Edited wiki page GSDI through web user interface.

diff --git a/wiki/GSDI.wiki b/wiki/GSDI.wiki
index 27b1b7b..f662060 100644 (file)
--- a/wiki/GSDI.wiki
+++ b/wiki/GSDI.wiki
@@ -29,9 +29,9 @@ Must be in phyloXML format unless option -q is used.
 === Output ===
 
 Besides the main output of a gene tree with duplications and speciations assigned to all of its internal nodes, this program also produces the following:
-  * a log file, ending in "_gsdi_log.txt"
-  * a species tree file which only contains external nodes with were needed for the reconciliation, ending in "_species_tree_used.xml"
-  * if the gene tree contains species with scientific species names such as "Pyrococcus horikoshii strain ATCC 700860" and if a mapping cannot be establish bases on these, GSDI will attempt to map by removing the "strain" (or "subspecies") information, these will be listed in a file ending in "_gsdi_remapped.txt".
+  * a log file, ending in '_gsdi_log.txt'
+  * a species tree file which only contains external nodes with were needed for the reconciliation, ending in '_species_tree_used.xml'
+  * if the gene tree contains species with scientific species names such as "Pyrococcus horikoshii strain ATCC 700860" and if a mapping cannot be establish bases on these, GSDI will attempt to map by removing the "strain" (or "subspecies") information, these will be listed in a file ending in '_gsdi_remapped.txt'.
 
 === Example ===
 gsdi -g gene_tree.xml tree_of_life.xml out.xml