delete gaps bug fixed

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index c0216aa..3336bb6 100755 (executable)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -280,7 +280,7 @@ public class AlignFrame extends GAlignFrame
       current = viewport.getAlignment().getSequenceAt(i);\r
       jSize = current.getLength();\r
       for (int j=0; j < jSize; j++)\r
-        if(jalview.util.Comparison.isGap(current.getCharAt(i)))\r
+        if(jalview.util.Comparison.isGap(current.getCharAt(j)))\r
         {\r
           current.deleteCharAt(j);\r
           j--;\r