateChanged(ItemEvent e)\r
+      {\r
+        placeholdersMenu_actionPerformed(null);\r
+      }\r
+    });\r
+    fitToWindow.setState(true);\r
+    fitToWindow.setLabel("Fit To Window");\r
+    fitToWindow.addItemListener(new java.awt.event.ItemListener()\r
+    {\r
+      public void itemStateChanged(ItemEvent e)\r
+      {\r
+        fitToWindow_actionPerformed(null);\r
+      }\r
+    });\r
+    fileMenu.setLabel("File");\r
+    newickOutput.setLabel("Newick Format");\r
+    newickOutput.addActionListener(new ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent actionEvent)\r
+      {\r
+        newickOutput_actionPerformed(actionEvent);\r
+      }\r
+    });\r
+    add(scrollPane, BorderLayout.CENTER);\r
+    jMenuBar1.add(fileMenu);\r
+    jMenuBar1.add(jMenu2);\r
+    jMenu2.add(fitToWindow);\r
+    jMenu2.add(fontSize);\r
+    jMenu2.add(distanceMenu);\r
+    jMenu2.add(bootstrapMenu);\r
+    jMenu2.add(placeholdersMenu);\r
+    fileMenu.add(newickOutput);\r
+  }\r
+\r
+\r
+  protected void printMenu_actionPerformed(ActionEvent e)\r
+  {\r
+\r
+  }\r
+\r
+  protected void fontSize_actionPerformed(ActionEvent e)\r
+  {\r
+\r
+  }\r
+\r
+  protected void distanceMenu_actionPerformed(ActionEvent e)\r
+  {\r
+\r
+  }\r
+\r
+  protected void bootstrapMenu_actionPerformed(ActionEvent e)\r
+  {\r
+\r
+  }\r
+\r
+  protected void placeholdersMenu_actionPerformed(ActionEvent e)\r
+  {\r
+\r
+  }\r
+\r
+  protected void fitToWindow_actionPerformed(ActionEvent e)\r
+  {\r
+\r
+  }\r
+\r
+  public void newickOutput_actionPerformed(ActionEvent actionEvent)\r
+  {\r
+\r
+  }\r
+\r
+}\r