JAL-1766 update HTSJDK to Version 1.133

diff --git a/.classpath b/.classpath
index 90323de..46988ce 100644 (file)
--- a/.classpath
+++ b/.classpath
@@ -51,7 +51,7 @@
        <classpathentry kind="lib" path="lib/VARNAv3-91.jar"/>
        <classpathentry kind="lib" path="lib/jfreesvg-2.1.jar"/>
        <classpathentry kind="lib" path="lib/quaqua-filechooser-only-8.0.jar"/>
-       <classpathentry kind="lib" path="lib/htsjdk-1.120-SNAPSHOT.jar"/>
+       <classpathentry kind="lib" path="lib/htsjdk-1.133.jar"/>
        <classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin"/>
        <classpathentry kind="lib" path="lib/xml-apis.jar"/>
        <classpathentry kind="con" path="org.eclipse.jdt.junit.JUNIT_CONTAINER/4"/>

diff --git a/lib/htsjdk-1.120-SNAPSHOT.jar b/lib/htsjdk-1.120-SNAPSHOT.jar
deleted file mode 100644 (file)
index be2be05..0000000
Binary files a/lib/htsjdk-1.120-SNAPSHOT.jar and /dev/null differ

diff --git a/lib/htsjdk-1.133.jar b/lib/htsjdk-1.133.jar
new file mode 100644 (file)
index 0000000..f084258
Binary files /dev/null and b/lib/htsjdk-1.133.jar differ

diff --git a/utils/InstallAnywhere/Jalview.iap_xml b/utils/InstallAnywhere/Jalview.iap_xml
index b65fc3b..4a9d96b 100755 (executable)
--- a/utils/InstallAnywhere/Jalview.iap_xml
+++ b/utils/InstallAnywhere/Jalview.iap_xml
@@ -2360,7 +2360,7 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[664]]></string>
                                                        </property>
                                                        <property name="sourceName">
-                                                               <string><![CDATA[htsjdk-1.120-SNAPSHOT.jar]]></string>
+                                                               <string><![CDATA[htsjdk-1.133.jar]]></string>
                                                        </property>
                                                        <property name="overrideUnixPermissions">
                                                                <boolean>false</boolean>
@@ -2378,7 +2378,7 @@ and any path to a file to save to the file]]></string>
                                                                <boolean>true</boolean>
                                                        </property>
                                                        <property name="destinationName">
-                                                               <string><![CDATA[htsjdk-1.120-SNAPSHOT.jar]]></string>
+                                                               <string><![CDATA[htsjdk-1.133.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
                                                                <long>16046</long>