initialise current and defaultAlignFrame and debug when applet is reinited after...

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index f23cbde..7ae85dc 100755 (executable)
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -295,13 +295,13 @@ public class JalviewLite extends Applet
    * AlignFrame if the applet is started as embedded on the page and then
    * afterwards a new view is created.
    */
-  public static AlignFrame currentAlignFrame;
+  public static AlignFrame currentAlignFrame=null;
 
   /**
    * This is the first frame to be displayed, and does not change. API calls
    * will default to this instance if currentAlignFrame is null.
    */
-  AlignFrame initialAlignFrame;
+  AlignFrame initialAlignFrame=null;
 
   boolean embedded = false;
 
@@ -310,13 +310,14 @@ public class JalviewLite extends Applet
 
   public boolean jmolAvailable = false;
 
-  public static boolean debug;
+  public static boolean debug=false;
 
   /**
    * init method for Jalview Applet
    */
   public void init()
   {
+    
     /**
      * turn on extra applet debugging
      */