parseFeaturesFile

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index bdfe3ae..50faf67 100755 (executable)
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -105,8 +105,8 @@ public class Jalview
           try\r
           {\r
             UIManager.setLookAndFeel(\r
-                   UIManager.getSystemLookAndFeelClassName()\r
-            //        UIManager.getCrossPlatformLookAndFeelClassName()\r
+                UIManager.getSystemLookAndFeelClassName()\r
+                //        UIManager.getCrossPlatformLookAndFeelClassName()\r
 //"com.sun.java.swing.plaf.gtk.GTKLookAndFeel"\r
 //"javax.swing.plaf.metal.MetalLookAndFeel"\r
 //"com.sun.java.swing.plaf.windows.WindowsLookAndFeel"\r
@@ -168,13 +168,13 @@ public class Jalview
             data = aparser.getValue("groups");\r
             if (data != null)\r
             {\r
-              af.parseGroupsFile(data);\r
+              af.parseFeaturesFile(data, protocol);\r
               System.out.println("Added "+data);\r
             }\r
             data = aparser.getValue("features");\r
             if (data != null)\r
             {\r
-              af.parseGroupsFile(data);\r
+              af.parseFeaturesFile(data, protocol);\r
               System.out.println("Added "+data);\r
             }\r
 \r