==== Species tree ====
Must be in phyloXML format unless option -q is used.
+=== Taxonomic mapping between gene and species tree ===
+
+GSDI can establish a taxonomic mapping between gene and species tree on the following three data fields:
+ * scientific names (e.g. "Pyrococcus horikoshii")
+ * taxonomic identifiers (e.g. "35932" from uniprot or ncbi)
+ * taxonomy codes (e.g. "PYRHO")
+
=== Output ===
Besides the main output of a gene tree with duplications and speciations assigned to all of its internal nodes, this program also produces the following: