* -g: to allow stripping of gene tree nodes without a matching species in the species tree
- * -m: use most parimonious duplication model for GSDI:
- assign nodes as speciations which would otherwise be assiged
- as potential duplications due tp polytomies in the species tree
+ * -m: use most parimonious duplication model for GSDI: assign nodes as speciations which would otherwise be assiged as potential duplications due tp polytomies in the species tree
* -q: to allow species tree in other formats than phyloXML (i.e. Newick, NHX, Nexus)
* -b: to use SDIse algorithm instead of GSDI algorithm (for binary species trees)