in progress

diff --git a/forester/java/src/org/forester/archaeopteryx/AptxUtil.java b/forester/java/src/org/forester/archaeopteryx/AptxUtil.java
index d6824e9..c0d0e12 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/AptxUtil.java
+++ b/forester/java/src/org/forester/archaeopteryx/AptxUtil.java
@@ -62,7 +62,6 @@ import javax.imageio.stream.ImageOutputStream;
 import javax.swing.JOptionPane;
 import javax.swing.text.MaskFormatter;
 
-import org.forester.archaeopteryx.Options.PHYLOGENY_DISPLAY_TYPE;
 import org.forester.io.parsers.PhylogenyParser;
 import org.forester.io.parsers.nexus.NexusPhylogeniesParser;
 import org.forester.io.parsers.nhx.NHXParser;

diff --git a/forester/java/src/org/forester/archaeopteryx/MainFrameApplication.java b/forester/java/src/org/forester/archaeopteryx/MainFrameApplication.java
index e44430c..9488a1c 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/MainFrameApplication.java
+++ b/forester/java/src/org/forester/archaeopteryx/MainFrameApplication.java
@@ -77,7 +77,6 @@ import org.forester.io.parsers.nhx.NHXParser;
 import org.forester.io.parsers.nhx.NHXParser.TAXONOMY_EXTRACTION;
 import org.forester.io.parsers.phyloxml.PhyloXmlDataFormatException;
 import org.forester.io.parsers.phyloxml.PhyloXmlParser;
-import org.forester.io.parsers.phyloxml.PhyloXmlUtil;
 import org.forester.io.parsers.tol.TolParser;
 import org.forester.io.parsers.util.ParserUtils;
 import org.forester.io.writers.SequenceWriter;

diff --git a/forester/java/src/org/forester/archaeopteryx/NodePanel.java b/forester/java/src/org/forester/archaeopteryx/NodePanel.java
index b3df423..ed7ed0b 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/NodePanel.java
+++ b/forester/java/src/org/forester/archaeopteryx/NodePanel.java
@@ -32,7 +32,6 @@ import java.awt.event.ActionEvent;
 import java.awt.event.ActionListener;
 import java.util.List;
 import java.util.Map;
-import java.util.SortedMap;
 import java.util.SortedSet;
 
 import javax.swing.BoxLayout;

diff --git a/forester/java/src/org/forester/archaeopteryx/TreePanel.java b/forester/java/src/org/forester/archaeopteryx/TreePanel.java
index 0b07a70..6af9218 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/TreePanel.java
+++ b/forester/java/src/org/forester/archaeopteryx/TreePanel.java
@@ -99,7 +99,6 @@ import org.forester.archaeopteryx.ControlPanel.NodeClickAction;
 import org.forester.archaeopteryx.Options.CLADOGRAM_TYPE;
 import org.forester.archaeopteryx.Options.NODE_LABEL_DIRECTION;
 import org.forester.archaeopteryx.Options.PHYLOGENY_GRAPHICS_TYPE;
-import org.forester.archaeopteryx.Options.PHYLOGENY_DISPLAY_TYPE;
 import org.forester.archaeopteryx.phylogeny.data.RenderableDomainArchitecture;
 import org.forester.archaeopteryx.phylogeny.data.RenderableMsaSequence;
 import org.forester.archaeopteryx.phylogeny.data.RenderableVector;
@@ -122,8 +121,6 @@ import org.forester.phylogeny.data.NodeVisualData;
 import org.forester.phylogeny.data.NodeVisualData.NodeFill;
 import org.forester.phylogeny.data.NodeVisualData.NodeShape;
 import org.forester.phylogeny.data.PhylogenyDataUtil;
-import org.forester.phylogeny.data.PropertiesList;
-import org.forester.phylogeny.data.Property;
 import org.forester.phylogeny.data.ProteinDomain;
 import org.forester.phylogeny.data.Sequence;
 import org.forester.phylogeny.data.SequenceRelation;
@@ -131,7 +128,6 @@ import org.forester.phylogeny.data.Taxonomy;
 import org.forester.phylogeny.data.Uri;
 import org.forester.phylogeny.iterators.PhylogenyNodeIterator;
 import org.forester.phylogeny.iterators.PreorderTreeIterator;
-import org.forester.util.BasicDescriptiveStatistics;
 import org.forester.util.DescriptiveStatistics;
 import org.forester.util.ForesterConstants;
 import org.forester.util.ForesterUtil;

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/data/TaxonomyParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/data/TaxonomyParser.java
index d226801..f55028f 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/data/TaxonomyParser.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/data/TaxonomyParser.java
@@ -25,8 +25,6 @@
 
 package org.forester.io.parsers.phyloxml.data;
 
-import java.util.Arrays;
-
 import org.forester.io.parsers.phyloxml.PhyloXmlDataFormatException;
 import org.forester.io.parsers.phyloxml.PhyloXmlMapping;
 import org.forester.io.parsers.phyloxml.XmlElement;