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Add lowercase nucleotides to nucleotideHash
author
amwaterhouse
<Andrew Waterhouse>
Thu, 8 Sep 2005 15:45:21 +0000
(15:45 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Thu, 8 Sep 2005 15:45:21 +0000
(15:45 +0000)
src/jalview/schemes/ResidueProperties.java
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diff --git
a/src/jalview/schemes/ResidueProperties.java
b/src/jalview/schemes/ResidueProperties.java
index
8b1d92b
..
f92bfd1
100755
(executable)
--- a/
src/jalview/schemes/ResidueProperties.java
+++ b/
src/jalview/schemes/ResidueProperties.java
@@
-91,6
+91,11
@@
public class ResidueProperties
nucleotideHash.put("G", new Integer(2));
\r
nucleotideHash.put("T", new Integer(3));
\r
nucleotideHash.put("U", new Integer(4));
\r
+ nucleotideHash.put("a", new Integer(0));
\r
+ nucleotideHash.put("c", new Integer(1));
\r
+ nucleotideHash.put("g", new Integer(2));
\r
+ nucleotideHash.put("t", new Integer(3));
\r
+ nucleotideHash.put("u", new Integer(4));
\r
}
\r
\r
// These numbers should correspond to the indices in the Color hashes
\r