<tr>
<td>
<div align="center"><strong><a name="Jalview2.6">2.6</a></strong><br>
- <em>X/7/2010</em></div>
+ <em>23/9/2010</em></div>
</td>
- <td>
+ <td><em>Application</em>
<ul>
- <li>Changed minimum Java version required for Jalview<br>
- When used with Jmol, JalviewLite needs at least Java 1.5<br>
- The application needs at least 1.6.</li>
- <li>Updated embedded Jmol to series 12.XX<br><strong>See note about use of applet with Jmol</strong></li>
-
+ <li>Support for <strong>Ja</strong>va <strong>b</strong>ioinformatics
+ <strong>a</strong>nalysis <strong>w</strong>eb <strong>s</strong>ervices (JABAWS)</li>
+ <li>Web Services preference tab</li>
+ <li>Analysis parameters dialog box and user defined preferences</li>
+ <li>Improved speed and layout of Envision2 service menu</li>
+ <li>Superpose structures using associated sequence alignment</li>
+ <li>Export coordinates and projection as CSV from PCA viewer</li>
</ul>
<em>Applet</em>
<ul>
- <li></li>
+ <li>enable javascript: execution by the applet via the link out
+ mechanism</li>
+ </ul>
+ <em>Other</em>
+ <ul>
+ <li>Updated the Jmol Jalview interface to work with Jmol series
+ 12</li>
+ <li>The Jalview Desktop and JalviewLite applet now require Java
+ 1.5</li>
+ <li>Allow Jalview feature colour specification for GFF sequence
+ annotation files</li>
+ <li>New 'colour by label' keword in jalview feature file type
+ colour specification</li>
+ <li>New Jalview Desktop Groovy API method that allows a script
+ to check if it being run in an interactive session or in a batch
+ operation from the jalview command line</li>
+ </ul>
+ </td>
+ <td>
+ <ul>
+ <li>clustalx colourscheme colours Ds preferentially when both
+ D+E are present in over 50% of the column</li>
</ul>
+
<em>Application</em>
<ul>
- <li>Jalview 2 Web Services</li>
- <li>Web Services configuration tab in preferences</li>
+ <li>typo in AlignmentFrame->View->Hide->all but
+ selected Regions menu item</li>
+ <li>sequence fetcher replaces ',' for ';' when the ',' is part
+ of a valid accession ID</li>
+ <li>fatal OOM if object retrieved by sequence fetcher runs out
+ of memory</li>
+ <li>unhandled Out of Memory Error when viewing pca analysis
+ results</li>
+ <li>InstallAnywhere builds fail to launch on OS X java 10.5
+ update 4 (due to apple Java 1.6 update)</li>
+ <li>Installanywhere Jalview silently fails to launch</li>
+ </ul>
+ <em>Applet</em>
+ <ul>
+ <li>Jalview.getFeatureGroups() raises an
+ ArrayIndexOutOfBoundsException if no feature groups are defined.</li>
</ul>
</td>
- <td></td>
</tr>
<tr>
<td>