Add lowercase nucleotides to nucleotideHash

diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java
index 8b1d92b..f92bfd1 100755 (executable)
--- a/src/jalview/schemes/ResidueProperties.java
+++ b/src/jalview/schemes/ResidueProperties.java
@@ -91,6 +91,11 @@ public class ResidueProperties
     nucleotideHash.put("G", new Integer(2));\r
     nucleotideHash.put("T", new Integer(3));\r
     nucleotideHash.put("U", new Integer(4));\r
+    nucleotideHash.put("a", new Integer(0));\r
+    nucleotideHash.put("c", new Integer(1));\r
+    nucleotideHash.put("g", new Integer(2));\r
+    nucleotideHash.put("t", new Integer(3));\r
+    nucleotideHash.put("u", new Integer(4));\r
   }\r
 \r
   // These numbers should correspond to the indices in the Color hashes\r