<phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
<phylogeny rooted="true" rerootable="false">
<clade>
- <name>cellular_organisms</name>
+ <name>cellular organisms</name>
<clade>
<taxonomy>
<scientific_name>Neomura</scientific_name>
<scientific_name>Macaca mulatta</scientific_name>
<common_name>Rhesus macaque</common_name>
<rank>species</rank>
- <uri>http://www.biolib.cz/IMG/GAL/39329.jpg</uri>
+ <uri>http://www.our-pets.net/images/rhesus1.jpg</uri>
</taxonomy>
</clade>
<clade>
<common_name>Bovine</common_name>
<synonym>Bos bovis</synonym>
<rank>species</rank>
- <uri>http://www.biolib.cz/IMG/GAL/18578.jpg</uri>
+ <uri>http://www.biopix.eu/photos/jcs-bos-taurus-(dansk-rodbroget-kvaeg)-22141.jpg</uri>
</taxonomy>
</clade>
<clade>
<scientific_name>Ornithorhynchus anatinus</scientific_name>
<common_name>Duckbill platypus</common_name>
<rank>species</rank>
- <uri>http://www.biolib.cz/IMG/GAL/39610.jpg</uri>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/1/12/Platypus_BrokenRiver_QLD_Australia2.png</uri>
</taxonomy>
</clade>
</clade>
<common_name>Nile tilapia</common_name>
<synonym>Tilapia nilotica</synonym>
<rank>species</rank>
- <uri>http://www.biolib.cz/IMG/GAL/87809.jpg</uri>
+ <uri>http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg</uri>
</taxonomy>
</clade>
</clade>
<common_name>Florida lancelet</common_name>
<synonym>Amphioxus</synonym>
<rank>species</rank>
- <uri>http://genome.jgi-psf.org/Brafl1/Amphioxus-1.jpg</uri>
+ <uri>http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg</uri>
</taxonomy>
</clade>
</clade>
<id provider="uniprot">134558</id>
<scientific_name>Ministeria vibrans</scientific_name>
<rank>species</rank>
+ <uri>http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg</uri>
</taxonomy>
</clade>
</clade>
<rank>phylum</rank>
</taxonomy>
<clade>
- <name>Pezizomycotina_Saccharomycetales</name>
+ <name>Pezizomycotina & Saccharomycetales</name>
<clade>
<taxonomy>
<id provider="uniprot">147538</id>
<common_name>Wheat head blight fungus</common_name>
<synonym>Fusarium graminearum</synonym>
<rank>species</rank>
+ <uri>http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg</uri>
</taxonomy>
</clade>
<clade>
- <name>TRIVE</name>
<taxonomy>
<id provider="uniprot">29875</id>
- <code>TRIVE</code>
- <scientific_name>Trichoderma virens</scientific_name>
+ <code>HYPVI</code>
+ <scientific_name>Hypocrea virens</scientific_name>
<common_name>Gliocladium virens</common_name>
<synonym>Trichoderma virens</synonym>
+ <synonym>Gliocladium flavofuscum</synonym>
<rank>species</rank>
+ <uri>http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg</uri>
</taxonomy>
</clade>
</clade>
<common_name>Rice blast fungus</common_name>
<synonym>Pyricularia grisea</synonym>
<rank>species</rank>
+ <uri>http://www.forestryimages.org/images/768x512/5369002.jpg</uri>
</taxonomy>
</clade>
</clade>
<synonym>Exserohilum turcicum</synonym>
<synonym>Helminthosporium turcicum</synonym>
<rank>species</rank>
- <uri>http://www.pflanzenkrankheiten.ch/diseases/STU/figures_STU/HTU_Mais_Mik_7_k.jpg</uri>
- <uri>http://www.pflanzenkrankheiten.ch/diseases/STU/figures_STU/Exserohilum_turcicum_001_k.jpg</uri>
+ <uri>http://openi.nlm.nih.gov/imgs/rescaled512/3017769_1471-2229-10-103-3.png</uri>
</taxonomy>
</clade>
</clade>
<scientific_name>Tuber melanosporum (strain Mel28)</scientific_name>
<common_name>Perigord black truffle</common_name>
<synonym>Tuber melanosporum Mel28</synonym>
- <uri>http://www.gmvmonza.org/images%20parco/Tuber%20melanosporum%20p106.jpg</uri>
+ <uri>http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg</uri>
</taxonomy>
</clade>
</clade>
<common_name>Bicoloured deceiver</common_name>
<synonym>Laccaria laccata var. bicolor</synonym>
<rank>species</rank>
- <uri>https://www.llnl.gov/news/newsreleases/2006/images/Laccaria_big.jpg</uri>
+ <uri>http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG</uri>
</taxonomy>
</clade>
</clade>
<scientific_name>Serpula lacrymans</scientific_name>
<common_name>dry rot fungus</common_name>
<rank>species</rank>
- <uri>http://www.biolib.cz/IMG/GAL/BIG/18135.jpg</uri>
+ <uri>http://www.anbg.gov.au/fungi/images/0160.jpg</uri>
</taxonomy>
</clade>
</clade>
<id provider="uniprot">202697</id>
<scientific_name>Jaapia argillacea</scientific_name>
<rank>species</rank>
- <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Jaapia-argillacea.jpeg/640px-Jaapia-argillacea.jpeg</uri>
+ <uri>http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg</uri>
</taxonomy>
</clade>
</clade>
<scientific_name>Gloeophyllum trabeum</scientific_name>
<common_name>Brown rot fungus</common_name>
<rank>species</rank>
- <uri>http://www.cbs.knaw.nl/images/Images_CBSFungi/CD/0001/0008/Gloeophyllum_trabeum.jpg</uri>
+ <uri>http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg</uri>
</taxonomy>
</clade>
</clade>
<scientific_name>Thellungiella halophila</scientific_name>
<common_name>Salt cress</common_name>
<rank>species</rank>
- <uri>http://thellungiella.org/images/thellun1.jpg</uri>
+ <uri>http://mplant.oxfordjournals.org/content/2/1/3/F1.large.jpg</uri>
</taxonomy>
</clade>
</clade>
<common_name>Flooded gum</common_name>
<rank>species</rank>
<uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>
- <uri>http://www.anbg.gov.au/projects/eucalypts/images/eucalyptus-grandis-bark.jpg</uri>
</taxonomy>
</clade>
</clade>
<common_name>Currant tomato</common_name>
<synonym>Lycopersicon pimpinellifolium</synonym>
<rank>species</rank>
- <uri>http://botany.csdl.tamu.edu/FLORA/hdwimages2/hdwt4-14.jpg</uri>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/b/b8/Currant_tomato.jpg</uri>
</taxonomy>
</clade>
</clade>
<clade>
<taxonomy>
- <id provider="4113">uniprot</id>
+ <id provider="uniprot">4113</id>
<code>SOLTU</code>
<scientific_name>Solanum tuberosum</scientific_name>
<common_name>Potato</common_name>
<rank>species</rank>
- <uri>http://www.hear.org/starr/images/images/plants/600/starr-080914-9947.jpg</uri>
+ <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0508/0344.jpeg</uri>
</taxonomy>
</clade>
</clade>
<reference doi="10.1073/pnas.0712248105">
</reference>
<clade>
- <name>Heterokonta_Alveolata</name>
+ <name>Heterokonta & Alveolata</name>
<clade>
- <name>Alveolata</name>
<taxonomy>
<id provider="uniprot">33630</id>
<scientific_name>Alveolata</scientific_name>
git://source.jalview.org / jalview.git / commitdiff