cut and paste input output

diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java
index 6d3f073..5292de9 100755 (executable)
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -952,31 +952,6 @@ public class PopupMenu extends JPopupMenu
         groupName.setText(reply);\r
     }\r
 \r
-    /**\r
-     * DOCUMENT ME!\r
-     *\r
-     * @param e DOCUMENT ME!\r
-     */\r
-    protected void analyze_actionPerformed(ActionEvent e)\r
-    {\r
-        CutAndPasteTransfer cap = new CutAndPasteTransfer();\r
-        JInternalFrame frame = new JInternalFrame();\r
-        frame.setContentPane(cap);\r
-        Desktop.addInternalFrame(frame, "Analyze this - ", 400, 300);\r
-\r
-        SequenceGroup sg = getGroup();\r
-        StringBuffer sb = new StringBuffer();\r
-\r
-        for (int i = 0; i < sg.getSize(false); i++)\r
-        {\r
-            Sequence tmp = (Sequence) sg.getSequences(false).elementAt(i);\r
-            sb.append(tmp.getSequence(sg.getStartRes(), sg.getEndRes() + 1));\r
-            sb.append("\n");\r
-        }\r
-\r
-        sb.append("Something amazing will happen soon");\r
-        cap.setText(sb.toString());\r
-    }\r
 \r
     /**\r
      * DOCUMENT ME!\r
@@ -1255,6 +1230,7 @@ public class PopupMenu extends JPopupMenu
   public void outputText_actionPerformed(ActionEvent e)\r
   {\r
     CutAndPasteTransfer cap = new CutAndPasteTransfer();\r
+    cap.setForInput(null);\r
     Desktop.addInternalFrame(cap,\r
                              "Alignment output - " + e.getActionCommand(), 600,\r
                              500);\r