--- /dev/null
+# STOCKHOLM 1.0
+#=GF ID SAM
+#=GF AC RF00162
+#=GF DE SAM riboswitch (S box leader)
+#=GF AU Ontiveros-Palacios N; 0000-0001-8457-4455
+#=GF GA 44.4
+#=GF NC 44.3
+#=GF TC 44.4
+#=GF PI S_box
+#=GF SE Grundy F, Henkin T, PMID:10094622
+#=GF SS Published; PMID:10094622
+#=GF TP Cis-reg; riboswitch;
+#=GF BM cmbuild -F CM SEED
+#=GF CB cmcalibrate --mpi CM
+#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 742849.287494 CM SEQDB
+#=GF CL CL00012
+#=GF DR SO; 0000035; riboswitch;
+#=GF DR GO; 0010468; regulation of gene expression;
+#=GF RN [1]
+#=GF RM 10094622
+#=GF RT The S box regulon: a new global transcription termination control system
+#=GF RT for methionine and cysteine biosynthesis genes in gram-positive bacteria.
+#=GF RA Grundy FJ, Henkin TM
+#=GF RL Mol Microbiol 1998;30:737-749.
+#=GF RN [2]
+#=GF RM 12910260
+#=GF RT An mRNA structure that controls gene expression by binding
+#=GF RT S-adenosylmethionine.
+#=GF RA Winkler WC, Nahvi A, Sudarsan N, Barrick JE, Breaker RR
+#=GF RL Nat Struct Biol 2003;10:701-707.
+#=GF RN [3]
+#=GF RM 12702767
+#=GF RT The riboswitch-mediated control of sulfur metabolism in bacteria.
+#=GF RA Epshtein V, Mironov AS, Nudler E
+#=GF RL Proc Natl Acad Sci U S A 2003;100:5052-5056.
+#=GF RN [4]
+#=GF RM 15215334
+#=GF RT Comparative genomics of the methionine metabolism in Gram-positive
+#=GF RT bacteria: a variety of regulatory systems.
+#=GF RA Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS
+#=GF RL Nucleic Acids Res 2004;32:3340-3353.
+#=GF RN [5]
+#=GF RM 16810258
+#=GF RT Structure of the S-adenosylmethionine riboswitch regulatory mRNA element.
+#=GF RA Montange RK, Batey RT
+#=GF RL Nature. 2006;441:1172-1175.
+#=GF RN [6]
+#=GF RM 20006621
+#=GF RT Discrimination between closely related cellular metabolites by the SAM-I
+#=GF RT riboswitch.
+#=GF RA Montange RK, Mondragon E, van Tyne D, Garst AD, Ceres P, Batey RT
+#=GF RL J Mol Biol. 2010;396:761-772.
+#=GF RN [7]
+#=GF RM 20637415
+#=GF RT Free state conformational sampling of the SAM-I riboswitch aptamer domain.
+#=GF RA Stoddard CD, Montange RK, Hennelly SP, Rambo RP, Sanbonmatsu KY, Batey RT
+#=GF RL Structure. 2010;18:787-797.
+#=GF RN [8]
+#=GF RM 20951706
+#=GF RT SAM recognition and conformational switching mechanism in the Bacillus
+#=GF RT subtilis yitJ S box/SAM-I riboswitch.
+#=GF RA Lu C, Ding F, Chowdhury A, Pradhan V, Tomsic J, Holmes WM, Henkin TM, Ke A
+#=GF RL J Mol Biol. 2010;404:803-818.
+#=GF RN [9]
+#=GF RM 22355167
+#=GF RT YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not
+#=GF RT K-loops.
+#=GF RA Baird NJ, Zhang J, Hamma T, Ferre-D'Amare AR
+#=GF RL RNA. 2012;18:759-770.
+#=GF RN [10]
+#=GF RM 22539525
+#=GF RT Structure and folding of a rare, natural kink turn in RNA with an A*A pair
+#=GF RT at the 2b*2n position.
+#=GF RA Schroeder KT, Daldrop P, McPhee SA, Lilley DM
+#=GF RL RNA. 2012;18:1257-1266.
+#=GF RN [11]
+#=GF RM 23325110
+#=GF RT The plasticity of a structural motif in RNA: structural polymorphism of a
+#=GF RT kink turn as a function of its environment.
+#=GF RA Daldrop P, Lilley DM
+#=GF RL RNA. 2013;19:357-364.
+#=GF RN [12]
+#=GF RM 27016741
+#=GF RT A critical base pair in k-turns determines the conformational class
+#=GF RT adopted, and correlates with biological function.
+#=GF RA Huang L, Wang J, Lilley DM
+#=GF RL Nucleic Acids Res. 2016;44:5390-5398.
+#=GF RN [13]
+#=GF RM 33978763
+#=GF RT Structure and folding of four putative kink turns identified in structured
+#=GF RT RNA species in a test of structural prediction rules.
+#=GF RA Huang L, Liao X, Li M, Wang J, Peng X, Wilson TJ, Lilley DMJ
+#=GF RL Nucleic Acids Res 2021;49:5916-5924.
+#=GF CC The SAM riboswitch is found upstream of a number of genes which code for
+#=GF CC proteins involved in methionine or cysteine biosynthesis in Gram-positive
+#=GF CC bacteria. The SAM riboswitch acts at the level of transcription
+#=GF CC termination control. The predicted structure consists of a complex
+#=GF CC stem-loop region followed by a single stem loop terminator region. An
+#=GF CC alternative and mutually exclusive form involves bases in the 3' segment
+#=GF CC of helix 1 with those in the 5' region of helix 5 to form a structure
+#=GF CC termed the anti-terminator form [1]. This entry represents the conserved
+#=GF CC core of the complex structure involving helices 1-4. The structure of SAM
+#=GF CC riboswitch has been reported in PDBs: 2GIS, 2YDH, 2YGH, 3GX2, 3GX3, 3GX5,
+#=GF CC 3GX6, 3GX7, 3IQN, 3IQP, 3IQR, 3V7E_C, 3V7E_D, 4AOB, 4B5R, 4KQY, 5FJC,
+#=GF CC 5FK1, 5FK2, 5FK3, 5FK4, 5FK5, 5FK6, 5FKD, 5FKE, 5FKF, 5FKG, 5FKH, 7EAF
+#=GF CC [5-13]
+#=GF WK SAM_riboswitch_(S_box_leader)
+#=GF SQ 457
+
+AF027868.1/5245-5154 U-UUCUAUCCAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC-UCGGCAACA-------UU-----------------------------------------------------------AU------------UGUGCCA-AUUC--CAG-CAAGC-------GCUA-------
+AF269983.1/571-671 A-CCUUAUUUUGAG-AAG-C-UG-----------------AGGGA-UUUGG-CCCAU--AGAA-GCU-UCAGCAACC-G-ACU-UUA---------------------------------------------------------AAU----AGC-AC--GGUGCUA-AUAC--CAA-CGAG--------CAA--------
+AJ000974.1/281-386 A-ACUUAUCAAGAG-CGG-C-UG-----------------AGGGA--CUGG-ACCUA--UGAA-GCC--CGGCAACC-U-GCA-UAG---------------------------------------------------------UUU----GUA-A---GGUGCUA-CUUC--CAG-CAAAAUG-----AAUUC------
+AL596164.1/95936-95817 C-UCUUAUCGAGAG-CGG-C-AG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC--CGGCAACC-U-AAC-UUUAUUUAA-----------------------------------------------GCGUAAA----GUG-AA--GGUGCUA-AUUC--CAG-CAAAAUGG---UGUAUU------
+AL591974.1/109385-109266 C-UCUUAUCGAGAG-CGG-C-AG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC--CGGCAACC-U-AAC-UUUAUUUAA-----------------------------------------------GCAUAAA----GUG-AA--GGUGCUA-AUUC--CAG-CAAAAUGG---UGUAUU------
+U52812.1/691-829 C-UCUUAUCCCGAGCUGG-C-GG-----------------AGGGA--CAGG-CCCUA--UGAA-GCC--CAGCAACC-G-GUU-UCUCUGUUAUUUAUUAUG----------------------------UUCAAUUGAGUGAGACA----ACC-AA--GGUGCUA-ACCU-GUUG-CAAGGUU-----GUAUG------
+AL596169.1/221462-221354 C-UCUUAUCCAGAG-CGG-U-AG-----------------AGGGA--CUGA-CCCUU--UGAA-GCC--CAGCAACC-U-ACA-CAUAU-------------------------------------------------------AAG----UGA-AA--GGUGCUA-AUCU-GUUG-CAGGAGU----AAUAU-------
+AL591980.1/66651-66543 C-UCUUAUCCAGAG-CGG-U-AG-----------------AGGGA--CUGA-CCCUU--UGAA-GCC--CAGCAACC-U-ACA-CAUAU-------------------------------------------------------AAG----UGA-AA--GGUGCUA-AUCU-GUUG-CAGGAGU----AUUAU-------
+AL596172.1/176254-176136 A-UCUUAUCCAGAG-UGG-U-GG-----------------AGGGA--AAUG-CCCUG--UGAA-ACC--CAGCAACC-U-AAA-CAAUAAUUC----------------------------------------------AUUAUGUG----UUU-AA--GGUGCUA-AGUC--AUG-CAGAACAA---CGAUU-------
+AL591983.1/96176-96058 A-UCUUAUCCAGAG-UGG-U-GG-----------------AGGGA--AAUG-CCCUA--UGAA-GCC--CAGCAACC-U-AAA-CAAUAAUUC----------------------------------------------AUUAUGUG----UUU-AA--GGUGCUA-AGUC--AUG-CAGAACAA---CUAAU-------
+AL596170.1/192-86 C-UCUUAUUAUGAG-UGG-U-AG-----------------AGGGA--CUGG-CCCGU--UGAA-ACC--CAGCAACC-U-UUC-AAUUC------------------------------------------------------GUUG----AAA-A---GGUGCUA-AAUC--CUG-CGAAGUG-----UGAU-------
+AL591980.1/89597-89491 C-UCUUAUAAUGAG-UGG-U-AG-----------------AGGGA--CUGG-CCCGU--UGAA-ACC--CGGCAACC-U-UUC-AAUAC------------------------------------------------------GUUG----AAA-A---GGUGCUA-AAUC--CUG-CGAAGUG-----UGAU-------
+AL939119.1/177986-178133 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-UACGG-CCCGA--UGAA-GCC-CCGGCAACC-C-UCC-AGUCGGUUCUUGUCACACGGA----------------------CGUGGCGAGGCUCCCGGCUA----GGG-AA--GGUGCCA-AAUC--CGU-CUCACGGC---GAGAUGC-----
+AB090330.1/380-279 U-ACUUAUCAAGAG-CGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--CAGCAACC-U-AUA-UGAAA------------------------------------------------------AUAU----AUA-A---GGUGCUA-AAUC--CUG-CAGCA--------UA--------
+U36379.1/1-106 A-UCCU-----GAG-UGG-U-GG-----------------AGGGA-CAUGGACCCAA--UGAA-ACC--CAGCAACC-U-CUU-UUUUA------------------------------------------------------UAAA----AGA-AA--GGUGCCA-AACCGUUUG-CAGACA------AAUA-------
+L42943.1/254-144 C-UCUUAUCCUGAG-UGG-U-GG-----------------AGGGA-CAUGGACCCAA--UGAA-ACC--CAGCAACC-U-CUU-UUUUA------------------------------------------------------UAAA----AGA-AA--GGUGCCA-AACCGUUUG-CAGACA------AAUA-------
+AF270301.1/145-36 C-UCUUAUCCUGAG-UGG-U-GG-----------------AGGGA-CAUGGACCCAA--UGAA-ACC--CAGCAACC-U-CUU-UAUU--------------------------------------------------------UAA----AGA-AA--GGUGCCA-AACCGUUUG-CAGACAA-----AUAU-------
+AJ002571.1/38016-37861 C-UCUUAUCGAGAGUUGG-G-CG-----------------AGGGA--UUGG-CCUUU--UGAC-CCCAACAGCAACC-G-ACC-GUAAUACCAUUGUGAAAUGGGGCGCACUGC-----UUUUCGCGCCGAGACUGAUGUCUCAUAA----GGC-AC--GGUGCUA-AUUC--CAU-CAGAU--------UGU-------
+AL596163.1/172398-172500 U-UCUUAUCCAGAG-UGG-U-GG-----------------AGGGA-AUCGG-CCCAG--UGAA-ACC--CGGCAGCG-G-AGC-GC----------------------------------------------------------AAG----UUC-----UAUGCUA-AUUC-CGAU-CAGAAG------UAAU-------
+AL591973.1/137133-137235 U-UCUUAUCAAGAG-UGG-U-GG-----------------AGGGA-AUCGG-CCCAG--UGAA-ACC--CAGCAGCG-G-AGC-GC----------------------------------------------------------AAG----UUC-----UAUGCUA-AUUC-CGAU-CAGAAG------UAAU-------
+AL596165.1/180914-180814 U-UCUUAUCACGAA-AGG-U-GG-----------------AGGGA--CUGG-CCCUU--UGAA-GCC-UUAGCAACC-G-GAA-UUU---------------------------------------------------------AUU----UUC-AC--GGUGCUA-AUUC--CAG-CAGUA--------UA--------
+AL596166.1/166748-166844 A-ACUUAUCAAGAA-AGG-U-GG-----------------AGGGU-UCUGG-CCCAG--UGAA-GCC-UUGGCAACC-G-GAC-UU-----------------------------------------------------------------UUC-AC--GGUGCCA-AAUC--CAG-CAGU---------AUC-------
+AL591976.1/242770-242867 A-ACUUAUCAAGAA-AGG-U-GG-----------------AGGGU-UCUGG-CCCCG--UGAA-GCC-UUGGCAACC-G-GAU-UU-----------------------------------------------------------------UUC-AC--GGUGCCA-AAUC--CAG-CAGG--------UAAC-------
+AE017333.1/969726-969839 U-UCUUAUUCAGAG-AGG-C-GG-----------------AGGGA-AUUGG-CCCUG--UGAA-ACC-UCGGCAGCG-G-GUU-CUGCAUA--------------------------------------------------CAGCAG----AAU-AC--UGUGCCA-CAUC--CAA-CAAGCCG-----UACG-------
+BX571856.1/15939-16037 U-UCUUAUUGUGAG-AAG-U-UG-----------------AGGGA-CUUGG-CCCUG--UGAU-ACU-UCAGCAACC-G-ACU-UU----------------------------------------------------------AUA----G-C-AC--GGUGCUA-AAAC--CAA-CGAGUU-----------------
+AE017225.1/3092372-3092274 U-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CAGCAACC-G-CGA--------------------------------------------------------------------UGC-A---GGUGCUA-AUUC--CAG-CAGAACA-----AAUU-------
+AP006716.1/475254-475360 C-UCUUAUCAAGAG-UGG-U-GG-----------------AGGGA--UGUG-CCCUA--AGAA-GCC--CAGCAACC-G-UCG-UUU---------------------------------------------------------AAC----GAA-AU--GGUGCUA-AUUC--ACA-UAAAGUAG---ACAAU-------
+AP006716.1/507636-507743 G-ACUUAUCCAGAG-AAG-U-GA-----------------AGGGA-UUUGG-CCCAA--UGAA-ACU-UCAGCAACA-G-ACU-UAAAAG----------------------------------------------------ACAAA----AGU-AC--UGUGCUA-ACUC-CAAA-GAGGU----------A-------
+BA000028.3/2365513-2365403 C-UCUUAUUCAGAGUUGG-U-GG-----------------AGGGA--CAGA-CCCGA--UGAA-GCC--CAGCAACC-A-UCA-CUACU-------------------------------------------------------GGU----GAA-AA--GGUGCUA-AUCU-GAUG-CAAGGAUA---AUAGU-------
+AE017225.1/177275-177161 C-UCUUAUCAAGAG-UGG-C-GG-----------------AGGGA--CUGG-CCCGA--UGAU-GCC--CGGCAACCGA-GCU-UAUGACG---------------------------------------------------UAUAA----GCU-AA--GGUGCUA-AUUC--CUG-CAAAAUG-----AGUUU------
+AP008934.1/131883-131770 C-UCUUAUUAAGAGUGAG-U-GG-----------------AGGGA-CUUGG-CCCUA--UGAA-ACU-CCAGCAACA-G-CAG-UC----------------------------------------------------------AUA----UGC-GA--UGUGCUA-AAUC--CAA-CAACUCA-----GUAUGAC----
+AE017225.1/1375419-1375524 U-UCUUAUAAAGAG-AGG-C-GG-----------------AGGGA--CUGG-CCCUA--CGAU-GCC-UCGGCAGCGGA-CUC-GAUUU-------------------------------------------------------UAG----AGU-GC--UGUGCCA-AAUC--CAG-CAAGCAU-----GUG--------
+CP000046.1/900604-900707 C-UCUUAUCGAGAG-UGG-U-GG-----------------AGGGA--UGUG-CCCUA--CGAA-GCC--CGGCAACC-G-UCU-UAU---------------------------------------------------------AUA----GAA-AU--GGUGCCA-AUUC--ACA-UAAAGUU-----UUAA-------
+BA000043.1/974636-974744 U-UCUUAUCAAGAGCAGG-C-GG-----------------AGGGA--CGAG-CCCAA--UGAA-GCC--CGGCAACC-G-GCU-UGGCGCG---------------------------------------------------CGCCA----AGC-AC--GGUGCUA-AUUC--UUG-CAGCG--------GAA-------
+CP000001.1/185418-185523 U-ACUUAUCCAGAG-AGG-U-AG-----------------AGGGA--CUGG-CCCUA--UGAC-ACC-UCAGCAGCG-G-GUU-CUGUAA-----------------------------------------------------UAGG----AAC-AC--CGUGCUA-AUUC--CAG-CAAG---------CAA-------
+CP000001.1/3927237-3927096 C-UCUUAUCAAGAGCAGG-U-GG-----------------AGGGA-UUUGG-CCCGA--UGAA-GCC--CAGCAACC-G-ACC-GUAAUACCAUUGUGAAAUGG------------------------GGCGUUUAUGACGCCAAAA----GGC-AC--GGUGCUA-AUUC--CAG-CAGAAAG-----UAAAA------
+CP000046.1/2381002-2380907 C-ACUUAUCUAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC-UCGGCAACA--------UCUC-------------------------------------------------------GAA------------UGUGCCA-AUUC--CAG-UAACC-------GUAA-------
+BA000028.3/3162073-3162182 C-UCUUAUCAAGAG-UGG-U-GG-----------------AGGGA-AUAGG-CCCUG--CGAA-GCC--CGGCAACC-U-GUA-GCAAUU----------------------------------------------------GCUAU----UGA-AA--GGUGCUA-AAUC--CUA-CAGACU------UCAU-------
+AE017355.1/3872413-3872520 U-UCUUAUCAAGAGCAGG-U-GG-----------------AGGGA--CGAG-CCCGA--CGAA-ACC--CGGCAACC-G-AUC-UACAUAA---------------------------------------------------UUGUA----GAC-AC--GGUGCUA-AUUC--UCG-CAGC---------AUU-------
+AP006840.1/2688754-2688649 G-GUUCAUCGAGAG-UGG-C-GG-----------------AGGGA--CUGG-CCCCA--UGAU-GCC-ACGGCAACC-U-CUC-CCGCG-------------------------------------------------------GGG----AGA-AC--GGUGCCA-AAUC--CAG-CGGAC-------ACUC-------
+AE017333.1/1735574-1735680 A-ACUUAUCAAGAG-CGG-U-GG-----------------AGGGA--CUGG-UCCGA--UGAA-ACC--CGGCAACC-U-GCG-UGUGA-------------------------------------------------------AGC----GUA-A---GGUGCUA-CUUC--CAG-CAAAAUG-----CCCU-------
+AE017355.1/4749676-4749569 C-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA-CUGUG-CCCUG--UGAA-GCC--CGGCAACC-G-UCA-ACUUA------------------------------------------------------UGUU----GAA-AU--GGUGCCA-AUUC--CUG-CAAAGC------AAAU-------
+CP000029.1/480767-480869 C-UCUUAUCGAGAG-AGG-U-GG-----------------AGGGA--UGUG-CCCUA--AGAA-GCC--CGGCAACC-G-UCU-AAA---------------------------------------------------------AUA----GAA-AU--GGUGCCA-AUUC--ACA-UAAAGUA-----UAAC-------
+BA000043.1/883132-883242 U-UCUUAUCAAGAG-AAG-C-GG-----------------AGGGA-ACUGG-CCCAA--UGAA-GCU-UCAGCAACC-A-GCC-GCCCG-------------------------------------------------------GCG----GCC-A---GGUGCUA-AAUC--CAG-CGAAUUGA--GCAUUC-------
+AP006627.1/604071-603968 U-UCUUAUUAAGAG-GAG-C-AG-----------------AGGGA--CUGG-CCCAA--UGAU-GCU-UCAGCAACC-C-CGC-CAU---------------------------------------------------------GAG----CGG-AA--GGUGCUA-AUUC--CAG-CAGGA-------CUAC-------
+AE017355.1/1833727-1833836 U-UCUUAUUAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUU--CGAA-GCC-UCAGCAACC-UGAUU-UAUGU-------------------------------------------------------GAU----AUA-AA--GGUGCUA-AAUC--CUG-UAGGAUA-----UAAA-------
+AP006627.1/3104693-3104588 U-UCUUAUCGAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCAA--UGAA-ACC--CGGCAACC-G-CAA-GUU---------------------------------------------------------CGC----UUG-AA--GGUGCUA-AAUC--CUG-CAAAGCA-----UAUG-------
+AE017334.2/197187-197081 A-UUGUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUU--UGAA-ACC-UCGGCAGCA-G-GUU-CAUUU-------------------------------------------------------UUG----AAU-AC--UGUGCCA-CUUC--CUG-CAAGCU------UUAU-------
+BA000043.1/972359-972191 C-UCUUAUCAAGAGUUGG-C-UG-----------------AGGGA-AUUGG-CCCAA--UGAA-GCC--CAGCAACC-G-ACC-GUAAUACUAUCGUGAGAUAGGGCGCACGCCAAGGGCGGCGCCGGAAGCGUCAUGCUUCCGCAG----GGC-AC--GGUGCUA-AGUC--CAA-CAGAAAGACCGAUGUC-------
+BA000043.1/2876470-2876356 C-UCUUAUCCCGAGCCGG-U-GG-----------------AGGGA--CAGG-CCCGA--UGAA-GCC--CAGCAACC-G-UCA-CAACUGUA------------------------------------------------CAUGUGU----GAA-AU--GGUGCUA-ACCU-GUGG-CAAGGCG-----CAGU-------
+BA000028.3/2134366-2134264 A-ACUUAUCCAGAG-UGA-C-GG-----------------AGGGA-ACAGG-ACCUA--CGAU-GUC-ACAGCAACC-U-ACC-UU----------------------------------------------------------UAC----GGA-GU--GGUGCUU-CUUC--CUG-CAGAA--------UUU-------
+BA000004.3/3590821-3590709 C-UCUUAUCAUGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC--CAGCAACC-G-CCA-AGCAGCAAA-----------------------------------------------UCGCUUG----GAA-AA--GGUGCUA-AUUC--CUG-CAAAG-------CGAU-------
+AE017333.1/1487506-1487363 C-UCUUAUCGAGAGUUGG-G-UG-----------------AAGGA--CUGG-CCUAA--UGAU-CCCAACAGCAACC-G-ACC-GUAAUACCAUUGUGAAAUGGGG--------------------CGCGAAUCUCUGCGCCGCUAG----GGC-AC--GGUGCUA-AUUC--CAU-CAGACUU-----UGAA-------
+AE017180.1/2700118-2700220 U-UCUUAUCAAGAG-UGG-U-GG-----------------AGGGA--AAGG-CCCUG--UGAA-ACC-ACAGCAACC-G-GUC-CGGUAG----------------------------------------------------CGGAC----GCC-A---GGUGCUA-AAUC--CUG-CCCGA------------------
+AE017334.2/4074410-4074519 U-UCUUAUCUAGAG-AGG-U-AG-----------------AGGGA--CUGG-CCCUA--UGAC-GCC-UCAGCAACC-A-UUA-ACAUU------------------------------------------------------UGUU----AAU-AA--GGUGCUA-AUUC--CAG-CAAAUUG----CGAAA-------
+AE017225.1/4554904-4554783 C-UCUUAUCCCGAGCUGG-C-GG-----------------AGGGA--CAGG-CCCGA--UGAA-GCC--CAGCAACC-U-CAC-UUGUAGUGGU--------------------------------------------AAAUACAGG----UGA-AU-AGGUGCUA-AAACCUGUG-CGAGGCU-----ACAG-------
+BA000043.1/3025512-3025403 C-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--UGUG-CCCAA--UGAA-GCC--CGGCAACC-G-UCA-GCGCAU----------------------------------------------------GUGCU----GAA-AU--GGUGCCA-AUUC--ACA-CAAAGCG-----GCCU-------
+BA000028.3/3200638-3200530 A-UCUUAUCCUGAG-AGG-U-GG-----------------AGGGA-AAUGG-CCCAA--AGAA-GCC-UCGGCAACA-G-GUU-CUAGC-------------------------------------------------------UUG----AAU-AC--UGUGCCA-AAUC--CAU-CAAGUAU-----UCUA-------
+AP006627.1/3008449-3008342 C-UUUUAUCCAGAGAUGG-C-GG-----------------AGGGA--CAGG-CCCGA--AGAA-GCC--CAGCAACC-A-ACA-CGUAA-------------------------------------------------------CGU----GUA-AA--GGUGCUA-A--C--CUG-CAGAAUG-----CUCGG------
+AE017333.1/4014357-4014466 U-CCUUAUCAAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCUG--UGAA-ACC--CGGCAACC-G-CUG-UCUAU-------------------------------------------------------GAC----AGA-AU--GGUGCUA-AAUC--CUU-AAGAGCA-----UGUUC------
+AE017225.1/320618-320724 U-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--CGAU-ACC-UCAGCAACG-G-GUU-UUUUU-------------------------------------------------------AAU----AC------CGUGCUA-ACUC--CAG-CAAGCCAU---AUAAA-------
+AE017333.1/3063716-3063609 A-GCUUAUAAAGAG-AGA-U-GG-----------------AGGGA--CUGG-CCCGG--UGAA-AUC-UCAGCAACC-U-GCA-GC----------------------------------------------------------AGU----GCA-A---GGUGCUA-AAUC--CAG-CAGAAUG-----UCAGGC-----
+AE017355.1/1384699-1384807 A-GCUUAUCAAGAG-AAG-C-GG-----------------AGGGA-ACUGG-CCCGG--CGAA-GCU--CGGCAACC-U-GCU-UAUAG-------------------------------------------------------AAA----GCA-A---GGUGCUA-AAUC--CAG-CAAAAUG-----GAAUC------
+AP006840.1/138157-138265 C-UCUUAUCAAGAG-AAG-C-GG-----------------AGGGA-CCUGG-CCCGA--UGAA-GCU-UCGGCAACCAG-CCU-GCGUC------------------------------------------------------ACCA----GGC-AA--GGUGCCA-AGUC--CAG-CCGGGCA-----UACU-------
+AE017333.1/1292148-1292264 U-UCUUAUCACGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUU--UGAA-ACC-UCAGCAACC-G-GUC-UGCACUGACGA-------------------------------------------CGUCAGUGC----ACC-AA--GGUGCUA-AAUC--CAG-CAAGCGG-----AUG--------
+AE017355.1/768972-768867 G-UCUUAUCAAGAGCAGG-U-GG-----------------AGGGA--UGAG-CCCUA--CGAA-GCC--CGGCAACC-G-ACC-CAUUU-------------------------------------------------------AUG----GGC-AC--GGUGCUA-AUUC--UUA-CAACA-------CAUU-------
+BA000045.2/2730826-2730714 G-ACUUAUCCAGAGCAGG-C-GU-----------------AGGGA-ACAGG-CCCGG--UGAC-GCC-ACGGCAACCGC-CCA-CUAGC-------------------------------------------------------AAC----GGG-AAAAGGUGCCA-AUUC--CUG-CGGUUCC-----UCAC-------
+CP000029.1/1935501-1935405 A-ACUUAUCAAGAG-AAG-U-GG-----------------AGGGA--CUGG-CCCAA--AGAA-GCU-UCGGCAACA-------UUGUA-------------------------------------------------------UCA------------UGUGCCA-AUUC--CAG-UAACCGA-----GAA--------
+AP006627.1/1705479-1705377 U-UCUUAUCCAGAG-AGA-U-GG-----------------AGGGA-UUUGG-CCCUU--UGAA-GUC-UCAGCAACC-G-GCC-UUU-----------------------------------------------------------G----GCA-AU--GGUGCUA-AUUC--CAA-UAGGUAA-----UGUA-------
+AE017334.2/2953356-2953255 U-UCUUAUCACGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC-UCGGCAGCG-G-AUU-CGUUA-------------------------------------------------------UGA----AUA-C---UGUGCCA-AUUC--CAG-CAAGG----------U-------
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+AE017355.1/388363-388251 U-CUUUAUCAAGAG-AGG-C-AG-----------------AGGGA--CCGG-CCCUU--UGAA-GCC--CAGCAACC-U-CAG-UUUAUA----------------------------------------------------CAAAC----UGA-AU-AGGUGCUA-AUUC--CUG-CAAAAUG-----CAUUG------
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+AE006470.1/606189-606295 C-UAUCAUCCAGAA-AGG-C-GG-----------------AGGGA--CUGG-CCCUG--CGAA-GCC-UUGGCAACC-U-UCA-UUCCA-------------------------------------------------------CAU----GAG-C---GGUGCCA-AAUC--CAU-CCCGGAG-----GAAA-------
+AP006716.1/417999-418100 G-UCUUAUUAAGAGUGAG-U-GG-----------------AGGGA-AUUGG-CCCUA--UGAA-GCU-CCAGCAACU-G-CGC-UUU-----------------------------------------------------------G----CGU-GA--GGUGCUA-AAUC--CAA-CAGG---------AGU-------
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+AP008934.1/1948647-1948540 C-UCUUAUCACGAG-AGG-U-GG-----------------AGGGA--UGUG-CCCUU--UGAA-GCC--CGGCAACC-G-UCU-GUA---------------------------------------------------------ACA----GAA-AU--GGUGCCA-AUUC--ACA-UAAAGUU-----CAUAG------
+CP000088.1/254824-254964 U-GCUCAUCCAGAG-GGG-U-GG-----------------AGGGA-CACGG-CCCUG--UGAA-GCC-CCGGCAACC-A-UCC-CGGUGGACGUUGCUCGUC-----------------------------AGGUGCGAGGCGGCCG----GGA-CA--GGUGCCA-ACUC--CGU-CCCACUG-----UCAAGGU----
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+AE017333.1/1489705-1489804 U-UCUUAUCAAGAGCAGG-C-AG-----------------AGGGA--CAAG-CCCGA--UGAA-GCC--CGGCAACC-G-ACU-UUU---------------------------------------------------------UAA----G-C-AC--GGUGCUA-AUUC--UUG-CAGCU----------G-------
+AE017180.1/1014096-1014202 A-ACUUAUCAAGAG-CGA-C-CG-----------------AGGGA--CAGG-CCCGG--UGAC-GUC-GCGGCAACC-U-CCC-CAU---------------------------------------------------------GGG----GGG-AA--GGUGCCA-AUUC--CUG-CGAGACC-----GACA-------
+AP006840.1/1830606-1830721 C-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGA-ACUGG-CCCGA--UGAA-ACC--CGGCAACC-C-AGG-ACGCUGCG-------------------------------------------------GGGCGU----CCG-AA--GGUGCCA-ACUC--CAC-CGGCGGC-----CUCAC------
+AP006716.1/14213-14314 A-ACUUAUUAAGAG-AAG-U-GG-----------------AGGGA-CACGG-CCCUG--AGAA-ACU-UCAGCAACC-G-GCG-AUGCA-------------------------------------------------------UAC----G-C-AC--GGUGCUA-CUAC--CAA-CGAGAU-----------------
+AE017333.1/1207733-1207622 U-UCUUAUCAAGAG-AGG-C-AG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC-UCAGCAACC-G-GUG-AAUGAAUA-------------------------------------------------UUCAUG----ACC-AA--GGUGCUA-AAUC--CAG-CAAGC-------AGCC-------
+BA000028.3/1098099-1097993 U-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCAA--GGAA-GCC-UCGGCAACA-G-ACU-UAUUUG----------------------------------------------------AUUAA----GUA-C---UGUGCCA-AUUC--CAG-UAGCGUA-----AUU--------
+BA000043.1/745485-745383 U-UCUUAUCAAGAG-AGG-G-GG-----------------AGGGA--CUGG-CCCGG--UGAA-CCC-UCAGCAACC-U-GGC-CCG---------------------------------------------------------CGG----CCA-A---GGUGCUA-AAUC--CAGACAGGCGG-----AAG--------
+AP006627.1/1983212-1983311 U-UCUUAUCAAGAG-AAG-U-GG-----------------AGGGA--AUGG-CCCAA--UGAA-GCU-UCAGCAACC-A-GCC-AAC---------------------------------------------------------CAU----GGU-CA--GGUGCUA-AAUC--CAG-CAG----------UUU-------
+CP000001.1/334370-334474 U-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--CGAU-ACC-UCAGCAACG-G-GUU-UUUU---------------------------------------------------------------AAU-AC--CGUGCUA-ACUC--CAG-CAAGCCU-----AUAA-------
+AP006627.1/951406-951512 G-ACUUAUCAAGAG-CGA-C-UG-----------------AGGGA-UUAGG-CCCAA--UGAC-GUC--CAGCAACC-U-CCC-GUU---------------------------------------------------------ACG----GGG-AA--GGUGCCA-AUUC--CUG-CAGAAUG-----GGAU-------
+AP006716.1/2100177-2100072 U-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--UGUG-CCCUA--UGAA-GCC--CGGCAACC-G-UCU-AGUU--------------------------------------------------------AUA----GAA-AU--GGUGCCA-AUUC--ACA-UAAAGUU-----GAUU-------
+AP008934.1/616628-616728 A-ACUUAUCAAGAG-AAG-U-GG-----------------AGGGA--CUGG-CCUGU--GGAU-ACU-UCGGCAACA-U-GAU-UAU----------------------------------------------------------------GCG-----UGUGCCA-AUUC--CAG-UAGCAUC-----AUUU-------
+BA000004.3/1348816-1348929 G-ACUUAUCGAGAG-AGG-C-AG-----------------AGGGA--CUGA-CCCGA--UGAU-GCC--CGGCAACC-C-GUU-UGUUAGCC-------------------------------------------------AAGCAA----ACG-AA--GGUGCUA-AUUU--CAG-CAGAAUG-----AUUU-------
+CP000141.1/2169978-2169874 C-UCUUAUCAAGAG-UGG-C-GG-----------------AGGGA--CUGG-CCCAA--UGAA-GCC--CGGCAACC-G-GCC-AUAUU------------------------------------------------------UUUG----GCA-AU--GGUGCCA-AUUC--CUG-CGGAU--------UAA-------
+AM412317.1/1193313-1193415 U-UCUUAUCAAGAG-CGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC--CGGCAACCAG-UAU-AUAUU-------------------------------------------------------UUA----UAC-AU--GGUGCUA-AAUC--CUG-CAG---------AUUU-------
+AM180355.1/1724139-1724245 G-UCUUAUCAAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCUU--UGAA-ACC--CGGCAACC-A-GUA-UAUUUU-----------------------------------------------------AUAU----ACA-UU--GGUGCUA-AAUC--CUG-CAACUAA-----UAUA-------
+AAWL01000001.1/327573-327687 C-UUUCAUCAAGAGCUGG-C-UG-----------------AGGGA--CUGG-CCCGA--UGAC-GCC-GCGGCAACC-A-UCG-CAUCUUU--------------------------------------------------GGGUGC----GAA-AC--GGUGCCA-AUUC--CUG-CAGAACG-----GAUA-------
+AAJM01000461.1/236-129 U-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCUUA--UGAA-ACC-UCAGCAACAGG-UCU-GCUUA------------------------------------------------------AGUA----GAC-AC--UGUGCUA-AUUC--CAG-CGGGUGA-----UAAU-------
+CP000728.1/2062169-2062064 C-UCUUAUCAAGAG-UGG-C-GG-----------------AGGGA-UCAGG-CCCUG--UGAA-GCC--CGGCAACA-G-CUA-GUUGA------------------------------------------------------ACCU----AGA-AA--UGUGCUA-AUUC--CUG-CAGUG--------GAU-------
+CP000568.1/2679822-2679717 A-CCUUAUCAAGAG-AGG-C-GG-----------------AGGGA-AUGGG-CCCUA--UGAA-ACC--CGGCAACC-G-GCA-GA----------------------------------------------------------AUU----GUA-UC--GGUGCCA-AUUC--CUA-CAGGAUG-----UAAA-------
+AP008230.1/4549598-4549497 U-UCUCAUCCAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACC-G-GCC-UAU---------------------------------------------------------AUG----GCA-GU--GGUGCUA-AUUC--CAG-CAGGAUU-----AUU--------
+CP000726.1/3620086-3619976 U-UCUUAUCCAGAG-CGG-C-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--CGGCAACCAC-UAA-GGUGUUUU------------------------------------------------AUUACUU----UAA-AC--GGUGCUA-AUUC--CAG-CAGG---------UUA-------
+AAOX01000018.1/27020-26864 C-UCUUAUCAAGAGCAGG-C-AG-----------------AGGGA-CUUGG-CCCGA--UGAU-GCC--CAGCAACC-G-ACC-GUAAUUCCAUCGUGAGAUGGGGCGCAAU---------CCUUGCGCCGGAGAAUUCCUCCAUAA----GGC-AC--GGUGCUA-AUUC--CAG-CAGAAAG-----CUUGG------
+AAXV01000005.1/126573-126679 U-UCUUAUCAAGAG-AGA-C-GG-----------------AGGGA--UCGG-CCCGA--UGAA-GUC-UCAGCAACC-A-GCU-CA----------------------------------------------------------AUC----AGU-AU--GGUGCUA-AUUC--CUU-UUGGCAA-----AAUCU------
+AAOX01000014.1/12064-12163 U-UCUUAUCCAGAG-AGG-U-AG-----------------AGGGA--CUGG-CCCUA--UGAC-ACC-UCGGCAGCG----GA-CUGAU-------------------------------------------------------GAA----C-------CGUGCCA-AUUC--CAG-CAGGC-------AGAU-------
+CP000612.1/2418052-2417945 U-ACUUAUCAAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--CGGCAACC-G-GCC-AUUGG-------------------------------------------------------AUG----GCG-GC--GGUGCCA-ACUC--CUG-CAGGACU-----UUUA-------
+CP000673.1/1716322-1716209 U-UCUUAUCAAGAG-AGA-C-GG-----------------AGGGA--CUGG-CCCUA--UGAU-GUC--CGGCAACCAG-AAG-AUUUU-------------------------------------------------------UAU----UUC-AU--GGUGCUA-AUUC--CAG-CAGGUAU-----UAAUAUG----
+CP000673.1/2974771-2974666 G-CUUUAUCAAGAG-CGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--CAGCAACC-A-GUA-UUGUUUU---------------------------------------------------UUAAU----ACA-UU--GGUGCUA-AUUC--CUA-CAGCU----------U-------
+AM180355.1/174147-174250 A-CCUUAUCAAGAG-AGG-C-UG-----------------AGGGA--UAGG-CCCUG--UGAA-GCC--CAGCAACC-A-CCC-AAA---------------------------------------------------------UGG----GAA-AA--GGUGCUA-AUUC--CUA-CAAGACA-----AAAG-------
+CP000724.1/4004549-4004448 A-ACUUAUCAAGAG-AAA-C-UG-----------------AGGGA--CUGG-CCCGA--UGAU-GUU-UCAGCAACCAC-ACA-UAU----------------------------------------------------------------GUG-AC--GGUGCUA-AAUC--CAG-CAGAACA-----UAGU-------
+AAXV01000010.1/2942-2843 U-UCUUAUCAAGAG-AAG-C-AG-----------------AGGGA--CUGG-CCCAA--UGAA-GCU-UCAGCAACC-A-ACU-UUUU---------------------------------------------------------------GUC-A---GGUGCUA-AAUC--CAG-AAGACCG-----UUGA-------
+CP000724.1/763663-763763 G-CCUUAUCAAGAG-UGA-U-GG-----------------AGGGG-AAGGG-CCCGA--UGAA-AUC--CGGCAACC-A-UAG-AG-----------------------------------------------------------------UGU-AU--GGUGCUA-AGUC--CCU-CAGAAU------UUUG-------
+AAXV01000011.1/30443-30546 U-UCUUAUCAAGAG-AGA-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-AUC-UCGGCAGCG-G-AAC-UAUUA-------------------------------------------------------AGU----UAC-----UGUGCCA-AAUC--CAG-CAAGCAA-----UGUU-------
+AAOX01000002.1/320062-320165 U-UCUUAUCAAGAG-AGA-C-GG-----------------AGGGG-UAUGG-CCCGA--AGAA-GUC-UCGGCAGCA-G-GUU-CAU---------------------------------------------------------CCG----GAC-AC--UGUGCCA-AAUC--CAU-CAGGC--------AAA-------
+ABCB02000018.1/9340-9436 C-CCUUAUCAAGAG-AGG-C-GG-----------------AGGGA-ACAGA-CCCUG--UGAU-GCC--CGGCAACC-U-GCG-GUUU---------------------------------------------------------------GCA-A---GGUGCCA-AUUU--CUG-CGG----------GAA-------
+CP000685.1/4776282-4776182 U-ACUUAUCCAGAA-AGA-C-UG-----------------AGGGA-AUAGG-CCCAA--UGAA-GUC-UUAGCAACC-U-GUU-GC----------------------------------------------------------CGA----AUA-A---GGUGCUA-AAUC--CUU-CCGC---------UAU-------
+CP000557.1/1285675-1285779 G-UCUUAUCAAGAG-UGG-G-CG-----------------AGAGA-ACGGG-CUUGA--UGAC-CCC-ACAGCAACC-U-GCC-GCU-----------------------------------------------------------G----GCA-A---GGUGCUA-AAAC--CCG-CAAAGCG-----AGUU-------
+AE015927.1/303338-303443 C-UCUUAUCGAGAG-AGG-U-GG-----------------AGGGA-AAGGG-CCCUA--UGAA-ACC--CGGCAACC-A-AUA-UUUUUA----------------------------------------------------GAAGU----AUU-AA--GGUGCCA-AUUC--CUG-CAGAA----------A-------
+AE001437.1/453563-453665 U-UCUUAUCAAGAG-UGA-C-GG-----------------AGGGA--UAGG-CCCUA--UGAA-GUC--CGGCAACA-U-CCA-AUUAU-------------------------------------------------------UUU----GGA-GA--UGUGCUA-AUUC--CUA-CAGG---------UUU-------
+CP000673.1/503077-503184 U-UCUUAUCAAGAG-CGG-C-GG-----------------AGGGA--UAGG-CCCUA--UGAA-GUC--CGACAACC-G-ACA-UUUUG-------------------------------------------------------UGC----AUC-----GGUGUCA-AUUC--CUA-CAGAGUG-----UGUUA------
+AAOX01000055.1/439-545 U-UCUUAUCGAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCUG--UGAU-ACC--CGGCAGCC-G-CUG-ACUUA-------------------------------------------------------GUC----AGA-AU--GGUGCUA-AAUC--CAG-CAAAGCG-----CAAU-------
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+AAWL01000002.1/146610-146509 U-ACUCAUCAAGAGUUGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC-GCGGCAACCAU-UUG-GCAAG-------------------------------------------------------UCC----AAA-AC--GGUGCCA-AUUC--CGG-CG-----------UAC-------
+AP008230.1/4551167-4551265 C-UCUUAUCAAGAG-AGG-C-GG-----------------AGGGA--CUGG-CCCCA--UGAA-GCC--CGGCAACC-U-ACA-UAU----------------------------------------------------------------GUG-A---GGUGCUA-AAUC--CAGAGAACC--------AUC-------
+CP000673.1/1915422-1915314 U-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAU-GCC--CGGCAACC-U-GAA-UGUAUU----------------------------------------------------UACAU----UCA-AU--GGUGCUA-AUUC--CAG-CAGGUAA-----UAUA-------
+AP009389.1/1533734-1533850 C-UCUUAUCCGGAG-UGG-C-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--CGGCAACC-U-UUG-GGUAUAUAG----------------------------------------------GCGUACCC----AAA-AA--GGUGCUA-AUUC--CUG-CAGGAGA-----UUUA-------
+CP000673.1/3104226-3104112 U-UCUUAUCAAGAG-AGG-C-GG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC--CAACAACC-G-GCA-UUUAUUU--------------------------------------------------CAAUAU----GUA-UC--GGUGUUA-AUUC--CUG-CAGAGUU-----AAUUU------
+AAOX01000006.1/30687-30791 C-UCUUAUCCAGAG-AGG-C-GG-----------------AGGGA-AUUGG-CCCUA--UGAA-GCC-UCGGCAGCA-G-ACU-CCUUG-------------------------------------------------------CGA----G-A-AC--UGUGCCA-AAUC--CAA-CAAGCGG-----AAG--------
+AE015927.1/1456770-1456662 A-GCUUAUUAAGAG-CGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--CGGCAACC-U-GUA-UAUGUGUUU-----------------------------------------------GCAUAUU----AUA-A---GGUGCUA-AAUC--CUG-CGGUG----------U-------
+AE017194.1/1084280-1084386 U-UCUUAUGUUGAG-AAG-U-GG-----------------AGGGA--CGGG-CCCUA--UGAA-ACU-UCGGCAACC-U-CGU-AUG---------------------------------------------------------AGA----CGA-AA--GGUGCCA-AAUC--CUG-CAGGUGA-----AGAA-------
+AE017194.1/3299167-3299061 U-UCUUAUUAAGAG-AGA-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-AUC-UCAGCAACA-G-GCU-AUA---------------------------------------------------------AAA----GUA-C---UGUGCUA-AGUC--CAG-CAAACGU-----AUGAA------
+AE015927.1/1226200-1226097 A-UCUUAUCAAGAG-CGG-U-UG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC--CAGCAACC-U-AUA-CACAA-------------------------------------------------------AGU----AUA-AA--GGUGCUA-ACUC--CAG-CAGGA--------AAU-------
+AAXV01000007.1/42365-42470 C-UCUUAUCAAGAG-UAG-C-UG-----------------AGGGA--CUGG-CCCUA--UGAA-GCU--CGGCAACC-U-CCU-UUUAU-------------------------------------------------------AAA----GGA-A---GGUGCUA-AAUC--CUG-CAAACGA-----AAUU-------
+AAOX01000002.1/340881-340984 C-ACUUAUCUAGAG-UGG-C-UG-----------------AGGGA--CUGG-CCCAU--CGAA-GCC--CGGCAACC-U-GCU-AAAA---------------------------------------------------------------GCA-A---GGUGCCA-AUUC--CAG-CAAAAUG-----UCCAG------
+AAXG02000006.1/101826-101729 G-CCUUAUCAAGAG-CGG-U-GG-----------------AGGGA--ACGG-CCCGA--UGAA-ACC--CGGCAACC-U-GCG-CAU---------------------------------------------------------UGC----GCA-A---GGUGCCA-AAUC--CGG-CGA----------GAG-------
+CP000673.1/818867-818971 A-ACUUAUUAAGAG-AGG-C-GG-----------------AGGGA--AAGG-CCCUA--UGAA-GUC--CGGCAACC-A-GCA-UUAUG------------------------------------------------------UAAU----GUA-UU--GGUGCUA-AAUC--CUG-CAGCAUU-----GUA--------
+AE001437.1/1976371-1976471 U-UCUUAUCAAGA--AGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--UGACAACC-G-GCA-AAU----------------------------------------------------------------GUA-C---GGUGUUA-AUUC--CUG-CAAAACU-----UAUU-------
+AE001437.1/2914841-2914733 G-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC--CAACAACCAG-CAU-UUUUUAA---------------------------------------------------UUAGA----UGU-AU--GGUGUUA-AUUC--CUG-CAAAGUU-----AAU--------
+CP000232.1/2070462-2070570 C-UCUUAUCGAGAGCUGG-C-GG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC--CGGCAACC-G-GCC-UCUUAGA---------------------------------------------------ACCCA----GGU-AC--GGUGCCA-AUUC--CUG-CAGGA--------UUU-------
+AAEW02000009.1/42224-42117 G-UGUUAUCACGAG-UGG-U-GG-----------------AGGGA--AUGG-CCCUU--UGAA-ACC-ACAGCAACCGG-UCC-UGACGUU--------------------------------------------------CAGGAU----GAC-A---GGUGCUA-AUUC--CAC-CCCCG----------C-------
+AAWL01000026.1/22109-22215 C-UCUUAUCAAGAG-CGG-U-GG-----------------AGGGA--CUGG-CCCUG--UGAA-GCC-GCGGCAACC-G-GCA-GCAA--------------------------------------------------------UGC----GUC-U---GGUGCCA-AAUC--CAG-CAGAAUC-----UUCG-------
+CP000724.1/968949-968838 C-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACCAC-GAA-UUGUUUU--------------------------------------------------UGCAAU----UCG-AA--GGUGCUA-AUUC--CAA-CAACAC------UUAU-------
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+AAXV01000019.1/61222-61331 A-UCUUAUCAAGAG-AAG-C-AG-----------------AGGGA-UUUGG-CCCGA--UGAC-GCU-UCAGCAACC-U-CUA-ACAAA------------------------------------------------------UGUU----AGA-AA--GGUGCUA-AUUC--CAG-CAAAGGU-----UUUU-------
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+ABDT01000031.2/132-23 U-UUUUAUCAAGAA-AGA-C-AG-----------------AGGGA--CUGG-CCCUA--UGAA-GUC--UAGCAACC-U-GAA-UUAUUA----------------------------------------------------AUUAA----UUU-AA--GGUGCUA-AUUC--CAG-CAGAUAU-----UUUA-------
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+CP000922.1/2445298-2445193 C-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--UGUG-CCCGA--UGAA-ACC--CGGCAACC-G-UCA-GCGCU-------------------------------------------------------GCU----GAA-AU--GGUGCCA-AUUC--ACA-CAAAGCG-----UU-U-------
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+CP000383.1/165474-165365 G-AUUUAUAAAGAA-GAG-G-GG-----------------AGAGA-ACGGG-CUCUU--UGAA-CCU-CUAGCAACC-U-CCG-GGAGCA----------------------------------------------------AAUCC----AGA-AA--GGUGCUA-AUUC--CUGACCUGA--------AUA-------
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+ACET01000016.1/116829-116743 A-UACCAUCAAGAG-AGA-U-UG-----------------AGGGA--CAGG-CCCGA--AGAU-AUC-UCAGCAACC-U-ACU-GA----------------------------------------------------------AAU----GUG-U---GGUGCUA-ACUC--CUG------------------------
+ACII01000156.1/15700-15599 C-UUUUAUUCAGAG-UGG-U-GG-----------------AGAUACAAAGG-AUCUG--CGAA-GCC-ACGGCAACC-C-CUG-UUUG--------------------------------------------------------UGU----AGG-AA--GGUGCCA-ACCU--GAG-CGAGU------------------
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+AAVP02000024.1/12932-13029 C-UCUUAUUCAGAG-CAG-U-GG-----------------AGAUACAAAGG-AUCUG--AGAA-GCU-GCGGCAACC-C-CUG-AAC----------------------------------------------------------------AGG-AA--GGUGCCA-ACCU--GAG-CGAGU------------------
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+AAPD01000001.1/936074-936181 A-AAUUAUCAAGAA-AGG-A-CG-----------------AGGGA-ACAGA-CCCAU--CGAC-UCC-UUAGCAACC-C-UUA-ACGCU------------------------------------------------------CGUU----AAG-AA--GGUGCUA-CAUU--CUG-CCCAU--------UUA-------
+ABVK02000003.1/176687-176823 C-UCUUAUCCAGAG-CGG-U-GG-----------------AGGGU--ACGG-CCCUG--UGAA-ACC-GCGGCAACC-U-CCC-GCUCCUUCCGUUCCAU--------------------------------GGCCGGAAGCGGGCG----GGG-CU--GGUGCCA-ACGC--CGG-CCCGGGCGGGGG----AA-----
+CP000249.1/5255171-5255287 G-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA--ACGG-CCCAG--CGAA-GCC-CCGGCAACC-A-CCC-GCAUCCC--------------------------------------------------GUGCGC----GGC-A---GGUGCUA-AUUC--CGG-CCUGGUG-----GCAGAC-----
+AAYG02000021.1/57727-57823 C-UCUUAUUCAGAG-CAG-U-GG-----------------AGGUACAAAGG-ACCUG--UGAA-GCU-GCGGCAACC-C-CGU-CA-----------------------------------------------------------------AGG-AA--GGUGCCG-ACCU--GAG-CGAGC------------------
+ABJF01000395.1/4781-4624 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-CACGG-CCCGU--UGAA-GCC-CCGGCAACC-C-UCC-AGUCGGUUCUCGCGAUCGCCCGCACG------------GCGACACCAGCGAGGUCCCCGGCUA----GGG-AA--GGUGCCA-AUUC--CGU-CUCAUGG-----CGAAGUG----
+CP000820.1/215210-215091 G-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA--ACGG-CCCAG--CGAA-GCC-CCGGCAACC-A-CCG-UCGCAUCC-------------------------------------------------AUGCGC----GGC-A---GGUGCUA-AUUC--CGA-CCCGGGA-----CGCAGCC----
+ABLU01106369.1/97-6 C-AGUUAUUAAGAA-AGG-C-AG-----------------AGGGA-UUAGA-CCCGU--UGAA-GCC-UUAGCAACC-C-UUU-AUUC--------------------------------------------------------AUA----AAG-AA--GGUGCUA-CAUU--CU-------------------------
+ACEU01000265.1/7365-7210 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-UACGG-CCCGU--UGAA-GCC-CCGGCAACC-C-UCC-AGCCAGUCUCCGCGCGGUUCACCGA--------------UACCGCCACCGAAGGCCCUGGCUC----GGG-AA--GGUGCCA-AUUC--CGU-CUCGCGG-----CGAGAUG----
+CP000112.1/2490976-2491083 A-ACUCAUGAAGAG-GAC-G-AG-----------------AGGGG-UCUGG-CCCGA--UGAC-CGU-CCGGCAACC-U-GCC-CGC---------------------------------------------------------AAG----GCA-A---GGUGCCA-AAGC--CAG-CCACGGU-----GAGAU------
+ABYC01000290.1/27042-27199 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-CACGG-CCCGU--UGAA-GCC-CCGGCAACC-C-UCC-GGUCGGUACUCCCGGCGCGUGUUCCA------------CCCGCGUCCGCGAGGCUCCCGGCUC----GGG-AA--GGUGCCA-AUUC--CGU-CUCGCGG-----CGAGAUG----
+ACES01000173.1/1604-1473 A-CCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-UACGG-CCCGA--CGAA-GCC-CCGGCAACC-A-CCC-GCACGUUCGAUG----------------------------------------ACGAGCGGCGC----GGA-CA--GGUGCCA-AUUC--CGU-CCCCGCC-----GCAGGGUG---
+AP008226.1/728125-727989 C-UCUUAUCCAGAG-CGG-U-GG-----------------AGGGU--ACGG-CCCUG--UGAA-GCC-GCGGCAACC-U-CCC-GCCCCUUCCGUUCCAU--------------------------------GGCCGGAUGCGGGCG----GGG-CU--GGUGCCA-ACGC--CGG-CCCGGGCGGGGG----AA-----
+AP008957.1/5227167-5227072 C-CACCAUCCAGAG-UGG-C-UG-----------------AGAGA-CCUGG-CUCGA--UGAU-GCC-GCAGCAACC-C-GCU-UCGUUU----------------------------------------------------GCGCA----GUG-UG--GGUGCUA-CCGC--CAG------------------------
+ABXP01000190.1/1560-1672 G-UUUUGUACAGUUUGGG-U-AAC---------------CAGGGA-AAGAG-CCCGA--UGAA-ACC--CGGCAACCUG-UCC--UUUU-------------------------------------------------------AAG----GAU-AA--GGUGCCA-AUUC--UCU-CAGAAGA-----UUUUU------
+ABYA01000312.1/4381-4534 A-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-CACGG-CCCGA--UGAA-GCC-CCGGCAACC-C-UCC-AGCCGGUUCUCGUGUCGAUCGUUGUGCGCGCACAGCCGAUCGCACCCGCGAGGCUCCCGGCUA----GGG-AA--GGUGCCA-AAUC--CGU-C------------UCA-------
+CP001638.1/2955292-2955189 U-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCAA--UGAA-GCC--CGGCAACC-G-GUU-GUU----------------------------------------------------------UC----AAC-AU--GAUGCUA-AUUC--CAG-CAGAGCG-----AAUU-------
+CP002040.1/5022556-5022415 U-GCUCAUCCAGAG-GGG-U-GG-----------------AGGGA--CCGG-CCCUG--CGAA-GCC-CCGGCAACCAU-UCC-AGCAUGUGACACCCGCGA-----------------------------ACCCGCGGGACGGCUG----GGA-CA--GGUGCCA-ACUC--CGG-CCUGGGG-----ACAAGGU----
+CP001700.1/9422701-9422569 C-GCUCAUCCAGAG-GAG-C-UG-----------------AGGGA--CCGG-CCCUA--CGAC-GCU-CCGGCAACC-A-UCC-GUUCUGCCACCU----------------------------------------CAUCGUGGCAC----GGC-GC--GGUGCCA-ACUC--CGG-CCCACCC-----GGCAGCCGC--
+ADJS01002320.1/1580-1477 U-ACUCAUCGAGAG-CAG-C-GG-----------------AGGGA-UUUGG-CCCCA--UGAU-GCU-GCAGCAACC-A-UUC-UAUAU-------------------------------------------------------AGG----GAA-AA--GGUGCUA-AUUC--CAU-CAGCA----------U-------
+CP001825.1/900813-900915 G-CCUUAUCAAGAG-AGG-U-GG-----------------AGGGA-GACGG-CCCUG--UGAA-GCC--CGGCAACC-A-GCG-CCCAG------------------------------------------------------GAGC----GCC-A---GGUGCCA-AUUC--CGG-CGAGG----------U-------
+ACIE02000025.1/96603-96517 A-AUCCAUAGAGAG-AGA-U-GG-----------------AGGGA--CAGG-CCCUU--UGAU-AUC-UCAGCAACC-U-GCU-UUU----------------------------------------------------------AA----GUG-U---GGUGCUA-AUUC--CUG------------------------
+CP003056.1/960835-960734 G-CCUUAUCAAGAG-AGG-C-GG-----------------AGGGA-CUUGG-CCCGA--UGAA-ACC-UCAGCAACCAG-CCC-AUAC---------------------------------------------------------------GGC-AC--GGUGCUA-AAUC--CAA-CAGGU----------A-------
+CP002637.1/1789046-1788942 C-ACUCAUCAAGAG-CAG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-ACU-GCGGCAACC-G-UUG-GCGUA------------------------------------------------------GGCC----AAA-AA--GGUGCCA-AUUC--CUA-UAGGU---------AU-------
+ABJG02000470.1/2764-2919 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-AACGG-CCCGU--UGAA-GCC-CCGGCAACC-C-UCC-AGCCAGUCUCCGCGCGGUUCACCGA--------------UACCGCCACCGAAGGCCCUGGCUC----GGG-AA--GGUGCCA-AUUC--CGU-CUCGCGG-----UGAGAUG----
+CP003029.1/2215558-2215432 A-GCUCAUCCAGAA-GGG-U-GG-----------------AGGGA-CCAGG-CCCUG--UGAA-GCC-CUGGCAACC-G-CCC-CGUUGAUCGUCGG--------------------------------------GAGACGACGUGG----GGA-AA--GGUGCCA-AUUC--CUG-CCUCGCA-----CGAC-------
+CP001814.1/9846218-9846077 U-GCUCAUCCAGAG-GGG-U-GG-----------------AGGGA--CCGG-CCCUG--CGAA-GCC-CCGGCAACCCU-CCC-GGUUCAAGACUCGUUUUU-----------------------------CUGACGAGGUCGGCCG----GGA-CA--GGUGCCA-AUUC--CGG-UCUGUGA-----CCAGGGU----
+CP002157.1/228642-228537 C-CGUUAUCAAGAA-AGG-C-GG-----------------AGGGA-CUAGA-CCCAA--UGAA-ACC-UUGGCAACC-C-UUU-ACU---------------------------------------------------------UUA----AAG-UA--GGUGCUACAUUC--UAU-UACGCC-------UAU-------
+ACCR02000003.1/83189-83082 C-UCUUAUCUAGAG-CGG-C-AG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--CGGCAACC-U-AAC-UUUUU-------------------------------------------------------UUA----GUG-AA--GGUGCUA-AUUC--CAG-CAACAUU-----UCUA-------
+ACDB02000007.1/188296-188209 U-AACCAUCAAGAG-AAA-C-UG-----------------AGGGA--CUGG-CCCUA--GGAC-GUU-UCAGCAACC-U-GCU-UAA---------------------------------------------------------AAA----GUG-U---GGUGCUA-AUUC--CAG------------------------
+CP001681.1/4562963-4563072 U-GCUUAUAGAGAA-AGA-U-GG-----------------AGGGA-UUAGA-CCCUG--CGAA-GUC-UUGGCAACC-U-GUG-CUU----------------------------------------------------------------ACA-A---GGUGCUA-CAUU--CUA-CAGGAAA-----UGCAGCU----
+CP001699.1/4958750-4958860 U-UCUUAUCAAGAA-AGG-C-AG-----------------AGGGA-AAUGG-CCCUG--UGAA-GCC-UUAGCAACCAU-CCG-GAACCAC--------------------------------------------------CAAACC----GGA-AA--GGUGCUA-CAUC--CAG-CCCGC---------AU-------
+CP001968.1/2913390-2913281 A-ACUUAUCGAGAG-UAG-U-GG-----------------AGGGA-CAAGG-CCCUG--UGAA-GCU-ACAGCAGCC-G-GUU-AGCAUUAAA-----------------------------------------------AGCUGAU----GUC-U---GGUGCUA-AUUC--CGA-CC----C-----UAUG-------
+ABTR02000001.1/1201751-1201854 C-UCUUAUCGAGAG-AGG-C-GG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC--CGGCAACC-U-GCC-CGUA--------------------------------------------------------AGG----GCAUGA--GGUGCCA-ACAC--CAG-CGACC--------GAC-------
+ABJJ02000300.1/30118-29960 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-UACGG-CCCGA--UGAA-GCC-CCGGCAACC-C-UCC-AGUCGGUUCUCGUAGCGAUCGCUGACG-----------AUCGUCUCCGCGAGGCUCCCGACUC----GGG-AA--GGUGCCA-AAUC--CGU-CUCACGG-----CGAGAUG----
+ABWK02000020.1/271385-271488 C-UCACAUCCAGAG-CGG-C-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC-GCGGCAACC-A-UUG-ACUUC-------------------------------------------------------GUC----AAA-AC--GGUGCCA-AUUC--CUU-UAGGU---------CC-------
+CP001649.1/963759-963659 U-ACUCAUGUAGAG-GAU-G-CG-----------------AGGGAAAUCGG-CCCGU--CGAC-CAU-CCGGCAACC-U-GCU-UCA---------------------------------------------------------GCA----GCA-A---GGUGCCA-AUGC--CUU-CCCGU------------------
+CP001720.1/3787367-3787476 C-UCUUAUCCGGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACC-U-UCU-GAGAACU---------------------------------------------------AAUCA----GAA-A---GGUGCUA-AUUC--CUG-CAGAGGA-----UUUU-------
+CP001685.1/832315-832217 A-ACUUAUCAAGAG-UGA-UACU-----------------AGGGA--CCGG-CCCGUUUUGAGUAUC--CAGCAACC-U-GUA-UUA----------------------------------------------------------------ACA-A---GGUGCUA-AUUC--C-G-GCAUG----------U-------
+CP001818.1/1579334-1579230 C-UCUUAUCAAGAG-UGG-C-GG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC--CGGCAACC-U-GCA-GAGCACG---------------------------------------------------UCUCU----GCG-U---GGUGCCA-ACAC--CUG-CGGCG----------A-------
+CP003056.1/3328132-3328032 U-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGA--AAGG-CCCUU--UGAA-GCC-UCGGCAACA-G-GUU-GAAA---------------------------------------------------------------AAC-AC--UGUGCCA-AUUC--CUG-CAGAC--------AAU-------
+CP001778.1/452900-453004 A-CUUCAUCAAGAG-CGG-U-CG-----------------AGGGA--ACGG-CCCUG--CGAC-ACC-GCGGCAACC-A-CCC-AUC-----------------------------------------------------------C----GGG-CA--GGUGCCA-AAUC--CGU-CCGGCGU-----GACC-------
+CP001743.1/842385-842265 G-CCUUAUCCAGAG-CAG-C-GGACAGGGCAACUGCCCGACGGGA--ACGG-CCCGA--UGAA-GCU-GCGGCAACCU--GCC-AAA-----------------------------------------------------------G----GC--AA--GGUGCCA-AUUC--CGG-CCCGGCC-----UCUG-------
+CP001794.1/1767716-1767554 U----UAUCAAGAGUUGG-C-UG-----------------AGGGA-AUUGG-CCCAA--UGAA-GCC--CAGCAACC-G-ACC-GUAAUGCUAUCGUGAGAUAGGGCGCACGCCAAGGGCGGCGCCGGAAGCGUCAUGCUUCCGCAG----GGC-AC--GGUGCUA-AGUC--CAA-CAGAAAG-----ACCGAU-----
+CP001793.1/5775580-5775452 A-UCUUAUCAAGAGCAGG-U-GG-----------------AGGGA--CUAG-CCCUA--UGAA-ACC--CGGCAACCG--GCG-GCAAC-------------------------------------------------------AUC----GC--AC--GGUGCUA-AUUC--UUG-CAGGAGA-----UACGACGAUUG
+CP001736.1/1289540-1289681 U-GCUCAUCCAGAG-GGA-C-UG-----------------AGGGA-UACGG-CCCGU--UGAA-GUC-CCGGCAACCCU-CCC-CGUGGAGGCCCCGUCCU-------------------------------GGGGCCGCUCGCGGC----GGA-AC--GGUGCCA-AAUC--CGU-CCCACGC-----CGAGAUCC---
+ACDG02000015.1/15379-15466 A-UACCAUCAAGAG-AGA-U-UG-----------------AGGGA--CAGG-CCCUA--AGAU-AUC-UCAGCAACC-U-ACU-GGA---------------------------------------------------------AAA----GUG-U---GGUGCUA-ACUC--CUG------------------------
+AAXU02000001.1/3185191-3185093 A-GCUUAUCGAGAA-AGA-C-UG-----------------AGGGA--AGGG-CCCGA--CGAC-GUC-UUAGCAACC-U-GUA--------------------------------------------------------------------ACC-AA--GGUGCUA-AUUC--CCA-UCCCGAA-----UA-U-------
+CP001631.1/1935400-1935293 G-AAUCAUCGAGAG-CGG-U-GU-----------------AGGGA--CGGG-CCCUG--UGAU-ACC-GCGGCAACCAG-U-U-CGAUAC----------------------------------------------------GUCGA-----AC-CA--GGUGCCA-AU------G-CCCGAGC-----GAUGG------
+CP001738.1/890419-890560 C-GCUCAUCCAGAG-GGG-U-GG-----------------AGGGA--CCGG-CCCUG--UGAA-GCC-CCGGCAACC-C-UCC-CGGUGCUGACGCUCUCGCG--------------------------ACCUGCGAGGCCGGCCGG----GAC-AG--GGUGCCA-AUUC--CGG-CCCGCGA-----CCAAGG-----
+ABJI02000433.1/3689-3816 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA--ACGG-CCCGU--UGAA-GCC-CCGGCAACC-C-UCC-CGCCGACCGCGA-----------------------------------------GGUCACGGUG----GGG-AA--GGUGCCA-AUUC--CGU-CUCGUGG-----CGAAGUG----
+ABYU02000037.1/4945-4847 C-UCUUAUUCAGAG-UGA-U-GG-----------------AGAUACAUAGG-AUCUG--UGAA-GUC-ACGGCAACC-C-CGC-AUG-----------------------------------------------------------G----CGG-AA--GGUGCCA-ACCU--GAG-CGA-----------AU-------
+ACDZ02000006.1/93274-93376 U-ACUUAUCAAGAG-UGA-G-UG-----------------AGGGA-UAAGG-CCCGG--UGAA-CUC--CAGCAACC-U-AAU-CAA-U-------------------------------------------------------UGA----UUA-A---GGUGCUU-UCCU--UAG-CAAAG--------UUU-------
+CP003056.1/1844232-1844126 A-ACUUAUCAAGAG-AGG-G-GG-----------------AGGGA--CUGG-CCCGA--GGAA-ACC-UCAGCAACAGA-UUC-UUUUU-------------------------------------------------------GGG----AAU-AC--UGUGCUA-AUUC--CAG-CAAGCGU-----CAAG-------
+ACBY02000020.1/258141-258043 A-ACUUAUCAAGAG-UGG-C-AG-----------------AGGGG-ACAGG-CCCUG--UGAA-GCC--CGACAACC-U-ACA-CAAA--------------------------------------------------------UGU----GCA-A---GGUGCCA-AUUC--CUG-CGGGG------------------
+CP001656.1/5519557-5519455 U-UCUUAUCAAGAGCAGG-C-GG-----------------AGGGA--CUAG-CCCGA--UGAA-GCC--CGGCAACC-G-GCG-UAA----------------------------------------------------------------G-C-AC--GGUGCUA-AUUC--UUG-CGGAAAC-----AUUA-------
+CP001791.1/1324400-1324509 U-UCUUAUCCAGAG-CGG-C-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--CGGCAACC-A-UCA-CGAAA-------------------------------------------------------GUG----GAA-----GGUGCCA-AUUC--CAA-CAGAGCG-----UAUUCG-----
+ACJX02000007.1/318260-318153 C-UCUUAUCCAGAG-CGG-C-GG-----------------AGGGA--CUGG-CCCUG--CGAA-GCC--CGGCAACCU--GCU-UACCCUU--------------------------------------------------UGGGGA----GC--GU--GGUGCCA-AAAC--CUG-CAACC--------GAA-------
+CP001739.1/1846920-1847007 A-UAUCAUCAAGAG-GAA-C-UG-----------------AGAGA--CAGG-CUCUG--UGAC-GUU-CCAGCAACC-U-ACG-UAA---------------------------------------------------------AUC----GUG-U---GGUGCUA-AUUC--CUG------------------------
+CP001619.1/3294664-3294557 G-AUUUAUAAAGAA-GAG-G-CG-----------------AGAGA-AUGGG-CUCAA--CGAA-CCU-CUGGCAACCUG-CUA-CCACA------------------------------------------------------UCGG----AGA-AA--GGUGCUA-AUUC--CCA-CCUAA--------GUU-------
+CP001867.1/829496-829625 C-ACUCAUCCAGAG-GGG-C-AG-----------------AGGGA-CACGG-CCCGA--CGAA-GCC-CCGGCAACCGC-CGC-ACCGCGCGU----------------------------------------------CAGCGCAG----CGG-AA--GGUGCCA-AUUC--CGU-CCCGCGC-----GGCUCGACG--
+ACLF03000006.1/44662-44769 C-ACUCAUCACGAG-GGG-U-GG-----------------AGGGA--ACGG-CCCGC--UGAU-ACC-CCAGCAACC-A-GUC-GGUCU-------------------------------------------------------UCG----ACC-A---GGUGCUA-CGUC--CGU-CCCGGAG-----UCCG-------
+CP003056.1/732327-732208 U-UCUUAUCAAGAG-AGG-U-UG-----------------AGGGA--AUGG-CCCGA--UGAA-GCC-UCAGCAACC-U-UCA-AUGCUUUU------------------------------------------------ACGCAUU----GAA-AA--GGUGCUA-AGUC--CUG-CAAGUUAUGGGAUCAU-------
+CP001823.1/1231295-1231405 C-UCUUAUCCAGAG-UGG-U-GG-----------------AGGGA--ACGG-CCCGA--CGAA-GCC--CGGCAACC-G-ACG-GAUCGCA--------------------------------------------------CGGUCC----G-C-GC--GGUGCCA-AUUC--CGG-CAGCGGC-----GUUG-------
+CP001769.1/5132553-5132446 U-ACUUAUCCAGAA-AGA-C-GG-----------------AGGGA-CCGGA-CCCGA--UGAU-GUC-UUGGCAACC-A-ACC-AGCCC-------------------------------------------------------AGG----GGA-AU--GGUGCCA-AUUU--CCU-CCCGCCA-----GC-C-------
+ACCL02000003.1/136176-136276 C-UCUUAUUCAGAG-UGG-U-GG-----------------AGAUACAGAGG-GUCUG--UGAA-GCC-ACGGCAACC-C-CGC-AU----------------------------------------------------------AGA----CGG-AA--GGUGCCA-GCCU--GAG-CGA----------UUA-------
+ACKQ02000002.1/742513-742620 A-UGUUAUCAAGAA-AGG-U-UG-----------------AGGGA-UUAGA-CCCUG--UGAA-ACC-UUAGCAACC-C-UUU-GCGCA------------------------------------------------------AGUA----AAG-AA--GGUGCUA-CGUU--CUA-CCAAAA-------UAA-------
+ACIQ02000024.1/9596-9700 A-UCUUAUUCAGAGACGG-U-GG-----------------AGCUACAUAGG-AGCGA--AGAA-GCC-GCAGCAACC-C-CGG-AAA----------------------------------------------------------------CGG-AA--GGUGCUA-ACCU--GAG-CGAACAA------UUU-------
+ACHA02000006.1/124772-124667 C-GCUUAUAGAGAA-AGG-C-AG-----------------AGGGA-CUAGA-CCCAA--UGAA-GCC-UUGGCAACCU--GUC-UUG---------------------------------------------------------GAG----AC--AA--GGUGCUA-CAUU--CUA-CCCCACC-----UAAA-------
+CP001630.1/1349393-1349277 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA--UCGG-CCCGA--AGAA-GCC-CCGGCAACC-U-GUC-ACCAGUCAUCA-------------------------------------------GACUGGGUG----AUC-AC--GGUGCCA-AUUC--CGA-CCCGC--------GAA-------
+CP001661.1/2331226-2331122 A-ACUUAUCACGAG-CGA-C-CG-----------------AGGGA--CUGG-CCCCA--UGAC-GUC-GCGGCAACC-U-CCC-GUA-----------------------------------------------------------A----GGG-AA--GGUGCCA-AAUC--CAG-CGAAGCG-----GCGA-------
+CP002043.1/113014-112896 G-UCUUAUCCAGAG-CAG-C-GG-----------------AGGGA--ACGG-CCCUG--UGAA-GCU-GCGGCAACC-U-GCG-GAGGCCUUCU--------------------------------------------AAAGCGCCU----ACU-AA--GGUGCCA-AUUC--CGA-CCCGGUG-----GCCA-------
+URS000080DF35_32630/1-94 G-GCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACC----------------------------------------------------------------------AGAA----AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS000080DF35_32630/1-94 2GIS_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((......................................................................(........)..)).)))....(}..}}}.(((((..................
+URS000080E1B3_911092/1-94 G-GCUUAUCAAGAG-AGG-U-UU-----------------AGGGA--CUGG-CCCGA--CGAA-ACC--CGGCAACC----------------------------------------------------------------------AGAA----AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS000080E1B3_911092/1-94 2YDH_A_SS (.(((((((....(..((.(.....................(((....{{{.))).........)))..)(((..((......................................................................(........)..)).)))....(}..}}..(((((..................
+URS0000BC4670_911092/1-95 G-GCUUAUCAAGAG-AGG-U-GA-----------------AGGGA--CUGG-CCCGA--CGAA-ACC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS0000BC4670_911092/1-95 2YGH_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((..................
+URS000080E047_32630/1-94 G-GCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--CGAA-ACC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS000080E047_32630/1-94 3GX2_A_SS (.(((((((.......((.(.....................(((...{{{{.))).........)))...(((..((.(.............................................................................)..)).)))....(}..}}}.(((((..................
+#=GR URS000080E047_32630/1-94 3GX3_A_SS (.(((((((....(..((.(.....................(((.....{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}...(((((..................
+#=GR URS000080E047_32630/1-94 3GX5_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((..................
+#=GR URS000080E047_32630/1-94 3GX6_A_SS (.(((((((.......((.(.....................(((...{{{{.))).........)))...(((..((.(.............................................................................)..)).)))....(}..}}}.(((((..................
+URS000080E094_32630/1-94 G-GCUUCGCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--CGAA-ACC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS000080E094_32630/1-94 3GX7_A_SS (.(((((((.......((.(.....................(((...{{{{.))).........)))...(((..((.(.............................................................................)..)).)))....(}..}}}.(((((..................
+URS000080E279_32630/1-94 G-GCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAGCC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS000080E279_32630/1-94 3IQN_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.((.((..................
+URS000080DF1C_32630/1-94 G-GCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS000080DF1C_32630/1-94 3IQP_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((.(((.(.............................................................................)..))))))....(}..}}}.(((((..................
+#=GR URS000080DF1C_32630/1-94 3IQR_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((..................
+URS000080E09F_911092/1-126 G-GCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACC-A-CUA-GUCUAGCGUCAGCUUC--------------------------------GGCUGACGCUAGGCU----AGU-----GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS000080E09F_911092/1-126 3V7E_C_SS (.(((((((....(..((.(.....................(((.....{{.))).........)))..)(((..((.(.((..(((((((((((((....................................))))))))))))).....))).....)).)))....(}..}...(((((..................
+URS000080DF6B_911092/1-94 G-GCUUAUCAAGAG-AGG-G-CA-----------------AGAGA--CUGG-CUUGA--UGAC-CCC--CGGCAACC-A-----------------------------------------------------------------AAA--------AU--GGUGCCA-AUUC--CUG-CAGAG--------GAA-------
+#=GR URS000080DF6B_911092/1-94 4AOB_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((..................
+URS000080DFE5_911092/1-94 G-GCUUAUCAAGAG-AGG-G-GG-----------------AGCGA--CUGG-CGCGA--AGAA-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS000080DFE5_911092/1-94 4B5R_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((..................
+URS000080DDBE_1423/1-119 GUUCUUAUCAAGAG-AAG-C-AG-----------------AGGGA--CUGG-CCCGA--CGAA-GCU-UCAGCAACC-G-GUG-UAAUGGCGA----------------------------------------------AAGCCAUG----ACC-AA--GGUGCUA-AAUC--CAG-CAAGCUC-----GAAC-------
+#=GR URS000080DDBE_1423/1-119 4KQY_A_SS .((((((((....(.(.(.(.....................(((...{{{{.))).........))..))(((..((.(.((....(((((..................................................))))).....))).....)).)))....(}..}}}.(((((..................
+URS0000A7634F_911092/1-94 G-GCUUAUCAAGAG-AGG-G-GG-----------------AGUGA--CUGG-CGCGA--AGAA-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS0000A7634F_911092/1-94 5FJC_A_SS ..(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((..................
+URS0000A76377_911092/1-94 G-GCUUAUCAAGAG-AGG-G-GG-----------------AGCGA--CUGG-CGCGA--AGAU-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS0000A76377_911092/1-94 5FK1_A_SS (.(((((((.......((.(.....................(((...{{{{.))).........)))...(((..((.(.............................................................................)..)).)))....(}..}}}.(((((..................
+URS0000A76363_911092/1-94 G-GCUUAUCAAGAG-AGG-G-GG-----------------AGCGA--CUGG-CGCGA--AGAG-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS0000A76363_911092/1-94 5FK2_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((..................
+URS0000A76386_911092/1-94 G-GCUUAUCAAGAG-AGG-G-CG-----------------AGCGA--CUGG-CGCGA--AGAC-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS0000A76386_911092/1-94 5FK3_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((..................
+URS0000A7631C_911092/1-93 G-GCUUAUCAAGAG-AGG-G-UG-----------------AGCGA--CUGG-CGCGA--AGAU-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS0000A7631C_911092/1-93 5FK4_A_SS (.(((((((....(..((.(.(...................(((...{{{{.))).......).)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((..................
+URS0000A76359_911092/1-94 G-GCUUAUCAAGAG-AGG-G-AG-----------------AGCGA--CUGG-CGCGA--AGAA-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS0000A76359_911092/1-94 5FK5_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((..................
+URS0000A7635A_911092/1-94 G-GCUUAUCAAGAG-AGG-G-AG-----------------AGCGA--CUGG-CGCGA--AGAC-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS0000A7635A_911092/1-94 5FK6_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((..................
+URS0000A7635B_911092/1-94 G-GCUUAUCAAGAG-AGG-G-AG-----------------AGCGA--CUGG-CGCGA--AGAU-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS0000A7635B_911092/1-94 5FKD_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..).((..((.(.............................................................................)..)).)).....(}..}}}.(((((..................
+URS0000A7638A_911092/1-94 G-GCUUAUCAAGAG-AGG-G-UG-----------------AGCGA--CUGG-CGCGA--AGAG-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS0000A7638A_911092/1-94 5FKE_A_SS (.(((((((....(..((.(.(...................(((...{{{{.))).......).)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((..................
+URS0000A76399_911092/1-94 G-GCUUAUCAAGAG-AGG-G-CG-----------------AGCGA--CUGG-CGCGA--AGAU-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS0000A76399_911092/1-94 5FKF_A_SS (.(((((((.......((.(.....................(((...{{{{.))).........)))...(((..((.(.............................................................................)..)).)))....(}..}}}.(((((..................
+URS0000A76343_911092/1-94 G-GCUUAUCAAGAG-AGG-G-GG-----------------AGUGA--CUGG-CGCGA--AGAC-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS0000A76343_911092/1-94 5FKG_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((..................
+URS0000A76344_911092/1-94 G-GCUUAUCAAGAG-AGG-G-UG-----------------AGCGA--CUGG-CGCGA--AGAC-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS0000A76344_911092/1-94 5FKH_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((..................
+URS0002311979_119072/1-94 G-GCUUAUCAAGAG-AGG-G-CG-----------------AGGGA--CUGG-CCCGA--CGAC-CCC--CGGCAACC----------AG-------------------------------------------------------AA---------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA-------
+#=GR URS0002311979_119072/1-94 7EAF_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((..........(....................................................................)..)).)))....(}..}}}.(((((..................
+#=GC SS_cons (.(((((((,,,,<.<<<.<.--.................-<<<_..AAAA.>>>--..----.>>>.>><<<<-<<.<.<<<._____.......................................................__>....>>>.--..>>>>>>,.,,<a..aaa.<<<<<<_.....____.......
+#=GC RF c.ucUuAUcaAGAG.gGG.c.gG.................AGGGA..cuGG.CCCua..UGAA.gCC.cCgGCAACC.c.ccc.uuuuu.......................................................aag....ggg.Aa..GGUGCcA.AuuC..Cug.Cgggcca.....uaau.......
+#=GC RNA_motif_k_turn ===================X.XX.................XX============XXX..XXXX.X=======================================================================================================================================
+#=GC RNA_ligand_SAM =======X===X=============================================================X=======================================================================================XXX====================================
+#=GC RNA_structural_elements [=P1=5p=][J1][========================P2=============================][======================================P3=variable=SL=========================================][J3][============================P4
+
+AF027868.1/5245-5154 ----------------GCU-UG-A-AA-GAUAGGA-A--
+AF269983.1/571-671 -----------------CU-CG-A-AU-GAUAAGU-A--
+AJ000974.1/281-386 --------------CAUUU-UG-A-AA-GAUAAGG-G--
+AL596164.1/95936-95817 -------------CCGUUU-UG-G-UA-GAUAAGA-G--
+AL591974.1/109385-109266 -------------CCGUUU-UG-G-UA-GAUAAGA-G--
+U52812.1/691-829 -------------AUUCCU-UG-A-GC-GAUAAGA-G--
+AL596169.1/221462-221354 ---------------CUCC-UG-A-AC-GAUGAGA-G--
+AL591980.1/66651-66543 ---------------CUUC-UG-A-AC-GAUGAGA-G--
+AL596172.1/176254-176136 --------------UGUUC-UG-A-AA-GAUGAGA-A--
+AL591983.1/96176-96058 --------------UGUUC-UG-A-AA-GAUGAGA-A--
+AL596170.1/192-86 ---------------GCUU-CG-A-GA-GAUAAGA-G--
+AL591980.1/89597-89491 ---------------GCUU-CG-A-GA-GAUAAGA-G--
+AL939119.1/177986-178133 -------------GUCGUG-AG-G-AA-GAUGAGG-A--
+AB090330.1/380-279 ----------------AGC-UG-A-GA-GAUGAGG-A--
+U36379.1/1-106 ---------------GGUC-UG-A-AC-GAUAAGA-G--
+L42943.1/254-144 ---------------GGUC-UG-A-AC-GAUAAGA-G--
+AF270301.1/145-36 ---------------GGUC-UG-A-AC-GAUAAGA-G--
+AJ002571.1/38016-37861 ----------------GUC-UG-A-GA-GAUGAGA-G--
+AL596163.1/172398-172500 ---------------AUUC-UG-G-CA-GAUAAGU-A--
+AL591973.1/137133-137235 ---------------AUUC-UG-G-CA-GAUAAGU-A--
+AL596165.1/180914-180814 ----------------UUC-UG-A-AA-GAUAAGU-C--
+AL596166.1/166748-166844 -----------------AC-UG-A-CA-GAUAAGG-C--
+AL591976.1/242770-242867 -----------------AC-UG-A-CA-GAUAAGG-C--
+AE017333.1/969726-969839 ---------------GGCU-UG-G-AA-GAUAAGA-A--
+BX571856.1/15939-16037 ----------------ACU-CG-A-AU-GAUAAGU-A--
+AE017225.1/3092372-3092274 --------------UGUUC-UG-G-GA-GAUAAGA-C--
+AP006716.1/475254-475360 ---------------ACUU-UA-A-GA-GAUAAGA-G--
+AP006716.1/507636-507743 ---------------UGCC-UC-A-AA-GAUAAGU-G--
+BA000028.3/2365513-2365403 ---------------UCCU-UG-A-AC-AAUAAGA-G--
+AE017225.1/177275-177161 -------------UCGUUU-UG-G-AA-GAUAAGA-G--
+AP008934.1/131883-131770 -----------GAUUGAGU-UG-A-AA-GAUGGGA-A--
+AE017225.1/1375419-1375524 -----------------CU-UG-A-AA-GAUGAGA-A--
+CP000046.1/900604-900707 ----------------CUU-UU-G-AA-GAUGAGA-G--
+BA000043.1/974636-974744 ---------------ACGC-UG-A-GA-GAUAAGA-A--
+CP000001.1/185418-185523 ---------------GUCU-UG-A-AA-GAUAAGU-G--
+CP000001.1/3927237-3927096 --------------CUUUC-UG-G-CA-GAUAAGA-G--
+CP000046.1/2381002-2380907 ---------------UGGU-UU-G-AA-GAUAAGC-A--
+BA000028.3/3162073-3162182 ---------------CGUC-UG-G-AA-GAUAAGA-G--
+AE017355.1/3872413-3872520 ---------------ACGC-UG-A-CA-GAUAAGG-A--
+AP006840.1/2688754-2688649 ---------------GGUC-CG-A-GA-GAUGAAG-C--
+AE017333.1/1735574-1735680 --------------CAUUU-UG-A-GA-GAUAAGG-A--
+AE017355.1/4749676-4749569 ---------------GCUU-UG-A-GA-GAUGAGA-G--
+CP000029.1/480767-480869 -----------------UU-UA-G-AA-GAUGAGA-G--
+BA000043.1/883132-883242 ---------------AAUU-CG-G-CA-GAUAAGA-A--
+AP006627.1/604071-603968 ---------------GUCC-UG-G-GA-GAUAAGA-G--
+AE017355.1/1833727-1833836 --------------AGUCC-UA-A-UA-GAUAAGA-A--
+AP006627.1/3104693-3104588 --------------GGCUU-UG-G-GA-GAUGAGA-G--
+AE017334.2/197187-197081 ---------------AGCU-UG-A-AA-GAUAGAA-U--
+BA000043.1/972359-972191 ---------------UUUC-UG-A-AA-GAUAAGA-G--
+BA000043.1/2876470-2876356 ----------------CCU-UG-A-AC-GAUAAGA-G--
+BA000028.3/2134366-2134264 ---------------UUUC-UG-A-AA-GAUAAGG-U--
+BA000004.3/3590821-3590709 ---------------GCUU-UG-A-GA-GAUGAGA-G--
+AE017333.1/1487506-1487363 ----------------UUC-UG-A-GA-GAUAAGA-G--
+AE017180.1/2700118-2700220 ----------------AAG-GG-A-GC-GAUGAGA-G--
+AE017334.2/4074410-4074519 ---------------AAUU-UG-A-CA-GAUGAGA-A--
+AE017225.1/4554904-4554783 ---------------GUCU-CG-A-AC-GAUAAGA-G--
+BA000043.1/3025512-3025403 ---------------GCUU-UG-A-GA-GAUAAGA-G--
+BA000028.3/3200638-3200530 ---------------UGCU-UG-G-UA-GAUAAGA-G--
+AP006627.1/3008449-3008342 --------------CGUUC-UG-G-AA-GAUAAGA-G--
+AE017333.1/4014357-4014466 -------------GUGCUC-UU-G-AA-GAUAAGG-A--
+AE017225.1/320618-320724 ---------------GGCU-UG-G-AA-GAUGAGA-A--
+AE017333.1/3063716-3063609 -------------GCAUUC-UG-A-AA-GAUAAGU-U--
+AE017355.1/1384699-1384807 --------------CAUUU-UG-A-AA-GAUAAGG-U--
+AP006840.1/138157-138265 ----------------ACC-GG---GA-GAUAAGA-G--
+AE017333.1/1292148-1292264 -----------------CU-UG-G-AA-GAUAAGA-A--
+AE017355.1/768972-768867 ---------------GUGU-UG-A-AA-GAUAAGA-G--
+BA000045.2/2730826-2730714 ---------------GAAC-CG-G-AA-GAUAAGU-C--
+CP000029.1/1935501-1935405 ----------------GGU-UA-G-AA-GAUAAGG-U--
+AP006627.1/1705479-1705377 -----------------CC-UA-G-GA-GAUAAGA-A--
+AE017334.2/2953356-2953255 ---------------AACU-UG-A-AA-GAUAAGA-A--
+AE017355.1/2515876-2515991 ------------UGUUUUU-UG-G-AA-GAUAAGA-G--
+AP006627.1/1563582-1563686 -----------------UU-UG-G-CA-GAUAAGG-G--
+BA000004.3/910192-910088 ---------------GUUC-UG-A-AA-GAUAAGA-A--
+AE017225.1/4074580-4074471 ---------------GUUU-UG-C-AU-AAUAAGA-G--
+BA000028.3/1319041-1319141 ---------------AGCU-UG-A-AA-GAUAAGU-U--
+BA000028.3/727026-727131 ----------------GCC-UU-A-AA-GAUAAGA-A--
+AE009951.2/1317653-1317567 -----------------------A-GA-GAUGGAG-A--
+AP008934.1/276954-277060 --------------AACUU-UU-G-GA-GAUGAGA-G--
+AP006840.1/278272-278389 --------------CCCUC-CC-G-AA-GAUGAGA-G--
+AE017333.1/3302616-3302509 ---------------GCUU-UG-A-AA-GAUGAGA-G--
+AP008934.1/15667-15765 ---------------AC-U-CG-A-AU-GAUAAGU-A--
+CP000001.1/5213243-5213138 ----------------UCC-UG-A-GA-GAUAAGA-A--
+AE017355.1/388363-388251 --------------CAUUU-UG-A-AA-GAUAAAA-C--
+BA000028.3/2437307-2437208 ---------------AA---UG-A-AA-GAUGAGA-G--
+AP008934.1/1011112-1011223 ---------------CGUC-UG-A-AC-GAUAAGA-G--
+BA000004.3/1699957-1700066 ---------------UGCU-UG-A-GA-GAUAAGA-G--
+BA000028.3/2708645-2708539 ---------------UGCU-UG-A-AA-GAUAAGA-G--
+AP008934.1/318535-318643 ----------------ACU-UG-A-AA-GAUAGGU-G--
+BA000004.3/3427467-3427355 ---------------GCCU-UG-A-AA-GAUAAGA-G--
+AE006470.1/606189-606295 ---------------UCCG-GG-A-AA-GAUGAUG-U--
+AP006716.1/417999-418100 ---------------UUCC-UG-A-AA-GAUAAGA-A--
+BA000028.3/3466520-3466401 ---------------AUUU-UG-A-GA-AAUAAGA-G--
+BA000016.3/2500083-2499978 ---------------UCUU-UA-C-AA-GAUGAGA-G--
+AP008934.1/1948647-1948540 -------------AAACUU-UA-G-AA-GAUGAGA-G--
+CP000088.1/254824-254964 ------------GGCAGUG-GG-G-AA-GAUGAGG-G--
+AP006627.1/1701649-1701759 --------------UGUUC-UG-A-AA-GAUAAGU-G--
+AE017333.1/3080753-3080616 ---------------ACCU-UG-A-GC-GAUAAGA-G--
+AE017333.1/1489705-1489804 ---------------ACGC-UG-A-GA-GAUAAGG-A--
+AE017180.1/1014096-1014202 --------------GGUUU-CG-G-GA-GAUAAGG-A--
+AP006840.1/1830606-1830721 --------------GCCGC-CG-G-AA-GAUAAGA-G--
+AP006716.1/14213-14314 ----------------ACU-CG-A-AU-GAUAAGU-A--
+AE017333.1/1207733-1207622 ---------------UGCU-UG-G-AA-GAUAAGA-A--
+BA000028.3/1098099-1097993 -----------------GC-UA-G-AA-GAUGAGA-A--
+BA000043.1/745485-745383 -----------------CC-UG-G-AA-GAUAAGA-A--
+AP006627.1/1983212-1983311 ---------------AU-C-UG-C-AA-GAUAAGA-G--
+CP000001.1/334370-334474 --------------GGGCU-UG-G-AA-GAUGAGA-A--
+AP006627.1/951406-951512 --------------CAUUC-UG-A-AA-GAUAAGC-C--
+AP006716.1/2100177-2100072 ---------------ACUU-UA-G-AA-GAUGAGA-G--
+AP008934.1/616628-616728 ---------------AUGC-UA-G-AA-GAUAAGA-A--
+BA000004.3/1348816-1348929 --------------CAUUC-UG-G-AA-GAUAAGC-G--
+CP000141.1/2169978-2169874 ---------------AUUC-CG-G-GA-GAUAAGA-G--
+AM412317.1/1193313-1193415 ---------------AA-C-UG-A-AA-GAUGAGA-A--
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+CP001814.1/9846218-9846077 ------------GGUCGCA-GACG-AA-GAUGAGG-G--
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+CP002043.1/113014-112896 ---------------UCCG-GG-A-AA-GAUAAGG-A--
+URS000080DF35_32630/1-94 ---------------ACGU-UG-A-AA-GAUGAGC-CA-
+#=GR URS000080DF35_32630/1-94 2GIS_A_SS ................))).))....).))))))).)..
+URS000080E1B3_911092/1-94 ---------------ACGU-UG-A-AA-GAUGAGC-CG-
+#=GR URS000080E1B3_911092/1-94 2YDH_A_SS ................))).))....).))))))).)..
+URS0000BC4670_911092/1-95 ---------------ACGU-UG-A-AA-GAUGAGC-CGA
+#=GR URS0000BC4670_911092/1-95 2YGH_A_SS ................))).))....).))))))).)..
+URS000080E047_32630/1-94 ---------------ACGU-UG-A-AA-GAUGAGC-CG-
+#=GR URS000080E047_32630/1-94 3GX2_A_SS ................))).))....).))))))).)..
+#=GR URS000080E047_32630/1-94 3GX3_A_SS ................))).))....).))))))).)..
+#=GR URS000080E047_32630/1-94 3GX5_A_SS ................))).))....).))))))).)..
+#=GR URS000080E047_32630/1-94 3GX6_A_SS ................))).))....).))))))).)..
+URS000080E094_32630/1-94 ---------------ACGU-UG-A-AA-GCGGAGC-CG-
+#=GR URS000080E094_32630/1-94 3GX7_A_SS ................))).))....).))))))).)..
+URS000080E279_32630/1-94 ---------------ACGU-UG-A-AA-GAUGAGC-CG-
+#=GR URS000080E279_32630/1-94 3IQN_A_SS ................))..))....).))))))).)..
+URS000080DF1C_32630/1-94 ---------------ACGU-UG-A-AA-GAUGAGC-CG-
+#=GR URS000080DF1C_32630/1-94 3IQP_A_SS ................))).))....).))))))).)..
+#=GR URS000080DF1C_32630/1-94 3IQR_A_SS ................))).))....).))))))).)..
+URS000080E09F_911092/1-126 ---------------ACGU-UG-A-AA-GAUGAGC-CA-
+#=GR URS000080E09F_911092/1-126 3V7E_C_SS ................))).))....).))))))).)..
+URS000080DF6B_911092/1-94 ---------------ACGU-UG-A-AA-GAUGAGC-CA-
+#=GR URS000080DF6B_911092/1-94 4AOB_A_SS ................))).))....).))))))).)..
+URS000080DFE5_911092/1-94 ---------------ACGU-UG-A-AA-GAUGAGC-CG-
+#=GR URS000080DFE5_911092/1-94 4B5R_A_SS ................))).))....).))))))).)..
+URS000080DDBE_1423/1-119 ---------------AGCU-UG-G-AA-GAUAAGAAC--
+#=GR URS000080DDBE_1423/1-119 4KQY_A_SS ................))).))....).))))))))...
+URS0000A7634F_911092/1-94 ---------------ACGU-UG-A-AA-GAUGAGC-CG-
+#=GR URS0000A7634F_911092/1-94 5FJC_A_SS ................))).))....).)))))))....
+URS0000A76377_911092/1-94 ---------------ACGU-UG-A-AA-GAUGAGC-CG-
+#=GR URS0000A76377_911092/1-94 5FK1_A_SS ................))).))....).))))))).)..
+URS0000A76363_911092/1-94 ---------------ACGU-UG-A-AA-GAUGAGC-CG-
+#=GR URS0000A76363_911092/1-94 5FK2_A_SS ................))).))....).))))))).)..
+URS0000A76386_911092/1-94 ---------------ACGU-UG-A-AA-GAUGAGC-CG-
+#=GR URS0000A76386_911092/1-94 5FK3_A_SS ................))).))....).))))))).)..
+URS0000A7631C_911092/1-93 ---------------ACGU-UG-A-AA-GAUGAGC-C--
+#=GR URS0000A7631C_911092/1-93 5FK4_A_SS ................))).))....).))))))).)..
+URS0000A76359_911092/1-94 ---------------ACGU-UG-A-AA-GAUGAGC-CG-
+#=GR URS0000A76359_911092/1-94 5FK5_A_SS ................))).))....).))))))).)..
+URS0000A7635A_911092/1-94 ---------------ACGU-UG-A-AA-GAUGAGC-CA-
+#=GR URS0000A7635A_911092/1-94 5FK6_A_SS ................))).))....).))))))).)..
+URS0000A7635B_911092/1-94 ---------------ACGU-UG-A-AA-GAUGAGC-CG-
+#=GR URS0000A7635B_911092/1-94 5FKD_A_SS ................))).))....).))))))).)..
+URS0000A7638A_911092/1-94 ---------------ACGU-UG-A-AA-GAUGAGC-CG-
+#=GR URS0000A7638A_911092/1-94 5FKE_A_SS ................))).))....).))))))).)..
+URS0000A76399_911092/1-94 ---------------ACGU-UG-A-AA-GAUGAGC-CG-
+#=GR URS0000A76399_911092/1-94 5FKF_A_SS ................))).))....).))))))).)..
+URS0000A76343_911092/1-94 ---------------ACGU-UG-A-AA-GAUGAGC-CG-
+#=GR URS0000A76343_911092/1-94 5FKG_A_SS ................))).))....).))))))).)..
+URS0000A76344_911092/1-94 ---------------ACGU-UG-A-AA-GAUGAGC-CG-
+#=GR URS0000A76344_911092/1-94 5FKH_A_SS ................))).))....).))))))).)..
+URS0002311979_119072/1-94 ---------------ACGU-UG-A-AA-GAUGAGC-CG-
+#=GR URS0002311979_119072/1-94 7EAF_A_SS ................))).))....).))))))).)..
+#=GC SS_cons ...............>>>>.>>.-.->.))))))).)..
+#=GC RF ...............ggcc.cG.a.aa.gAUaAga.g..
+#=GC RNA_motif_k_turn =======================================
+#=GC RNA_ligand_SAM ==============================X========
+#=GC RNA_structural_elements ===========================][=P1=3p=]==
+//
git://source.jalview.org / jalview.git / commitdiff