--- /dev/null
+<?xml version="1.0" encoding="UTF-8"?>
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+<phylogeny rooted="true" rerootable="false">
+ <clade>
+ <name>cellular organisms</name>
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+ <scientific_name>Eukaryota</scientific_name>
+ <rank>superkingdom</rank>
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+ <name>Unikonta</name>
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+ <name>Opisthokonta & Apusozoa</name>
+ <clade>
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+ <scientific_name>Opisthokonta</scientific_name>
+ <common_name>Fungi/Metazoa group</common_name>
+ </taxonomy>
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+ <taxonomy>
+ <scientific_name>Holozoa</scientific_name>
+ </taxonomy>
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+ <name>Choanoflagellatea & Metazoa</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">33208</id>
+ <scientific_name>Metazoa</scientific_name>
+ <rank>kingdom</rank>
+ </taxonomy>
+ <clade>
+ <name>Eumetazoa</name>
+ <reference doi="10.1038/nature06614">
+ </reference>
+ <clade>
+ <name>Bilateria & Cnidaria</name>
+ <clade>
+ <name>Bilateria</name>
+ <clade>
+ <name>Deuterostomia</name>
+ <reference doi="10.1038/nature04336">
+ </reference>
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+ <taxonomy>
+ <id provider="uniprot">7711</id>
+ <scientific_name>Chordata</scientific_name>
+ <rank>phylum</rank>
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+ <name>Urochordata & Vertebrata</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">7742</id>
+ <scientific_name>Vertebrata</scientific_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">7776</id>
+ <scientific_name>Gnathostomata</scientific_name>
+ <common_name>jawed vertebrates</common_name>
+ <rank>superclass</rank>
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+ <taxonomy>
+ <id provider="uniprot">117571</id>
+ <scientific_name>Euteleostomi</scientific_name>
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+ <name>Tetrapoda</name>
+ <clade>
+ <name>Amniota</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">40674</id>
+ <scientific_name>Mammalia</scientific_name>
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+ <name>Theria</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9347</id>
+ <scientific_name>Eutheria</scientific_name>
+ <common_name>Placental mammals</common_name>
+ </taxonomy>
+ <reference doi="10.1002/bies.200900053">
+ <desc>The new framework for understanding placental mammal evolution</desc>
+ </reference>
+ <clade>
+ <taxonomy>
+ <scientific_name>Boreoeutheria</scientific_name>
+ <synonym>Boreotheria</synonym>
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+ <taxonomy>
+ <id provider="uniprot">314146</id>
+ <scientific_name>Euarchontoglires</scientific_name>
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+ <scientific_name>Euarchonta</scientific_name>
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+ <taxonomy>
+ <id provider="uniprot">9443</id>
+ <scientific_name>Primates</scientific_name>
+ <rank>order</rank>
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+ <taxonomy>
+ <id provider="uniprot">376913</id>
+ <scientific_name>Haplorrhini</scientific_name>
+ <rank>suborder</rank>
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+ <clade>
+ <taxonomy>
+ <id provider="uniprot">314293</id>
+ <scientific_name>Simiiformes</scientific_name>
+ <rank>infraorder</rank>
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+ <taxonomy>
+ <id provider="uniprot">9526</id>
+ <scientific_name>Catarrhini</scientific_name>
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+ <taxonomy>
+ <id provider="uniprot">314295</id>
+ <scientific_name>Hominoidea</scientific_name>
+ <common_name>Apes</common_name>
+ <rank>superfamily</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9604</id>
+ <scientific_name>Hominidae</scientific_name>
+ <common_name>Great apes</common_name>
+ <rank>family</rank>
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+ <taxonomy>
+ <id provider="uniprot">207598</id>
+ <scientific_name>Homininae</scientific_name>
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+ <scientific_name>Hominini</scientific_name>
+ <rank>tribe</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9606</id>
+ <code>HUMAN</code>
+ <scientific_name>Homo sapiens</scientific_name>
+ <common_name>Human</common_name>
+ <rank>species</rank>
+ <uri>http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg</uri>
+ </taxonomy>
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+ <taxonomy>
+ <id provider="uniprot">9598</id>
+ <code>PANTR</code>
+ <scientific_name>Pan troglodytes</scientific_name>
+ <common_name>Chimpanzee</common_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9595</id>
+ <code>GORGO</code>
+ <scientific_name>Gorilla gorilla gorilla</scientific_name>
+ <common_name>Western lowland gorilla</common_name>
+ <rank>subspecies</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9601</id>
+ <code>PONAB</code>
+ <scientific_name>Pongo abelii</scientific_name>
+ <common_name>Sumatran orangutan</common_name>
+ <synonym>Pongo pygmaeus abelii</synonym>
+ <rank>species</rank>
+ <uri>http://www.ism.ac.jp/~hasegawa/photos/animal3b.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">61853</id>
+ <code>NOMLE</code>
+ <scientific_name>Nomascus leucogenys</scientific_name>
+ <common_name>Northern white-cheeked gibbon</common_name>
+ <synonym>Hylobates leucogenys</synonym>
+ <synonym>Hylobates concolor leucogenys</synonym>
+ <rank>species</rank>
+ <uri>http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png</uri>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9528</id>
+ <scientific_name>Cercopithecinae</scientific_name>
+ <rank>subfamily</rank>
+ </taxonomy>
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+ <taxonomy>
+ <id provider="uniprot">9544</id>
+ <code>MACMU</code>
+ <scientific_name>Macaca mulatta</scientific_name>
+ <common_name>Rhesus macaque</common_name>
+ <rank>species</rank>
+ <uri>http://www.our-pets.net/images/rhesus1.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9557</id>
+ <code>PAPHA</code>
+ <scientific_name>Papio hamadryas</scientific_name>
+ <common_name>Hamadryas baboon</common_name>
+ <rank>species</rank>
+ <uri>http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9483</id>
+ <code>CALJA</code>
+ <scientific_name>Callithrix jacchus</scientific_name>
+ <common_name>White-tufted-ear marmoset</common_name>
+ <synonym>Callithrix jacchus jacchus</synonym>
+ <rank>species</rank>
+ <uri>http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9478</id>
+ <code>TARSY</code>
+ <scientific_name>Tarsius syrichta</scientific_name>
+ <common_name>Philippine tarsier</common_name>
+ <rank>species</rank>
+ <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">376911</id>
+ <scientific_name>Strepsirrhini</scientific_name>
+ <rank>suborder</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">30608</id>
+ <code>MICMU</code>
+ <scientific_name>Microcebus murinus</scientific_name>
+ <common_name>Lesser mouse lemur</common_name>
+ <rank>species</rank>
+ <uri>http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">30611</id>
+ <code>OTOGA</code>
+ <scientific_name>Otolemur garnettii</scientific_name>
+ <common_name>Garnett's greater bushbaby</common_name>
+ <synonym>Galago garnetti</synonym>
+ <synonym>Small-eared galago</synonym>
+ <synonym>Garnett's greater bushbaby</synonym>
+ <rank>species</rank>
+ <uri>http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">37347</id>
+ <code>TUPBE</code>
+ <scientific_name>Tupaia belangeri</scientific_name>
+ <common_name>Common tree shrew</common_name>
+ <synonym>Tupaia glis belangeri</synonym>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">314147</id>
+ <scientific_name>Glires</scientific_name>
+ <common_name>Rodents and rabbits</common_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9989</id>
+ <scientific_name>Rodentia</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <name>Ctenohystrica & Mouse-related clade</name>
+ <reference doi="10.1186/1471-2148-9-71">
+ <desc>Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.</desc>
+ </reference>
+ <clade>
+ <taxonomy>
+ <common_name>Mouse-related clade</common_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">337687</id>
+ <scientific_name>Muroidea</scientific_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">39107</id>
+ <scientific_name>Murinae</scientific_name>
+ <rank>subfamily</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">10090</id>
+ <code>MOUSE</code>
+ <scientific_name>Mus musculus</scientific_name>
+ <common_name>Mouse</common_name>
+ <rank>species</rank>
+ <uri>http://www.nsrl.ttu.edu/tmot1/images/mus_musc.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">10116</id>
+ <code>RAT</code>
+ <scientific_name>Rattus norvegicus</scientific_name>
+ <common_name>Rat</common_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">10036</id>
+ <code>MESAU</code>
+ <scientific_name>Mesocricetus auratus</scientific_name>
+ <common_name>Golden hamster</common_name>
+ <rank>species</rank>
+ <uri>http://www.dicts.info/img/ud/syrian_hamster.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">10020</id>
+ <code>DIPOR</code>
+ <scientific_name>Dipodomys ordii</scientific_name>
+ <common_name>Ord's kangaroo rat</common_name>
+ <rank>species</rank>
+ <uri>http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">10141</id>
+ <code>CAVPO</code>
+ <scientific_name>Cavia porcellus</scientific_name>
+ <common_name>Guinea pig</common_name>
+ <rank>species</rank>
+ <uri>http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">43179</id>
+ <code>SPETR</code>
+ <scientific_name>Spermophilus tridecemlineatus</scientific_name>
+ <common_name>Thirteen-lined ground squirrel</common_name>
+ <synonym>Ictidomys tridecemlineatus</synonym>
+ <rank>species</rank>
+ <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9975</id>
+ <scientific_name>Lagomorpha</scientific_name>
+ <common_name>Rabbits, hares, pikas</common_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9978</id>
+ <code>OCHPR</code>
+ <scientific_name>Ochotona princeps</scientific_name>
+ <common_name>Southern American pika</common_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9986</id>
+ <code>RABIT</code>
+ <scientific_name>Oryctolagus cuniculus</scientific_name>
+ <common_name>Rabbit</common_name>
+ <rank>species</rank>
+ <uri>http://greennature.com/gallery/farm-animal-pictures/albino_rabbit.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">314145</id>
+ <scientific_name>Laurasiatheria</scientific_name>
+ <rank>superorder</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <scientific_name>Scrotifera</scientific_name>
+ </taxonomy>
+ <clade>
+ <name>Perissodactyla & Cetartiodactyla & Chiroptera</name>
+ <clade>
+ <name>Perissodactyla & Cetartiodactyla</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">91561</id>
+ <scientific_name>Cetartiodactyla</scientific_name>
+ <common_name>Even-toed ungulates</common_name>
+ </taxonomy>
+ <clade>
+ <name>Cetruminantia & Suina</name>
+ <clade>
+ <taxonomy>
+ <scientific_name>Cetruminantia</scientific_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9895</id>
+ <scientific_name>Bovidae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9913</id>
+ <code>BOVIN</code>
+ <scientific_name>Bos taurus</scientific_name>
+ <common_name>Bovine</common_name>
+ <synonym>Bos bovis</synonym>
+ <rank>species</rank>
+ <uri>http://www.biopix.eu/photos/jcs-bos-taurus-(dansk-rodbroget-kvaeg)-22141.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9940</id>
+ <code>SHEEP</code>
+ <scientific_name>Ovis aries</scientific_name>
+ <common_name>Sheep</common_name>
+ <rank>species</rank>
+ <uri>http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9721</id>
+ <scientific_name>Cetacea</scientific_name>
+ <common_name>Whales</common_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9771</id>
+ <code>BALMU</code>
+ <scientific_name>Balaenoptera musculus</scientific_name>
+ <common_name>Blue whale</common_name>
+ <rank>species</rank>
+ <uri>http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9739</id>
+ <code>TURTR</code>
+ <scientific_name>Tursiops truncatus</scientific_name>
+ <common_name>Atlantic bottle-nosed dolphin</common_name>
+ <synonym>Delphinus truncatus</synonym>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9823</id>
+ <code>PIG</code>
+ <scientific_name>Sus scrofa</scientific_name>
+ <common_name>Pig</common_name>
+ <rank>species</rank>
+ <uri>http://www.batraciens-reptiles.com/sus%20scrofa2.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">30538</id>
+ <code>LAMPA</code>
+ <scientific_name>Lama guanicoe pacos</scientific_name>
+ <common_name>Alpaca</common_name>
+ <synonym>Lama pacos</synonym>
+ <rank>species</rank>
+ <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0658.jpeg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9796</id>
+ <code>HORSE</code>
+ <scientific_name>Equus caballus</scientific_name>
+ <common_name>Horse</common_name>
+ <rank>species</rank>
+ <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9397</id>
+ <scientific_name>Chiroptera</scientific_name>
+ <common_name>Bats</common_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">59463</id>
+ <code>MYOLU</code>
+ <scientific_name>Myotis lucifugus</scientific_name>
+ <common_name>Little brown bat</common_name>
+ <rank>species</rank>
+ <uri>http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">132908</id>
+ <code>PTEVA</code>
+ <scientific_name>Pteropus vampyrus</scientific_name>
+ <common_name>Large flying fox</common_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>Carnivora</name>
+ <taxonomy>
+ <id provider="uniprot">33554</id>
+ <scientific_name>Carnivora</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">379584</id>
+ <scientific_name>Caniformia</scientific_name>
+ <rank>suborder</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9646</id>
+ <code>AILME</code>
+ <scientific_name>Ailuropoda melanoleuca</scientific_name>
+ <common_name>Giant panda</common_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>CANFA</name>
+ <taxonomy>
+ <id provider="uniprot">9615</id>
+ <code>CANFA</code>
+ <scientific_name>Canis familiaris</scientific_name>
+ <common_name>Dog</common_name>
+ <synonym>Canis lupus familiaris</synonym>
+ <rank>subspecies</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>FELCA</name>
+ <taxonomy>
+ <id provider="uniprot">9685</id>
+ <code>FELCA</code>
+ <scientific_name>Felis catus</scientific_name>
+ <common_name>Cat</common_name>
+ <synonym>Felis silvestris catus</synonym>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9362</id>
+ <scientific_name>Insectivora</scientific_name>
+ <common_name>hedgehogs, shrews, moles and others</common_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9365</id>
+ <code>ERIEU</code>
+ <scientific_name>Erinaceus europaeus</scientific_name>
+ <common_name>Western European hedgehog</common_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">42254</id>
+ <code>SORAR</code>
+ <scientific_name>Sorex araneus</scientific_name>
+ <common_name>Eurasian common shrew</common_name>
+ <synonym>European shrew</synonym>
+ <rank>species</rank>
+ <uri>http://www.batraciens-reptiles.com/musaraigne2.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <scientific_name>Atlantogenata</scientific_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">311790</id>
+ <scientific_name>Afrotheria</scientific_name>
+ <rank>superorder</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <scientific_name>Paenungulata</scientific_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9785</id>
+ <code>LOXAF</code>
+ <scientific_name>Loxodonta africana</scientific_name>
+ <common_name>African savanna elephant</common_name>
+ <rank>species</rank>
+ <uri>http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9813</id>
+ <code>PROCA</code>
+ <scientific_name>Procavia capensis</scientific_name>
+ <common_name>Cape hyrax</common_name>
+ <synonym>Rock dassie</synonym>
+ <rank>species</rank>
+ <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9371</id>
+ <code>ECHTE</code>
+ <scientific_name>Echinops telfairi</scientific_name>
+ <common_name>Lesser hedgehog tenrec</common_name>
+ <rank>species</rank>
+ <uri>http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9348</id>
+ <scientific_name>Xenarthra</scientific_name>
+ <synonym>Edentata</synonym>
+ <rank>superorder</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9358</id>
+ <code>CHOHO</code>
+ <scientific_name>Choloepus hoffmanni</scientific_name>
+ <common_name>Hoffmann's two-fingered sloth</common_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9361</id>
+ <code>DASNO</code>
+ <scientific_name>Dasypus novemcinctus</scientific_name>
+ <common_name>Nine-banded armadillo</common_name>
+ <rank>species</rank>
+ <uri>http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9263</id>
+ <scientific_name>Metatheria</scientific_name>
+ <common_name>Marsupials</common_name>
+ </taxonomy>
+ <reference doi="10.1016/j.ympev.2004.05.004">
+ <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>
+ </reference>
+ <reference>
+ </reference>
+ <clade>
+ <taxonomy>
+ <scientific_name>Eometatheria</scientific_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9315</id>
+ <code>MACEU</code>
+ <scientific_name>Macropus eugenii</scientific_name>
+ <common_name>Tammar wallaby</common_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9305</id>
+ <code>SARHA</code>
+ <scientific_name>Sarcophilus harrisii</scientific_name>
+ <common_name>Tasmanian devil</common_name>
+ <synonym>Sarcophilus laniarius</synonym>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>MONDO</name>
+ <taxonomy>
+ <id provider="uniprot">13616</id>
+ <code>MONDO</code>
+ <scientific_name>Monodelphis domestica</scientific_name>
+ <common_name>Short-tailed gray opossum</common_name>
+ <rank>species</rank>
+ <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>ORNAN</name>
+ <taxonomy>
+ <id provider="uniprot">9258</id>
+ <code>ORNAN</code>
+ <scientific_name>Ornithorhynchus anatinus</scientific_name>
+ <common_name>Duckbill platypus</common_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/1/12/Platypus_BrokenRiver_QLD_Australia2.png</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>Diapsida</name>
+ <clade>
+ <name>Neognathae</name>
+ <taxonomy>
+ <id provider="uniprot">8825</id>
+ <scientific_name>Neognathae</scientific_name>
+ <rank>superorder</rank>
+ </taxonomy>
+ <clade>
+ <name>Phasianidae & Anatidae (waterfowl)</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9005</id>
+ <scientific_name>Phasianidae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>CHICK</name>
+ <taxonomy>
+ <id provider="uniprot">9031</id>
+ <code>CHICK</code>
+ <scientific_name>Gallus gallus</scientific_name>
+ <common_name>Chicken</common_name>
+ <synonym>Gallus domesticus</synonym>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">9103</id>
+ <code>MELGA</code>
+ <scientific_name>Meleagris gallopavo</scientific_name>
+ <common_name>Common turkey</common_name>
+ <rank>species</rank>
+ <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">8839</id>
+ <code>ANAPL</code>
+ <scientific_name>Anas platyrhynchos</scientific_name>
+ <common_name>Domestic duck</common_name>
+ <synonym>Anas boschas</synonym>
+ <rank>species</rank>
+ <uri>http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>TAEGU</name>
+ <taxonomy>
+ <id provider="uniprot">59729</id>
+ <code>TAEGU</code>
+ <scientific_name>Taeniopygia guttata</scientific_name>
+ <common_name>Zebra finch</common_name>
+ <synonym>Poephila guttata</synonym>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>ANOCA</name>
+ <taxonomy>
+ <id provider="eol">795869</id>
+ <code>ANOCA</code>
+ <scientific_name>Anolis carolinensis</scientific_name>
+ <authority>Voigt, 1832</authority>
+ <common_name>Green anole</common_name>
+ <synonym>American chameleon</synonym>
+ <rank>species</rank>
+ <uri>http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg</uri>
+ <uri>http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">8353</id>
+ <scientific_name>Xenopus</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>XENTR</name>
+ <taxonomy>
+ <id provider="uniprot">8364</id>
+ <code>XENTR</code>
+ <scientific_name>Xenopus tropicalis</scientific_name>
+ <common_name>Western clawed frog</common_name>
+ <synonym>Silurana tropicalis</synonym>
+ <rank>species</rank>
+ <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">8355</id>
+ <code>XENLA</code>
+ <scientific_name>Xenopus laevis</scientific_name>
+ <authority>Daudin, 1802</authority>
+ <common_name>African clawed frog</common_name>
+ <synonym>Bufo laevis</synonym>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>Teleostei</name>
+ <taxonomy>
+ <id provider="uniprot">32443</id>
+ <scientific_name>Teleostei</scientific_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">123368</id>
+ <scientific_name>Acanthomorpha</scientific_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">32485</id>
+ <scientific_name>Percomorpha</scientific_name>
+ </taxonomy>
+ <clade>
+ <name>Smegmamorpha</name>
+ <clade>
+ <name>GASAC</name>
+ <taxonomy>
+ <id provider="uniprot">69293</id>
+ <code>GASAC</code>
+ <scientific_name>Gasterosteus aculeatus</scientific_name>
+ <common_name>Three-spined stickleback</common_name>
+ <rank>species</rank>
+ <uri>http://www.fiskbasen.se/images/gasterosteus_aculeatus.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>ORYLA</name>
+ <taxonomy>
+ <id provider="uniprot">8090</id>
+ <code>ORYLA</code>
+ <scientific_name>Oryzias latipes</scientific_name>
+ <common_name>Medaka fish</common_name>
+ <synonym>Japanese ricefish</synonym>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">31031</id>
+ <scientific_name>Tetraodontidae</scientific_name>
+ <common_name>puffers</common_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>FUGRU</name>
+ <taxonomy>
+ <id provider="uniprot">31033</id>
+ <code>FUGRU</code>
+ <scientific_name>Takifugu rubripes</scientific_name>
+ <common_name>Japanese pufferfish</common_name>
+ <synonym>Fugu rubripes</synonym>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>TETNG</name>
+ <taxonomy>
+ <id provider="uniprot">99883</id>
+ <code>TETNG</code>
+ <scientific_name>Tetraodon nigroviridis</scientific_name>
+ <common_name>Green puffer</common_name>
+ <synonym>Chelonodon nigroviridis</synonym>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">8128</id>
+ <code>ORENI</code>
+ <scientific_name>Tilapia nilotica</scientific_name>
+ <authority>Linnaeus, 1758</authority>
+ <common_name>Nile tilapia</common_name>
+ <synonym>Tilapia nilotica</synonym>
+ <rank>species</rank>
+ <uri>http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">8049</id>
+ <code>GADMO</code>
+ <scientific_name>Gadus morhua</scientific_name>
+ <common_name>Atlantic cod</common_name>
+ <rank>species</rank>
+ <uri>http://www.marinbi.com/g-morhua.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>DANRE</name>
+ <taxonomy>
+ <id provider="uniprot">7955</id>
+ <code>DANRE</code>
+ <scientific_name>Danio rerio</scientific_name>
+ <common_name>Zebrafish</common_name>
+ <synonym>Brachydanio rerio</synonym>
+ <rank>species</rank>
+ <uri>http://fishbase.org.cn/images/species/Darer_m0.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">7868</id>
+ <code>CALMI</code>
+ <scientific_name>Callorhynchus milii</scientific_name>
+ <common_name>Australian ghost shark</common_name>
+ <synonym>Australian ghost shark</synonym>
+ <rank>species</rank>
+ <uri>http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">7757</id>
+ <code>PETMA</code>
+ <scientific_name>Petromyzon marinus</scientific_name>
+ <common_name>Sea lamprey</common_name>
+ <rank>species</rank>
+ <uri>http://www.uk-fish.info/pics/sealampray01.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>Urochordata</name>
+ <taxonomy>
+ <id provider="uniprot">7712</id>
+ <scientific_name>Urochordata</scientific_name>
+ <rank>subphylum</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">7718</id>
+ <scientific_name>Ciona</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>CIOIN</name>
+ <taxonomy>
+ <id provider="uniprot">7719</id>
+ <code>CIOIN</code>
+ <scientific_name>Ciona intestinalis</scientific_name>
+ <common_name>Transparent sea squirt</common_name>
+ <synonym>Ascidia intestinalis</synonym>
+ <rank>species</rank>
+ <uri>http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>CIOSA</name>
+ <taxonomy>
+ <id provider="uniprot">51511</id>
+ <code>CIOSA</code>
+ <scientific_name>Ciona savignyi</scientific_name>
+ <common_name>Pacific transparent sea squirt</common_name>
+ <rank>species</rank>
+ <uri>http://www.pnwscuba.com/invasives/photos/ciona4.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>OIKDI</name>
+ <taxonomy>
+ <id provider="ncbi">34765</id>
+ <code>OIKDI</code>
+ <scientific_name>Oikopleura dioica</scientific_name>
+ <common_name>Tunicate</common_name>
+ <rank>species</rank>
+ <uri>http://jellieszone.com/images/oikopleura.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>BRAFL</name>
+ <taxonomy>
+ <id provider="uniprot">7739</id>
+ <code>BRAFL</code>
+ <scientific_name>Branchiostoma floridae</scientific_name>
+ <common_name>Florida lancelet</common_name>
+ <synonym>Amphioxus</synonym>
+ <rank>species</rank>
+ <uri>http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>Hemichordata & Echinodermata</name>
+ <clade>
+ <name>SACKO</name>
+ <taxonomy>
+ <id provider="uniprot">10224</id>
+ <code>SACKO</code>
+ <scientific_name>Saccoglossus kowalevskii</scientific_name>
+ <authority>Agassiz, 1873</authority>
+ <common_name>Acorn worm</common_name>
+ <rank>species</rank>
+ <uri>http://faculty.washington.edu/bjswalla/Hemichordata/Enteropneusta/SkowAK.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>STRPU</name>
+ <taxonomy>
+ <id provider="uniprot">7668</id>
+ <code>STRPU</code>
+ <scientific_name>Strongylocentrotus purpuratus</scientific_name>
+ <common_name>Purple sea urchin</common_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>Protostomia</name>
+ <clade>
+ <name>Ecdysozoa</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">6656</id>
+ <scientific_name>Arthropoda</scientific_name>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">197563</id>
+ <scientific_name>Mandibulata</scientific_name>
+ </taxonomy>
+ <clade>
+ <name>Pancrustacea</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">33340</id>
+ <scientific_name>Neoptera</scientific_name>
+ <rank>subclass</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">33392</id>
+ <scientific_name>Endopterygota</scientific_name>
+ <rank>infraclass</rank>
+ </taxonomy>
+ <clade>
+ <name>Hymenoptera & Lepidoptera & Diptera</name>
+ <clade>
+ <name>Lepidoptera & Diptera</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">7147</id>
+ <scientific_name>Diptera</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">7157</id>
+ <scientific_name>Culicidae</scientific_name>
+ <common_name>mosquitos</common_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>AEDAE</name>
+ <taxonomy>
+ <id provider="uniprot">7159</id>
+ <code>AEDAE</code>
+ <scientific_name>Aedes aegypti</scientific_name>
+ <common_name>Yellowfever mosquito</common_name>
+ <synonym>Culex aegypti</synonym>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>ANOGA</name>
+ <taxonomy>
+ <id provider="uniprot">7165</id>
+ <code>ANOGA</code>
+ <scientific_name>Anopheles gambiae</scientific_name>
+ <common_name>African malaria mosquito</common_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>CULPI</name>
+ <taxonomy>
+ <id provider="uniprot">7175</id>
+ <code>CULPI</code>
+ <scientific_name>Culex pipiens</scientific_name>
+ <common_name>House mosquito</common_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Culex_pipiens_2007-1.jpg/628px-Culex_pipiens_2007-1.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">32341</id>
+ <scientific_name>Sophophora</scientific_name>
+ <rank>subgenus</rank>
+ </taxonomy>
+ <clade>
+ <name>DROME</name>
+ <taxonomy>
+ <id provider="uniprot">7227</id>
+ <code>DROME</code>
+ <scientific_name>Drosophila melanogaster</scientific_name>
+ <common_name>Fruit fly</common_name>
+ <rank>species</rank>
+ <uri>http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>DROPS</name>
+ <taxonomy>
+ <id provider="uniprot">46245</id>
+ <code>DROPS</code>
+ <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>
+ <common_name>Fruit fly</common_name>
+ <rank>subspecies</rank>
+ <uri>http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>BOMMO</name>
+ <taxonomy>
+ <id provider="uniprot">7091</id>
+ <code>BOMMO</code>
+ <scientific_name>Bombyx mori</scientific_name>
+ <common_name>Silk moth</common_name>
+ <rank>species</rank>
+ <uri>http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">7400</id>
+ <scientific_name>Apocrita</scientific_name>
+ <common_name>wasps, ants and bees</common_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">7434</id>
+ <scientific_name>Aculeata</scientific_name>
+ <rank>suborder</rank>
+ </taxonomy>
+ <clade>
+ <name>APIME</name>
+ <taxonomy>
+ <id provider="uniprot">7460</id>
+ <code>APIME</code>
+ <scientific_name>Apis mellifera</scientific_name>
+ <common_name>Honeybee</common_name>
+ <rank>species</rank>
+ <uri>http://www.floridanature.org/photos/Apis_mellifera_6b_&_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">12957</id>
+ <code>ATTCE</code>
+ <scientific_name>Atta cephalotes</scientific_name>
+ <authority>Linnaeus, 1758</authority>
+ <common_name>Leafcutter ant</common_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>NASVI</name>
+ <taxonomy>
+ <id provider="uniprot">7425</id>
+ <code>NASVI</code>
+ <scientific_name>Nasonia vitripennis</scientific_name>
+ <common_name>Parasitic wasp</common_name>
+ <rank>species</rank>
+ <uri>http://www.freshpond.org/nasonia.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>TRICA</name>
+ <taxonomy>
+ <id provider="uniprot">7070</id>
+ <code>TRICA</code>
+ <scientific_name>Tribolium castaneum</scientific_name>
+ <common_name>Red flour beetle</common_name>
+ <rank>species</rank>
+ <uri>http://www.ars.usda.gov/sp2UserFiles/Place/54300530/proj/tribolium/rfb.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">7524</id>
+ <scientific_name>Hemiptera</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <name>ACYPI</name>
+ <taxonomy>
+ <id provider="uniprot">7029</id>
+ <code>ACYPI</code>
+ <scientific_name>Acyrthosiphon pisum</scientific_name>
+ <common_name>Pea aphid</common_name>
+ <rank>species</rank>
+ <uri>http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>RHOPR</name>
+ <taxonomy>
+ <id provider="uniprot">13249</id>
+ <code>RHOPR</code>
+ <scientific_name>Rhodnius prolixus</scientific_name>
+ <common_name>Triatomid bug</common_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">6658</id>
+ <scientific_name>Branchiopoda</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">6661</id>
+ <code>ARTSF</code>
+ <scientific_name>Artemia franciscana</scientific_name>
+ <common_name>Brine shrimp</common_name>
+ <synonym>Artemia sanfranciscana</synonym>
+ <rank>species</rank>
+ <uri>http://www.alireza-asem.ir/images/Artemia.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>DAPPU</name>
+ <taxonomy>
+ <id provider="uniprot">6669</id>
+ <code>DAPPU</code>
+ <scientific_name>Daphnia pulex</scientific_name>
+ <common_name>Water flea</common_name>
+ <rank>species</rank>
+ <uri>http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">61985</id>
+ <scientific_name>Myriapoda</scientific_name>
+ <rank>subphylum</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">7553</id>
+ <scientific_name>Diplopoda</scientific_name>
+ <common_name>millipedes</common_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">118561</id>
+ <scientific_name>Helminthomorpha</scientific_name>
+ <rank>subclass</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">364406</id>
+ <scientific_name>Antrokoreana gracilipes</scientific_name>
+ <rank>species</rank>
+ <uri>http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">174156</id>
+ <code>NARAN</code>
+ <scientific_name>Narceus annularis</scientific_name>
+ <common_name>Millipede</common_name>
+ <rank>species</rank>
+ <uri>http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">52428</id>
+ <scientific_name>Polyxenus lagurus</scientific_name>
+ <common_name>bristly millipede</common_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">7540</id>
+ <scientific_name>Chilopoda</scientific_name>
+ <common_name>centipedes</common_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">29022</id>
+ <code>SCUCO</code>
+ <scientific_name>Scutigera coleoptrata</scientific_name>
+ <common_name>House centipede</common_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">126957</id>
+ <scientific_name>Strigamia maritima</scientific_name>
+ <rank>species</rank>
+ <uri>http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>IXOSC</name>
+ <taxonomy>
+ <id provider="uniprot">6945</id>
+ <code>IXOSC</code>
+ <scientific_name>Ixodes scapularis</scientific_name>
+ <common_name>Black-legged tick</common_name>
+ <synonym>Deer tick</synonym>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">119089</id>
+ <scientific_name>Chromadorea</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <reference doi="10.1038/32160">
+ </reference>
+ <clade>
+ <name>nematode Clade V</name>
+ <clade>
+ <name>Caenorhabditis</name>
+ <taxonomy>
+ <id provider="uniprot">6237</id>
+ <scientific_name>Caenorhabditis</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>CAEBR</name>
+ <taxonomy>
+ <id provider="uniprot">6238</id>
+ <code>CAEBR</code>
+ <scientific_name>Caenorhabditis briggsae</scientific_name>
+ <rank>species</rank>
+ <uri>http://www.life.umd.edu/biology/haag/briggsae_herm.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>CAEEL</name>
+ <taxonomy>
+ <id provider="uniprot">6239</id>
+ <code>CAEEL</code>
+ <scientific_name>Caenorhabditis elegans</scientific_name>
+ <rank>species</rank>
+ <uri>http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>PRIPA</name>
+ <taxonomy>
+ <id provider="uniprot">54126</id>
+ <code>PRIPA</code>
+ <scientific_name>Pristionchus pacificus</scientific_name>
+ <rank>species</rank>
+ <uri>http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>BRUMA</name>
+ <taxonomy>
+ <id provider="uniprot">6279</id>
+ <code>BRUMA</code>
+ <scientific_name>Brugia malayi</scientific_name>
+ <common_name>Filarial nematode worm</common_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>Lophotrochozoa</name>
+ <clade>
+ <name>Annelida & Mollusca</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">6340</id>
+ <scientific_name>Annelida</scientific_name>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <name>CAP</name>
+ <taxonomy>
+ <id provider="uniprot">283909</id>
+ <scientific_name>Capitella teleta</scientific_name>
+ <authority>Blake, Grassle & Eckelbarger, 2009</authority>
+ <synonym>Capitella sp. I</synonym>
+ <rank>species</rank>
+ <uri>http://genome.jgi-psf.org/Capca1/capitella.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">6412</id>
+ <code>HELRO</code>
+ <scientific_name>Helobdella robusta</scientific_name>
+ <common_name>Californian leech</common_name>
+ <rank>species</rank>
+ <uri>http://genome.jgi-psf.org/Helro1/Helro_leech.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">6447</id>
+ <scientific_name>Mollusca</scientific_name>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">6448</id>
+ <scientific_name>Gastropoda</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">225164</id>
+ <code>LOTGI</code>
+ <scientific_name>Lottia gigantea</scientific_name>
+ <common_name>Owl limpet</common_name>
+ <rank>species</rank>
+ <uri>http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">6500</id>
+ <code>APLCA</code>
+ <scientific_name>Aplysia californica</scientific_name>
+ <common_name>California sea hare</common_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">29159</id>
+ <code>CRAGI</code>
+ <scientific_name>Crassostrea gigas</scientific_name>
+ <authority>Thunberg, 1793</authority>
+ <common_name>Pacific oyster</common_name>
+ <synonym>Crassotrea gigas</synonym>
+ <synonym>Crassostrea angulata</synonym>
+ <synonym>Ostrea gigas</synonym>
+ <rank>species</rank>
+ <uri>http://www.marlin.ac.uk/imgs/o_cragig.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">6157</id>
+ <scientific_name>Platyhelminthes</scientific_name>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <name>SCHMA</name>
+ <taxonomy>
+ <id provider="uniprot">6183</id>
+ <code>SCHMA</code>
+ <scientific_name>Schistosoma mansoni</scientific_name>
+ <common_name>Blood fluke</common_name>
+ <rank>species</rank>
+ <uri>http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>SCHMD</name>
+ <taxonomy>
+ <id provider="uniprot">79327</id>
+ <code>SCHMD</code>
+ <scientific_name>Schmidtea mediterranea</scientific_name>
+ <common_name>Freshwater planarian flatworm</common_name>
+ <rank>species</rank>
+ <uri>http://www.astrobio.net/images/galleryimages_images/Gallery_Image_8136.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>Cnidaria</name>
+ <taxonomy>
+ <id provider="uniprot">6073</id>
+ <scientific_name>Cnidaria</scientific_name>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">6102</id>
+ <scientific_name>Hexacorallia</scientific_name>
+ <synonym>Ceriantipatharia</synonym>
+ <synonym>Zoantharia</synonym>
+ <rank>subclass</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">45351</id>
+ <code>NEMVE</code>
+ <scientific_name>Nematostella vectensis</scientific_name>
+ <common_name>Starlet sea anemone</common_name>
+ <rank>species</rank>
+ <uri>http://genome.jgi-psf.org/Nemve1/Nematostellapolyp.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">70779</id>
+ <code>ACRDI</code>
+ <scientific_name>Acropora digitifera</scientific_name>
+ <common_name>Staghorn coral</common_name>
+ <rank>species</rank>
+ <uri>http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>HYDMA</name>
+ <taxonomy>
+ <id provider="uniprot">6085</id>
+ <code>HYDMA</code>
+ <scientific_name>Hydra magnipapillata</scientific_name>
+ <authority>Ito, 1947</authority>
+ <rank>species</rank>
+ <uri>http://www.ncbi.nlm.nih.gov/UniGene/IMG/6085.gif</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>TRIAD</name>
+ <taxonomy>
+ <id provider="uniprot">10228</id>
+ <code>TRIAD</code>
+ <scientific_name>Trichoplax adhaerens</scientific_name>
+ <synonym>Trichoplax reptans</synonym>
+ <rank>species</rank>
+ <uri>http://ncse.com/files/images/trichoplax_ana_signorovitch.jpg</uri>
+ </taxonomy>
+ <reference doi="10.1073/pnas.0602076103">
+ </reference>
+ </clade>
+ </clade>
+ <clade>
+ <name>AMPQU</name>
+ <taxonomy>
+ <id provider="uniprot">400682</id>
+ <code>AMPQE</code>
+ <scientific_name>Amphimedon queenslandica</scientific_name>
+ <authority>Hooper & Van Soest, 2006</authority>
+ <common_name>Sponge</common_name>
+ <synonym>Reniera sp. JGI-2005</synonym>
+ <rank>species</rank>
+ <uri>http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">81524</id>
+ <scientific_name>Codonosigidae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>MONBE</name>
+ <taxonomy>
+ <id provider="uniprot">81824</id>
+ <code>MONBE</code>
+ <scientific_name>Monosiga brevicollis</scientific_name>
+ <common_name>Choanoflagellate</common_name>
+ <rank>species</rank>
+ <uri>http://genome.jgi-psf.org/Monbr1/Monosiga_1.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">946362</id>
+ <code>SALS5</code>
+ <scientific_name>Salpingoeca rosetta</scientific_name>
+ <synonym>Proterospongia sp. ATCC 50818</synonym>
+ <synonym>Salpingoeca sp. ATCC 50818</synonym>
+ <rank>species</rank>
+ <uri>http://cfb.unh.edu/phycokey/Choices/Amoebae_Flagellates_Ciliates/Choanoflagellates/SALPINGOECA/salpingoeca_02_300x240_Kalle%20Olli_botany.ut.ee.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>Ichthyophonida & Filasterea</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">198625</id>
+ <scientific_name>Ichthyophonida</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">4881</id>
+ <code>AMOPA</code>
+ <scientific_name>Amoebidium parasiticum</scientific_name>
+ <rank>species</rank>
+ <uri>http://www.nhm.ku.edu/~fungi/Ilustgenera/amoebi.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>SPHARC</name>
+ <taxonomy>
+ <id provider="uniprot">72019</id>
+ <scientific_name>Sphaeroforma arctica</scientific_name>
+ <rank>species</rank>
+ <uri>http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <scientific_name>Filasterea</scientific_name>
+ </taxonomy>
+ <reference doi="10.1371/journal.pone.0002098">
+ </reference>
+ <reference>
+ </reference>
+ <clade>
+ <name>CAPOWC</name>
+ <taxonomy>
+ <id provider="uniprot">192875</id>
+ <scientific_name>Capsaspora owczarzaki</scientific_name>
+ <rank>species</rank>
+ <uri>http://www.berfrois.com/wp-content/uploads/2011/03/Capsaspora_owczarzaki.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>MINVIB</name>
+ <taxonomy>
+ <id provider="uniprot">134558</id>
+ <scientific_name>Ministeria vibrans</scientific_name>
+ <rank>species</rank>
+ <uri>http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <scientific_name>Holomycota</scientific_name>
+ <synonym>Nucletmycea</synonym>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">4751</id>
+ <scientific_name>Fungi</scientific_name>
+ <rank>kingdom</rank>
+ </taxonomy>
+ <clade>
+ <name>Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota & Chytridiomycota & Neocallimastigomycota</name>
+ <clade>
+ <name>Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota & Chytridiomycota</name>
+ <clade>
+ <name>Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota</name>
+ <clade>
+ <name>Dikarya & Mucoromycotina & Kickxellomycotina</name>
+ <clade>
+ <name>Dikarya & Mucoromycotina</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">451864</id>
+ <scientific_name>Dikarya</scientific_name>
+ <rank>subkingdom</rank>
+ </taxonomy>
+ <reference doi="10.1038/nature05110">
+ </reference>
+ <reference>
+ </reference>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">4890</id>
+ <scientific_name>Ascomycota</scientific_name>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <name>Pezizomycotina & Saccharomycetales</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">147538</id>
+ <scientific_name>Pezizomycotina</scientific_name>
+ <synonym>Euascomycota</synonym>
+ <rank>subphylum</rank>
+ </taxonomy>
+ <reference doi="0.3852/mycologia.98.6.1018">
+ <desc>A five-gene phylogeny of Pezizomycotina</desc>
+ </reference>
+ <reference>
+ </reference>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">716546</id>
+ <scientific_name>Leotiomyceta</scientific_name>
+ </taxonomy>
+ <clade>
+ <name>Sordariomyceta & Dothideomycetes & Trichocomaceae & Lecanoromycetes</name>
+ <clade>
+ <name>Sordariomyceta & Dothideomycetes & Lecanoromycetes</name>
+ <clade>
+ <name>Sordariomyceta & Lecanoromycetes</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">715989</id>
+ <scientific_name>Sordariomyceta</scientific_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">147550</id>
+ <scientific_name>Sordariomycetes</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <name>Magnaporthales & Hypocreales</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">5125</id>
+ <scientific_name>Hypocreales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <name>ACRALC</name>
+ <taxonomy>
+ <id provider="uniprot">398408</id>
+ <scientific_name>Acremonium alcalophilum</scientific_name>
+ <rank>species</rank>
+ <uri>http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>GIBZE</name>
+ <taxonomy>
+ <id provider="uniprot">5518</id>
+ <code>GIBZE</code>
+ <scientific_name>Gibberella zeae</scientific_name>
+ <common_name>Wheat head blight fungus</common_name>
+ <synonym>Fusarium graminearum</synonym>
+ <rank>species</rank>
+ <uri>http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">29875</id>
+ <code>HYPVI</code>
+ <scientific_name>Hypocrea virens</scientific_name>
+ <common_name>Gliocladium virens</common_name>
+ <synonym>Trichoderma virens</synonym>
+ <synonym>Gliocladium flavofuscum</synonym>
+ <rank>species</rank>
+ <uri>http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>MAGGR</name>
+ <taxonomy>
+ <id provider="uniprot">148305</id>
+ <code>MAGGR</code>
+ <scientific_name>Magnaporthe grisea</scientific_name>
+ <common_name>Rice blast fungus</common_name>
+ <synonym>Pyricularia grisea</synonym>
+ <rank>species</rank>
+ <uri>http://www.forestryimages.org/images/768x512/5369002.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">5139</id>
+ <scientific_name>Sordariales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">35718</id>
+ <scientific_name>Chaetomiaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">35719</id>
+ <scientific_name>Thielavia</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>MYCTHE</name>
+ <taxonomy>
+ <id provider="uniprot">573728</id>
+ <scientific_name>Myceliophthora thermophila</scientific_name>
+ <authority>(Apinis) Oorschot 1977</authority>
+ <synonym>Sporotrichum thermophilum</synonym>
+ <synonym>anamorph of Thielavia heterothallica</synonym>
+ <rank>species</rank>
+ <uri>http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>THITER</name>
+ <taxonomy>
+ <id provider="eol">193532</id>
+ <scientific_name>Thielavia terrestris</scientific_name>
+ <authority>Malloch & Cain 1972</authority>
+ <synonym>Acremonium alabamense</synonym>
+ <rank>species</rank>
+ <uri>http://genome.jgi-psf.org/public/Thite2/Thite1.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>CHAGB</name>
+ <taxonomy>
+ <id provider="eol">1029505</id>
+ <code>CHAGB</code>
+ <scientific_name>Chaetomium globosum</scientific_name>
+ <authority>Kunze 1817</authority>
+ <common_name>Soil fungus</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>NEUCR</name>
+ <taxonomy>
+ <id provider="uniprot">5141</id>
+ <code>NEUCR</code>
+ <scientific_name>Neurospora crassa</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">147548</id>
+ <scientific_name>Leotiomycetes</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">28983</id>
+ <scientific_name>Sclerotiniaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">40559</id>
+ <code>BOTFU</code>
+ <scientific_name>Botryotinia fuckeliana</scientific_name>
+ <common_name>Noble rot fungus</common_name>
+ <synonym>Botrytis cinerea</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">5180</id>
+ <code>SCLSC</code>
+ <scientific_name>Sclerotinia sclerotiorum</scientific_name>
+ <common_name>White mold</common_name>
+ <synonym>Whetzelinia sclerotiorum</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>OIDMAI</name>
+ <taxonomy>
+ <id provider="uniprot">78148</id>
+ <scientific_name>Oidiodendron maius</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">388435</id>
+ <scientific_name>Lecanoromycetidae</scientific_name>
+ <rank>subclass</rank>
+ </taxonomy>
+ <clade>
+ <name>CLAGRA</name>
+ <taxonomy>
+ <id provider="uniprot">27339</id>
+ <scientific_name>Cladonia grayi</scientific_name>
+ <synonym>Cladonia grayi Merr</synonym>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>XANPAR</name>
+ <taxonomy>
+ <id provider="uniprot">107463</id>
+ <scientific_name>Xanthoria parietina</scientific_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">147541</id>
+ <scientific_name>Dothideomycetes</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <reference doi="10.3114/sim.2009.64.01">
+ <desc>A class-wide phylogenetic assessment of Dothideomycetes</desc>
+ </reference>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">134362</id>
+ <scientific_name>Capnodiales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">41254</id>
+ <scientific_name>Mycosphaerella</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>MYCFI</name>
+ <taxonomy>
+ <id provider="uniprot">83344</id>
+ <scientific_name>Mycosphaerella fijiensis</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>MYCGR</name>
+ <taxonomy>
+ <id provider="uniprot">54734</id>
+ <code>MYCGR</code>
+ <scientific_name>Mycosphaerella graminicola</scientific_name>
+ <common_name>Speckled leaf blotch fungus</common_name>
+ <synonym>Septoria tritici</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>MYCPJ</name>
+ <taxonomy>
+ <id provider="uniprot">64363</id>
+ <code>MYCPJ</code>
+ <scientific_name>Mycosphaerella pini</scientific_name>
+ <common_name>Red band needle blight disease fungus</common_name>
+ <synonym>Dothistroma septosporum</synonym>
+ <synonym>Dothistroma pini</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>MYCPOP</name>
+ <taxonomy>
+ <id provider="uniprot">85929</id>
+ <scientific_name>Mycosphaerella populorum</scientific_name>
+ <synonym>Septoria musiva</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>BAUCOM</name>
+ <taxonomy>
+ <id provider="uniprot">430998</id>
+ <scientific_name>Baudoinia compniacensis</scientific_name>
+ <rank>species</rank>
+ <uri>http://www.diark.org/img/species_pict/Baudoinia_compniacensis</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">715340</id>
+ <scientific_name>Pleosporineae</scientific_name>
+ <rank>suborder</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">28556</id>
+ <scientific_name>Pleosporaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>Cochliobolus & Setosphaeria</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">5015</id>
+ <scientific_name>Cochliobolus</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>COCHE</name>
+ <taxonomy>
+ <id provider="uniprot">5016</id>
+ <code>COCHE</code>
+ <scientific_name>Cochliobolus heterostrophus</scientific_name>
+ <synonym>Drechslera maydis</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">45130</id>
+ <code>COCSA</code>
+ <scientific_name>Cochliobolus sativus</scientific_name>
+ <synonym>Bipolaris sorokiniana</synonym>
+ <rank>species</rank>
+ <uri>http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">93612</id>
+ <code>SETTU</code>
+ <scientific_name>Setosphaeria turcica</scientific_name>
+ <authority>(Luttr.) K.J. Leonard & Suggs, (1974)</authority>
+ <common_name>Northern corn leaf blight disease fungus</common_name>
+ <synonym>Exserohilum turcicum</synonym>
+ <synonym>Helminthosporium turcicum</synonym>
+ <rank>species</rank>
+ <uri>http://openi.nlm.nih.gov/imgs/rescaled512/3017769_1471-2229-10-103-3.png</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>PYRTR</name>
+ <taxonomy>
+ <id provider="uniprot">426418</id>
+ <code>PYRTR</code>
+ <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>
+ <common_name>Wheat tan spot fungus</common_name>
+ <synonym>Drechslera tritici-repentis</synonym>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>PHANO</name>
+ <taxonomy>
+ <id provider="uniprot">13684</id>
+ <code>PHANO</code>
+ <scientific_name>Phaeosphaeria nodorum</scientific_name>
+ <common_name>Glume blotch fungus</common_name>
+ <synonym>Septoria nodorum</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">28568</id>
+ <scientific_name>Trichocomaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>Neosartorya_Emericella</name>
+ <clade>
+ <name>EMENI</name>
+ <taxonomy>
+ <id provider="eol">195546</id>
+ <code>EMENI</code>
+ <scientific_name>Emericella nidulans</scientific_name>
+ <authority>Vuill. 1927</authority>
+ <synonym>Aspergillus nidulans</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>NEOFI</name>
+ <taxonomy>
+ <id provider="uniprot">331117</id>
+ <code>NEOFI</code>
+ <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>
+ <synonym>Aspergillus fischerianus</synonym>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">5052</id>
+ <scientific_name>Aspergillus</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <scientific_name>Aspergillus flavus</scientific_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">5059</id>
+ <code>ASPFL</code>
+ <scientific_name>Aspergillus flavus</scientific_name>
+ <authority>Link 1809</authority>
+ <synonym>Petromyces flavus</synonym>
+ <rank>species</rank>
+ <uri>http://www.schoolproject2.ewebsite.com/img/original/21/aspergillus-flavus.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">332952</id>
+ <code>ASPFN</code>
+ <scientific_name>Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)</scientific_name>
+ <synonym>Aspergillus flavus NRRL3357</synonym>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>ASPNG</name>
+ <taxonomy>
+ <id provider="uniprot">5061</id>
+ <code>ASPNG</code>
+ <scientific_name>Aspergillus niger</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">33183</id>
+ <scientific_name>Onygenales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <name>COCIM</name>
+ <taxonomy>
+ <id provider="uniprot">5501</id>
+ <code>COCIM</code>
+ <scientific_name>Coccidioides immitis</scientific_name>
+ <common_name>Valley fever fungus</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>UNCRE</name>
+ <taxonomy>
+ <id provider="uniprot">336963</id>
+ <code>UNCRE</code>
+ <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">656061</id>
+ <code>TUBMM</code>
+ <scientific_name>Tuber melanosporum (strain Mel28)</scientific_name>
+ <common_name>Perigord black truffle</common_name>
+ <synonym>Tuber melanosporum Mel28</synonym>
+ <uri>http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">4892</id>
+ <scientific_name>Saccharomycetales</scientific_name>
+ <common_name>budding yeasts</common_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <name>Candida & Debaryomyces & Saccharomycetacea</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">4893</id>
+ <scientific_name>Saccharomycetaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>Saccharomyces_Pichia</name>
+ <clade>
+ <name>Saccharomyces</name>
+ <clade>
+ <name>SACCA</name>
+ <taxonomy>
+ <id provider="uniprot">27288</id>
+ <code>SACCA</code>
+ <scientific_name>Saccharomyces castellii</scientific_name>
+ <common_name>Yeast</common_name>
+ <synonym>Saccharomyces castellii</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>YEAST</name>
+ <taxonomy>
+ <id provider="uniprot">4932</id>
+ <code>YEAST</code>
+ <scientific_name>Saccharomyces cerevisiae</scientific_name>
+ <common_name>Baker's yeast</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>PICAN</name>
+ <taxonomy>
+ <id provider="uniprot">4905</id>
+ <code>PICAN</code>
+ <scientific_name>Pichia angusta</scientific_name>
+ <common_name>Yeast</common_name>
+ <synonym>Hansenula polymorpha</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>Kluyveromyces & Ashbya</name>
+ <clade>
+ <name>Kluyveromyces</name>
+ <clade>
+ <name>KLULA</name>
+ <taxonomy>
+ <id provider="uniprot">28985</id>
+ <code>KLULA</code>
+ <scientific_name>Kluyveromyces lactis</scientific_name>
+ <common_name>Yeast</common_name>
+ <synonym>Candida sphaerica</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>KLUWA</name>
+ <taxonomy>
+ <id provider="uniprot">4914</id>
+ <code>KLUWA</code>
+ <scientific_name>Kluyveromyces waltii</scientific_name>
+ <common_name>Yeast</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>ASHGO</name>
+ <taxonomy>
+ <id provider="uniprot">33169</id>
+ <code>ASHGO</code>
+ <scientific_name>Ashbya gossypii</scientific_name>
+ <common_name>Yeast</common_name>
+ <synonym>Eremothecium gossypii</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>Candida & Debaryomyces</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">5475</id>
+ <scientific_name>Candida</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>CANAL</name>
+ <taxonomy>
+ <id provider="uniprot">5476</id>
+ <code>CANAL</code>
+ <scientific_name>Candida albicans</scientific_name>
+ <common_name>Yeast</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>CANTR</name>
+ <taxonomy>
+ <id provider="uniprot">5482</id>
+ <code>CANTR</code>
+ <scientific_name>Candida tropicalis</scientific_name>
+ <common_name>Yeast</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>DEBHA</name>
+ <taxonomy>
+ <id provider="uniprot">4959</id>
+ <code>DEBHA</code>
+ <scientific_name>Debaryomyces hansenii</scientific_name>
+ <common_name>Yeast</common_name>
+ <synonym>Torulaspora hansenii</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>YARLI</name>
+ <taxonomy>
+ <id provider="uniprot">4952</id>
+ <code>YARLI</code>
+ <scientific_name>Yarrowia lipolytica</scientific_name>
+ <synonym>Candida lipolytica</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">451866</id>
+ <scientific_name>Taphrinomycotina</scientific_name>
+ <rank>subphylum</rank>
+ </taxonomy>
+ <clade>
+ <name>Pneumocystidomycetes & Schizosaccharomycetes</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">4895</id>
+ <scientific_name>Schizosaccharomyces</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>SCHJP</name>
+ <taxonomy>
+ <id provider="uniprot">4897</id>
+ <code>SCHJP</code>
+ <scientific_name>Schizosaccharomyces japonicus</scientific_name>
+ <common_name>Fission yeast</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">4899</id>
+ <code>SCHOT</code>
+ <scientific_name>Schizosaccharomyces octosporus</scientific_name>
+ <common_name>Fission yeast</common_name>
+ <rank>species</rank>
+ <uri>http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>SCHPO</name>
+ <taxonomy>
+ <id provider="uniprot">4896</id>
+ <code>SCHPO</code>
+ <scientific_name>Schizosaccharomyces pombe</scientific_name>
+ <common_name>Fission yeast</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>PNECA</name>
+ <taxonomy>
+ <id provider="uniprot">4754</id>
+ <code>PNECA</code>
+ <scientific_name>Pneumocystis carinii</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>SAICOM</name>
+ <taxonomy>
+ <id provider="uniprot">5606</id>
+ <scientific_name>Saitoella complicata</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">5204</id>
+ <scientific_name>Basidiomycota</scientific_name>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <name>Agaricomycotina & Ustilaginomycotina & Pucciniomycotina</name>
+ <clade>
+ <name>Agaricomycotina & Ustilaginomycotina</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">5302</id>
+ <scientific_name>Agaricomycotina</scientific_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">155619</id>
+ <scientific_name>Homobasidiomycetes</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <reference doi="10.1098/rspb.2002.2123">
+ <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>
+ </reference>
+ <clade>
+ <name>Agaricomycetidae & Gloeophyllum & Aphyllophorales</name>
+ <clade>
+ <name>Agaricomycetidae & Gloeophyllum</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">452333</id>
+ <scientific_name>Agaricomycetidae</scientific_name>
+ <rank>subclass</rank>
+ </taxonomy>
+ <clade>
+ <name>Agaricales & Boletales</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">5338</id>
+ <scientific_name>Agaricales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <name>Agaricus & Coprinopsis & Laccaria & Pleurotus</name>
+ <clade>
+ <name>Agaricus & Coprinopsis & Laccaria</name>
+ <clade>
+ <name>Agaricus & Coprinopsis</name>
+ <clade>
+ <name>AGABB</name>
+ <taxonomy>
+ <id provider="uniprot">192524</id>
+ <scientific_name>Agaricus bisporus var. burnettii</scientific_name>
+ <uri>http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>COPCI</name>
+ <taxonomy>
+ <id provider="uniprot">5346</id>
+ <code>COPCI</code>
+ <scientific_name>Coprinopsis cinerea</scientific_name>
+ <common_name>Inky cap fungus</common_name>
+ <synonym>Hormographiella aspergillata</synonym>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">29883</id>
+ <code>LACBI</code>
+ <scientific_name>Laccaria bicolor</scientific_name>
+ <common_name>Bicoloured deceiver</common_name>
+ <synonym>Laccaria laccata var. bicolor</synonym>
+ <rank>species</rank>
+ <uri>http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>GYMLUX</name>
+ <taxonomy>
+ <id provider="uniprot">206324</id>
+ <scientific_name>Gymnopus luxurians</scientific_name>
+ <rank>species</rank>
+ <uri>http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>PLEOS</name>
+ <taxonomy>
+ <id provider="uniprot">5322</id>
+ <code>PLEOS</code>
+ <scientific_name>Pleurotus ostreatus</scientific_name>
+ <common_name>Oyster mushroom</common_name>
+ <synonym>White-rot fungus</synonym>
+ <rank>species</rank>
+ <uri>http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">68889</id>
+ <scientific_name>Boletales</scientific_name>
+ <synonym>Melanogastrales</synonym>
+ <synonym>Sclerodermatales</synonym>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">227334</id>
+ <scientific_name>Coniophorineae</scientific_name>
+ <rank>suborder</rank>
+ </taxonomy>
+ <clade>
+ <name>CONPUT</name>
+ <taxonomy>
+ <id provider="uniprot">80637</id>
+ <scientific_name>Coniophora puteana</scientific_name>
+ <authority>Schum. ex Fries</authority>
+ <common_name>cellar fungus</common_name>
+ <rank>species</rank>
+ <uri>http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>SERLAC</name>
+ <taxonomy>
+ <id provider="uniprot">85982</id>
+ <scientific_name>Serpula lacrymans</scientific_name>
+ <common_name>dry rot fungus</common_name>
+ <rank>species</rank>
+ <uri>http://www.anbg.gov.au/fungi/images/0160.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>HYDPIN</name>
+ <taxonomy>
+ <id provider="uniprot">388859</id>
+ <scientific_name>Hydnomerulius pinastri</scientific_name>
+ <common_name>Spiny dry rot fungus</common_name>
+ <rank>species</rank>
+ <uri>http://mycoweb-stv.narod.ru/fungi/Submitted/STV1/Hydnomerulius_pinastri_1_STV_20100913.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>JAAARG</name>
+ <taxonomy>
+ <id provider="uniprot">202697</id>
+ <scientific_name>Jaapia argillacea</scientific_name>
+ <rank>species</rank>
+ <uri>http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>GLOTR</name>
+ <taxonomy>
+ <id provider="uniprot">104355</id>
+ <code>GLOTR</code>
+ <scientific_name>Gloeophyllum trabeum</scientific_name>
+ <common_name>Brown rot fungus</common_name>
+ <rank>species</rank>
+ <uri>http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">5303</id>
+ <scientific_name>Aphyllophorales</scientific_name>
+ <authority>Gäum. (1926)</authority>
+ <common_name>Shelf Fungi</common_name>
+ <synonym>Polyporales</synonym>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">83233</id>
+ <scientific_name>Coriolaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <reference doi="10.1017/S1477200005001623">
+ <desc>The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes)</desc>
+ </reference>
+ <reference>
+ </reference>
+ <reference>
+ </reference>
+ <clade>
+ <name>Postia & Fomitopsis & Wolfiporia & Trametes</name>
+ <clade>
+ <name>Antrodia clade</name>
+ <taxonomy>
+ <common_name>Antrodia clade</common_name>
+ </taxonomy>
+ <clade>
+ <name>FOMPIN</name>
+ <taxonomy>
+ <id provider="uniprot">40483</id>
+ <scientific_name>Fomitopsis pinicola</scientific_name>
+ <authority>P. Karst. 1881</authority>
+ <common_name>Red banded polypore</common_name>
+ <synonym>Fomes pinicola</synonym>
+ <rank>species</rank>
+ <uri>http://content6.eol.org/content/2009/06/07/01/48471_large.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>POSPL</name>
+ <taxonomy>
+ <id provider="uniprot">104341</id>
+ <scientific_name>Postia placenta</scientific_name>
+ <rank>species</rank>
+ <uri>http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>core polyporoid clade</name>
+ <taxonomy>
+ <common_name>core polyporoid clade</common_name>
+ </taxonomy>
+ <clade>
+ <name>TRAVE</name>
+ <taxonomy>
+ <id provider="uniprot">5325</id>
+ <code>TRAVE</code>
+ <scientific_name>Trametes versicolor</scientific_name>
+ <authority>(L.) Lloyd 1921</authority>
+ <common_name>White-rot fungus</common_name>
+ <synonym>Coriolus versicolor</synonym>
+ <synonym>Bjerkandera versicolor</synonym>
+ <rank>species</rank>
+ <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg</uri>
+ <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg</uri>
+ <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg</uri>
+ <uri>http://genome.jgi-psf.org/public/Trave1/Trametes_versicolor.JPG</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>WOLCOC</name>
+ <taxonomy>
+ <id provider="uniprot">81056</id>
+ <scientific_name>Wolfiporia cocos</scientific_name>
+ <rank>species</rank>
+ <uri>http://toolate.s7.coreserver.jp/kinoko/fungi/wolfiporia_cocos/w_cocos_002.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>CERSU</name>
+ <taxonomy>
+ <id provider="uniprot">42742</id>
+ <code>CERSU</code>
+ <scientific_name>Ceriporiopsis subvermispora</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>DICSQU</name>
+ <taxonomy>
+ <id provider="uniprot">114155</id>
+ <scientific_name>Dichomitus squalens</scientific_name>
+ <authority>(P. Karst.) D. A. Reid 1965</authority>
+ <common_name>Red rot</common_name>
+ <synonym>Polyporus anceps</synonym>
+ <rank>species</rank>
+ <uri>http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>HETAN</name>
+ <taxonomy>
+ <id provider="uniprot">13563</id>
+ <code>HETAN</code>
+ <scientific_name>Heterobasidion annosum</scientific_name>
+ <common_name>Root rot fungus</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">5215</id>
+ <scientific_name>Tremellaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>CRYNE</name>
+ <taxonomy>
+ <id provider="uniprot">5207</id>
+ <code>CRYNE</code>
+ <scientific_name>Cryptococcus neoformans</scientific_name>
+ <synonym>Filobasidiella neoformans</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>TREME</name>
+ <taxonomy>
+ <id provider="eol">1029985</id>
+ <code>TREME</code>
+ <scientific_name>Tremella mesenterica</scientific_name>
+ <authority>Pers. 1800</authority>
+ <common_name>Jelly fungus</common_name>
+ <synonym>Yellow Brain</synonym>
+ <synonym>Tremella lutescens</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">452284</id>
+ <scientific_name>Ustilaginomycotina</scientific_name>
+ <rank>subphylum</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">425265</id>
+ <code>MALGO</code>
+ <scientific_name>Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</scientific_name>
+ <common_name>Dandruff-associated fungus</common_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>USTMA</name>
+ <taxonomy>
+ <id provider="uniprot">5270</id>
+ <code>USTMA</code>
+ <scientific_name>Ustilago maydis</scientific_name>
+ <common_name>Smut fungus</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">29000</id>
+ <scientific_name>Pucciniomycotina</scientific_name>
+ <rank>subphylum</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">5258</id>
+ <scientific_name>Pucciniales</scientific_name>
+ <common_name>rusts</common_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <name>MELLP</name>
+ <taxonomy>
+ <id provider="eol">156696</id>
+ <code>MELLP</code>
+ <scientific_name>Melampsora laricis-populina</scientific_name>
+ <authority>Kleb. 1902</authority>
+ <synonym>Melampsora larici-populina</synonym>
+ <synonym>Melampsora laricipopulina</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>PUCGR</name>
+ <taxonomy>
+ <id provider="eol">1029947</id>
+ <code>PUCGR</code>
+ <scientific_name>Puccinia graminis</scientific_name>
+ <authority>Pers. 1794</authority>
+ <common_name>Black stem rust fungus</common_name>
+ <synonym>Wheat rust</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">89013</id>
+ <scientific_name>mitosporic Sporidiobolales</scientific_name>
+ </taxonomy>
+ <clade>
+ <name>RHOGR</name>
+ <taxonomy>
+ <id provider="uniprot">29898</id>
+ <code>RHOGR</code>
+ <scientific_name>Rhodotorula graminis</scientific_name>
+ <common_name>Yeast</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>SPORO</name>
+ <taxonomy>
+ <id provider="eol">1013696</id>
+ <scientific_name>Sporobolomyces roseus</scientific_name>
+ <authority>Kluyver & C. B. Niel 1924</authority>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>WALSE</name>
+ <taxonomy>
+ <id provider="uniprot">148960</id>
+ <code>WALSE</code>
+ <scientific_name>Wallemia sebi</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">451507</id>
+ <scientific_name>Mucoromycotina</scientific_name>
+ <rank>subphylum</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">34489</id>
+ <scientific_name>Mucoraceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>MUCCI</name>
+ <taxonomy>
+ <id provider="uniprot">36080</id>
+ <code>MUCCI</code>
+ <scientific_name>Mucor circinelloides</scientific_name>
+ <synonym>Mucor griseo-roseus</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>PHYBL</name>
+ <taxonomy>
+ <id provider="uniprot">4837</id>
+ <code>PHYBL</code>
+ <scientific_name>Phycomyces blakesleeanus</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>RHIOR</name>
+ <taxonomy>
+ <id provider="uniprot">64495</id>
+ <code>RHIOR</code>
+ <scientific_name>Rhizopus oryzae</scientific_name>
+ <synonym>Rhizopus delemar</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>MORVER</name>
+ <taxonomy>
+ <id provider="uniprot">78898</id>
+ <scientific_name>Mortierella verticillata</scientific_name>
+ <rank>species</rank>
+ <uri>http://www.diark.org/img/species_pict/Mortierella_verticillata</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>COEREV</name>
+ <taxonomy>
+ <id provider="uniprot">61392</id>
+ <scientific_name>Coemansia reversa</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">28583</id>
+ <code>ALLMA</code>
+ <scientific_name>Allomyces macrogynus</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">4761</id>
+ <scientific_name>Chytridiomycota</scientific_name>
+ <common_name>chytrids</common_name>
+ <synonym>Mastigomycotina</synonym>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">451435</id>
+ <scientific_name>Chytridiomycetes</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">109871</id>
+ <code>BATDE</code>
+ <scientific_name>Batrachochytrium dendrobatidis</scientific_name>
+ <common_name>Frog chytrid fungus</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">109760</id>
+ <code>SPIPN</code>
+ <scientific_name>Spizellomyces punctatus</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>GONPRO</name>
+ <taxonomy>
+ <id provider="eol">157984</id>
+ <scientific_name>Gonapodya prolifera</scientific_name>
+ <authority>A. Fisch. 1892</authority>
+ <rank>species</rank>
+ <uri>http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>PIRSPE</name>
+ <taxonomy>
+ <id provider="uniprot">73868</id>
+ <scientific_name>Piromyces sp. E2</scientific_name>
+ <rank>species</rank>
+ <uri>http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>ENCCU</name>
+ <taxonomy>
+ <id provider="uniprot">6035</id>
+ <code>ENCCU</code>
+ <scientific_name>Encephalitozoon cuniculi</scientific_name>
+ <common_name>Microsporidian parasite</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>Fonticula & Nucleariidae</name>
+ <reference doi="10.1093/molbev/msp185">
+ </reference>
+ <clade>
+ <name>FONALB</name>
+ <taxonomy>
+ <id provider="uniprot">691883</id>
+ <scientific_name>Fonticula alba</scientific_name>
+ <synonym>Fonticula alba Worley, Raper & Hohl. 1979</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>NUCSIM</name>
+ <taxonomy>
+ <id provider="uniprot">154970</id>
+ <scientific_name>Nuclearia simplex</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>THETRA</name>
+ <taxonomy>
+ <id provider="uniprot">529818</id>
+ <scientific_name>Thecamonas trahens</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>Amoebozoa</name>
+ <taxonomy>
+ <id provider="uniprot">554915</id>
+ <scientific_name>Amoebozoa</scientific_name>
+ </taxonomy>
+ <clade>
+ <name>Dictyostelium</name>
+ <taxonomy>
+ <id provider="uniprot">5782</id>
+ <scientific_name>Dictyostelium</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>DICDI</name>
+ <taxonomy>
+ <id provider="uniprot">44689</id>
+ <code>DICDI</code>
+ <scientific_name>Dictyostelium discoideum</scientific_name>
+ <common_name>Slime mold</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>DICPU</name>
+ <taxonomy>
+ <id provider="uniprot">5786</id>
+ <code>DICPU</code>
+ <scientific_name>Dictyostelium purpureum</scientific_name>
+ <common_name>Slime mold</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>ENTHI</name>
+ <taxonomy>
+ <id provider="uniprot">5759</id>
+ <code>ENTHI</code>
+ <scientific_name>Entamoeba histolytica</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>Bikonta</name>
+ <reference doi="10.1099/ijs.0.63216-0">
+ </reference>
+ <clade>
+ <name>Corticata</name>
+ <clade>
+ <name>Archaeplastida</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">33090</id>
+ <scientific_name>Viridiplantae</scientific_name>
+ <common_name>green plants</common_name>
+ <rank>kingdom</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">3193</id>
+ <scientific_name>Embryophyta</scientific_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">58023</id>
+ <scientific_name>Tracheophyta</scientific_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">3398</id>
+ <scientific_name>Magnoliophyta</scientific_name>
+ <common_name>flowering plants</common_name>
+ <synonym>Angiospermae</synonym>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">71240</id>
+ <scientific_name>eudicotyledons</scientific_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">91827</id>
+ <scientific_name>core eudicotyledons</scientific_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">71275</id>
+ <scientific_name>rosids</scientific_name>
+ <rank>subclass</rank>
+ </taxonomy>
+ <clade>
+ <name>fabids & malvids</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">91835</id>
+ <scientific_name>fabids</scientific_name>
+ </taxonomy>
+ <clade>
+ <name>Rosales & Cucurbitales & Fabales</name>
+ <clade>
+ <name>Rosales & Cucurbitales</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">3745</id>
+ <scientific_name>Rosaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>FRAVE</name>
+ <taxonomy>
+ <id provider="uniprot">57918</id>
+ <code>FRAVE</code>
+ <scientific_name>Fragaria vesca</scientific_name>
+ <common_name>Woodland strawberry</common_name>
+ <synonym>Fragaria vesca L.</synonym>
+ <synonym>European strawberry</synonym>
+ <synonym>alpine strawberry</synonym>
+ <rank>species</rank>
+ <uri>http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg</uri>
+ <uri>http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>PRUPE</name>
+ <taxonomy>
+ <id provider="uniprot">3760</id>
+ <code>PRUPE</code>
+ <scientific_name>Prunus persica</scientific_name>
+ <common_name>Peach</common_name>
+ <synonym>Persica vulgaris</synonym>
+ <synonym>Amygdalus persica</synonym>
+ <rank>species</rank>
+ <uri>http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>CUCSA</name>
+ <taxonomy>
+ <id provider="uniprot">3659</id>
+ <code>CUCSA</code>
+ <scientific_name>Cucumis sativus</scientific_name>
+ <common_name>Cucumber</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">3814</id>
+ <scientific_name>Papilionoideae</scientific_name>
+ <rank>subfamily</rank>
+ </taxonomy>
+ <clade>
+ <name>SOYBN</name>
+ <taxonomy>
+ <id provider="uniprot">3847</id>
+ <code>SOYBN</code>
+ <scientific_name>Glycine max</scientific_name>
+ <authority>cv. Wye</authority>
+ <common_name>Soybean</common_name>
+ <synonym>Glycine hispida</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>MEDTR</name>
+ <taxonomy>
+ <id provider="uniprot">3880</id>
+ <code>MEDTR</code>
+ <scientific_name>Medicago truncatula</scientific_name>
+ <common_name>Barrel medic</common_name>
+ <synonym>Medicago tribuloides</synonym>
+ <rank>species</rank>
+ <uri>http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">3646</id>
+ <scientific_name>Malpighiales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">3977</id>
+ <scientific_name>Euphorbiaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>MANES</name>
+ <taxonomy>
+ <id provider="uniprot">3983</id>
+ <code>MANES</code>
+ <scientific_name>Manihot esculenta</scientific_name>
+ <common_name>Tapioca</common_name>
+ <synonym>Jatropha manihot</synonym>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>RICCO</name>
+ <taxonomy>
+ <id provider="uniprot">3988</id>
+ <code>RICCO</code>
+ <scientific_name>Ricinus communis</scientific_name>
+ <common_name>Castor bean</common_name>
+ <synonym>Ricinus sanguineus</synonym>
+ <rank>species</rank>
+ <uri>http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>POPTR</name>
+ <taxonomy>
+ <id provider="uniprot">3694</id>
+ <code>POPTR</code>
+ <scientific_name>Populus trichocarpa</scientific_name>
+ <common_name>Western balsam poplar</common_name>
+ <synonym>Populus balsamifera subsp. trichocarpa</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">91836</id>
+ <scientific_name>malvids</scientific_name>
+ </taxonomy>
+ <clade>
+ <name>Brassicales & Sapindales</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">3699</id>
+ <scientific_name>Brassicales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">3700</id>
+ <scientific_name>Brassicaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">3701</id>
+ <scientific_name>Arabidopsis</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>ARALY</name>
+ <taxonomy>
+ <id provider="uniprot">59689</id>
+ <code>ARALY</code>
+ <scientific_name>Arabidopsis lyrata</scientific_name>
+ <common_name>Lyre-leaved rock-cress</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>ARATH</name>
+ <taxonomy>
+ <id provider="uniprot">3702</id>
+ <code>ARATH</code>
+ <scientific_name>Arabidopsis thaliana</scientific_name>
+ <common_name>Mouse-ear cress</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">98038</id>
+ <code>THEHA</code>
+ <scientific_name>Thellungiella halophila</scientific_name>
+ <common_name>Salt cress</common_name>
+ <rank>species</rank>
+ <uri>http://mplant.oxfordjournals.org/content/2/1/3/F1.large.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>CARPA</name>
+ <taxonomy>
+ <id provider="uniprot">3649</id>
+ <code>CARPA</code>
+ <scientific_name>Carica papaya</scientific_name>
+ <common_name>Papaya</common_name>
+ <rank>species</rank>
+ <uri>http://www.biopix.com/photos/jko-carica-papaya-00412.jpg</uri>
+ <uri>http://www.texasriviera.com/greenthumbs/papaya10.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">2706</id>
+ <scientific_name>Citrus</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>CITCLE</name>
+ <taxonomy>
+ <id provider="uniprot">85681</id>
+ <scientific_name>Citrus clementina</scientific_name>
+ <synonym>Citrus clementina hort. ex Tanaka</synonym>
+ <rank>species</rank>
+ <uri>http://palmen-bolschetz.de/images/citrus%20clementine.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>CITSI</name>
+ <taxonomy>
+ <id provider="uniprot">2711</id>
+ <code>CITSI</code>
+ <scientific_name>Citrus sinensis</scientific_name>
+ <common_name>Sweet orange</common_name>
+ <synonym>Citrus x sinensis</synonym>
+ <synonym>Citrus aurantium var. sinensis</synonym>
+ <rank>species</rank>
+ <uri>http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>EUCGR</name>
+ <taxonomy>
+ <id provider="uniprot">71139</id>
+ <code>EUCGR</code>
+ <scientific_name>Eucalyptus grandis</scientific_name>
+ <common_name>Flooded gum</common_name>
+ <rank>species</rank>
+ <uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>VITVI</name>
+ <taxonomy>
+ <id provider="eol">582304</id>
+ <code>VITVI</code>
+ <scientific_name>Vitis vinifera</scientific_name>
+ <common_name>Grape</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">91888</id>
+ <scientific_name>lamiids</scientific_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">4070</id>
+ <scientific_name>Solanaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">4107</id>
+ <scientific_name>Solanum</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">49274</id>
+ <scientific_name>Lycopersicon</scientific_name>
+ <rank>subgenus</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">4081</id>
+ <code>SOLLC</code>
+ <scientific_name>Solanum lycopersicum</scientific_name>
+ <common_name>Tomato</common_name>
+ <synonym>Lycopersicon esculentum</synonym>
+ <rank>species</rank>
+ <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">4084</id>
+ <code>SOLPI</code>
+ <scientific_name>Solanum pimpinellifolium</scientific_name>
+ <common_name>Currant tomato</common_name>
+ <synonym>Lycopersicon pimpinellifolium</synonym>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/b/b8/Currant_tomato.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">4113</id>
+ <code>SOLTU</code>
+ <scientific_name>Solanum tuberosum</scientific_name>
+ <common_name>Potato</common_name>
+ <rank>species</rank>
+ <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0508/0344.jpeg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">4097</id>
+ <code>TOBAC</code>
+ <scientific_name>Nicotiana tabacum</scientific_name>
+ <common_name>Common tobacco</common_name>
+ <rank>species</rank>
+ <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>MIMGU</name>
+ <taxonomy>
+ <id provider="uniprot">4155</id>
+ <code>MIMGU</code>
+ <scientific_name>Mimulus guttatus</scientific_name>
+ <common_name>Yellow monkey flower</common_name>
+ <synonym>Yellow monkey flower</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>AQUCA</name>
+ <taxonomy>
+ <id provider="uniprot">218851</id>
+ <code>AQUCA</code>
+ <scientific_name>Aquilegia caerulea</scientific_name>
+ <authority>E.James</authority>
+ <common_name>Rocky mountain columbine</common_name>
+ <synonym>Aquilegia coerulea</synonym>
+ <rank>species</rank>
+ <uri>http://content9.eol.org/content/2010/01/01/03/15137_large.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">4479</id>
+ <scientific_name>Poaceae</scientific_name>
+ <common_name>grass family</common_name>
+ <synonym>Gramineae</synonym>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">147369</id>
+ <scientific_name>Panicoideae</scientific_name>
+ <authority>Link, 1827</authority>
+ <synonym>Centothecoideae</synonym>
+ <rank>subfamily</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">147429</id>
+ <scientific_name>Andropogoneae</scientific_name>
+ <authority>Dumort., 1824</authority>
+ <rank>tribe</rank>
+ </taxonomy>
+ <clade>
+ <name>SORBI</name>
+ <taxonomy>
+ <id provider="uniprot">4558</id>
+ <code>SORBI</code>
+ <scientific_name>Sorghum bicolor</scientific_name>
+ <common_name>Sorghum</common_name>
+ <synonym>Sorghum vulgare</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>MAIZE</name>
+ <taxonomy>
+ <id provider="uniprot">4577</id>
+ <code>MAIZE</code>
+ <scientific_name>Zea mays</scientific_name>
+ <common_name>Maize</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">147428</id>
+ <scientific_name>Paniceae</scientific_name>
+ <rank>tribe</rank>
+ </taxonomy>
+ <clade>
+ <name>PANVIR</name>
+ <taxonomy>
+ <id provider="uniprot">38727</id>
+ <scientific_name>Panicum virgatum</scientific_name>
+ <common_name>switchgrass</common_name>
+ <rank>species</rank>
+ <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>SETIT</name>
+ <taxonomy>
+ <id provider="uniprot">4555</id>
+ <code>SETIT</code>
+ <scientific_name>Setaria italica</scientific_name>
+ <common_name>Foxtail millet</common_name>
+ <synonym>Panicum italicum</synonym>
+ <rank>species</rank>
+ <uri>http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">359160</id>
+ <scientific_name>BEP clade</scientific_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">4527</id>
+ <scientific_name>Oryza</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>ORYSA</name>
+ <taxonomy>
+ <id provider="uniprot">4530</id>
+ <code>ORYSA</code>
+ <scientific_name>Oryza sativa</scientific_name>
+ <common_name>Rice</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>ORYSJ</name>
+ <taxonomy>
+ <id provider="uniprot">39947</id>
+ <code>ORYSJ</code>
+ <scientific_name>Oryza sativa subsp. japonica</scientific_name>
+ <common_name>Rice</common_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>BRADI</name>
+ <taxonomy>
+ <id provider="uniprot">15368</id>
+ <code>BRADI</code>
+ <scientific_name>Brachypodium distachyon</scientific_name>
+ <common_name>Purple false brome</common_name>
+ <synonym>Trachynia distachya</synonym>
+ <rank>species</rank>
+ <uri>http://content5.eol.org/content/2011/01/15/20/16311_large.jpg</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>SELMO</name>
+ <taxonomy>
+ <id provider="uniprot">34167</id>
+ <code>SELMO</code>
+ <scientific_name>Selaginella mollis</scientific_name>
+ <common_name>Moss</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>PHYPA</name>
+ <taxonomy>
+ <id provider="uniprot">145481</id>
+ <code>PHYPA</code>
+ <scientific_name>Physcomitrella patens subsp. patens</scientific_name>
+ <common_name>Moss</common_name>
+ <rank>subspecies</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">3041</id>
+ <scientific_name>Chlorophyta</scientific_name>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">13792</id>
+ <scientific_name>Mamiellales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">70447</id>
+ <scientific_name>Ostreococcus</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>OSTLU</name>
+ <taxonomy>
+ <id provider="uniprot">436017</id>
+ <code>OSTLU</code>
+ <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>OSTRC</name>
+ <taxonomy>
+ <id provider="uniprot">385169</id>
+ <scientific_name>Ostreococcus sp. RCC809</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>OSTTA</name>
+ <taxonomy>
+ <id provider="uniprot">70448</id>
+ <code>OSTTA</code>
+ <scientific_name>Ostreococcus tauri</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">38832</id>
+ <scientific_name>Micromonas</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>MICPC</name>
+ <taxonomy>
+ <id provider="uniprot">564608</id>
+ <code>MICPC</code>
+ <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>
+ <common_name>Picoplanktonic green alga</common_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>MICSR</name>
+ <taxonomy>
+ <id provider="uniprot">296587</id>
+ <code>MICSR</code>
+ <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>
+ <common_name>Picoplanktonic green alga</common_name>
+ <synonym>Micromonas sp. RCC299</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>Trebouxiophyceae & Chlorophyceae</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">75966</id>
+ <scientific_name>Trebouxiophyceae</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <name>ASTSPC</name>
+ <taxonomy>
+ <id provider="uniprot">763042</id>
+ <scientific_name>Asterochloris sp. Cgr/DA1pho</scientific_name>
+ <rank>species</rank>
+ <uri>http://genome.jgi-psf.org/Astpho1/Figure_3.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>CHLSP</name>
+ <taxonomy>
+ <id provider="uniprot">554065</id>
+ <scientific_name>Chlorella variabilis</scientific_name>
+ <synonym>Chlorella sp. NC64A</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>CHLVUL</name>
+ <taxonomy>
+ <id provider="uniprot">574566</id>
+ <scientific_name>Coccomyxa sp. C-169</scientific_name>
+ <synonym>Chlorella vulgaris C-169</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">3042</id>
+ <scientific_name>Chlamydomonadales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <name>CHLRE</name>
+ <taxonomy>
+ <id provider="uniprot">3055</id>
+ <code>CHLRE</code>
+ <scientific_name>Chlamydomonas reinhardtii</scientific_name>
+ <synonym>Chlamydomonas smithii</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>VOLCA</name>
+ <taxonomy>
+ <id provider="uniprot">3067</id>
+ <code>VOLCA</code>
+ <scientific_name>Volvox carteri</scientific_name>
+ <common_name>Green alga</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>CYAME</name>
+ <taxonomy>
+ <id provider="uniprot">45157</id>
+ <code>CYAME</code>
+ <scientific_name>Cyanidioschyzon merolae</scientific_name>
+ <common_name>Red alga</common_name>
+ <rank>species</rank>
+ <uri>http://merolae.biol.s.u-tokyo.ac.jp/</uri>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>Chromalveolate</name>
+ <reference doi="10.1073/pnas.0712248105">
+ </reference>
+ <clade>
+ <name>Heterokonta & Alveolata</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">33630</id>
+ <scientific_name>Alveolata</scientific_name>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">5794</id>
+ <scientific_name>Apicomplexa</scientific_name>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">422676</id>
+ <scientific_name>Aconoidasida</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">5820</id>
+ <scientific_name>Plasmodium</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>PLACH</name>
+ <taxonomy>
+ <id provider="uniprot">5825</id>
+ <code>PLACH</code>
+ <scientific_name>Plasmodium chabaudi</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>PLAFA</name>
+ <taxonomy>
+ <id provider="uniprot">5833</id>
+ <code>PLAFA</code>
+ <scientific_name>Plasmodium falciparum</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>PLAYO</name>
+ <taxonomy>
+ <id provider="uniprot">73239</id>
+ <code>PLAYO</code>
+ <scientific_name>Plasmodium yoelii yoelii</scientific_name>
+ <rank>subspecies</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>Theileria</name>
+ <taxonomy>
+ <id provider="uniprot">5873</id>
+ <scientific_name>Theileria</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>THEAN</name>
+ <taxonomy>
+ <id provider="uniprot">5874</id>
+ <code>THEAN</code>
+ <scientific_name>Theileria annulata</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>THEPA</name>
+ <taxonomy>
+ <id provider="uniprot">5875</id>
+ <code>THEPA</code>
+ <scientific_name>Theileria parva</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">423054</id>
+ <scientific_name>Eimeriorina</scientific_name>
+ <rank>suborder</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">5806</id>
+ <scientific_name>Cryptosporidium</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>CRYHO</name>
+ <taxonomy>
+ <id provider="uniprot">237895</id>
+ <code>CRYHO</code>
+ <scientific_name>Cryptosporidium hominis</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>CRYPV</name>
+ <taxonomy>
+ <id provider="uniprot">5807</id>
+ <code>CRYPV</code>
+ <scientific_name>Cryptosporidium parvum</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>Eimeria & Toxoplasma</name>
+ <reference doi="10.1093/molbev/msn213">
+ <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>
+ </reference>
+ <reference>
+ </reference>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">5802</id>
+ <code>EIMTE</code>
+ <scientific_name>Eimeria tenella</scientific_name>
+ <common_name>Coccidian parasite</common_name>
+ <rank>species</rank>
+ <uri>http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg</uri>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>TOXGO</name>
+ <taxonomy>
+ <id provider="uniprot">5811</id>
+ <code>TOXGO</code>
+ <scientific_name>Toxoplasma gondii</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">6020</id>
+ <scientific_name>Oligohymenophorea</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <name>PARTE</name>
+ <taxonomy>
+ <id provider="uniprot">5888</id>
+ <code>PARTE</code>
+ <scientific_name>Paramecium tetraurelia</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>TETTH</name>
+ <taxonomy>
+ <id provider="uniprot">5911</id>
+ <code>TETTH</code>
+ <scientific_name>Tetrahymena thermophila</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>Heterokonta</name>
+ <taxonomy>
+ <id provider="uniprot">33634</id>
+ <scientific_name>stramenopiles</scientific_name>
+ <synonym>Chromophyta</synonym>
+ </taxonomy>
+ <clade>
+ <name>Pelagophyceae_Bacillariophyta</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">2836</id>
+ <scientific_name>Bacillariophyta</scientific_name>
+ <common_name>diatoms</common_name>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">33850</id>
+ <scientific_name>Bacillariophycidae</scientific_name>
+ </taxonomy>
+ <clade>
+ <name>FRACY</name>
+ <taxonomy>
+ <id provider="eol">911694</id>
+ <code>FRACY</code>
+ <scientific_name>Fragilariopsis cylindrus</scientific_name>
+ <authority>Krieger</authority>
+ <synonym>Nitzschia cylindrus</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>PHATR</name>
+ <taxonomy>
+ <id provider="eol">912693</id>
+ <code>PHATR</code>
+ <scientific_name>Phaeodactylum tricornutum</scientific_name>
+ <authority>Bohlin</authority>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>THAPS</name>
+ <taxonomy>
+ <id provider="eol">916868</id>
+ <code>THAPS</code>
+ <scientific_name>Thalassiosira pseudonana</scientific_name>
+ <authority>Hasle & Heimdal</authority>
+ <common_name>Marine diatom</common_name>
+ <synonym>Cyclotella nana</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>AURAN</name>
+ <taxonomy>
+ <id provider="eol">912461</id>
+ <code>AURAN</code>
+ <scientific_name>Aureococcus anophagefferens</scientific_name>
+ <authority>Hargraves & Sieburth</authority>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">4783</id>
+ <scientific_name>Phytophthora</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>PHYIN</name>
+ <taxonomy>
+ <id provider="uniprot">4787</id>
+ <code>PHYIN</code>
+ <scientific_name>Phytophthora infestans</scientific_name>
+ <common_name>Potato late blight fungus</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>PHYRM</name>
+ <taxonomy>
+ <id provider="uniprot">164328</id>
+ <code>PHYRM</code>
+ <scientific_name>Phytophthora ramorum</scientific_name>
+ <common_name>Sudden oak death agent</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>PHYSO</name>
+ <taxonomy>
+ <id provider="uniprot">67593</id>
+ <scientific_name>Phytophthora sojae</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>EMIHU</name>
+ <taxonomy>
+ <id provider="uniprot">2903</id>
+ <code>EMIHU</code>
+ <scientific_name>Emiliania huxleyi</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>Excavata</name>
+ <reference doi="10.1038/nature04546">
+ </reference>
+ <clade>
+ <name>Kinetoplastida_Heterolobosea</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">5654</id>
+ <scientific_name>Trypanosomatidae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>LEIMA</name>
+ <taxonomy>
+ <id provider="uniprot">5664</id>
+ <code>LEIMA</code>
+ <scientific_name>Leishmania major</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>TRYBB</name>
+ <taxonomy>
+ <id provider="uniprot">5702</id>
+ <code>TRYBB</code>
+ <scientific_name>Trypanosoma brucei brucei</scientific_name>
+ <rank>subspecies</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>NAEGR</name>
+ <taxonomy>
+ <id provider="uniprot">5762</id>
+ <code>NAEGR</code>
+ <scientific_name>Naegleria gruberi</scientific_name>
+ <common_name>Amoeba</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>Metamonada</name>
+ <clade>
+ <name>GIALA</name>
+ <taxonomy>
+ <id provider="uniprot">5741</id>
+ <code>GIALA</code>
+ <scientific_name>Giardia lamblia</scientific_name>
+ <synonym>Giardia intestinalis</synonym>
+ <synonym>Giardia lamblia</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>TRIVA</name>
+ <taxonomy>
+ <id provider="uniprot">5722</id>
+ <code>TRIVA</code>
+ <scientific_name>Trichomonas vaginalis</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>Archaea</name>
+ <taxonomy>
+ <id provider="uniprot">2157</id>
+ <scientific_name>Archaea</scientific_name>
+ <rank>superkingdom</rank>
+ </taxonomy>
+ <clade>
+ <name>a_62</name>
+ <clade>
+ <name>a_56</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">28890</id>
+ <scientific_name>Euryarchaeota</scientific_name>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <name>a_44</name>
+ <clade>
+ <name>a_28</name>
+ <clade>
+ <name>a_26</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">224756</id>
+ <scientific_name>Methanomicrobia</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <name>a_14</name>
+ <clade>
+ <name>a_12</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">2206</id>
+ <scientific_name>Methanosarcinaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">2207</id>
+ <scientific_name>Methanosarcina</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>a_2</name>
+ <clade>
+ <name>METAC</name>
+ <taxonomy>
+ <id provider="uniprot">2214</id>
+ <code>METAC</code>
+ <scientific_name>Methanosarcina acetivorans</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>METBF</name>
+ <taxonomy>
+ <id provider="uniprot">269797</id>
+ <code>METBF</code>
+ <scientific_name>Methanosarcina barkeri (strain Fusaro / DSM 804)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>METMA</name>
+ <taxonomy>
+ <id provider="uniprot">2209</id>
+ <code>METMA</code>
+ <scientific_name>Methanosarcina mazei</scientific_name>
+ <synonym>Methanosarcina frisia</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>METBU</name>
+ <taxonomy>
+ <id provider="uniprot">259564</id>
+ <code>METBU</code>
+ <scientific_name>Methanococcoides burtonii (strain DSM 6242)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>a_11</name>
+ <taxonomy>
+ <id provider="uniprot">2191</id>
+ <scientific_name>Methanomicrobiales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <name>a_9</name>
+ <clade>
+ <name>METB6</name>
+ <taxonomy>
+ <id provider="uniprot">456442</id>
+ <code>METB6</code>
+ <scientific_name>Methanoregula boonei (strain 6A8)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>METHU</name>
+ <taxonomy>
+ <id provider="uniprot">2203</id>
+ <code>METHU</code>
+ <scientific_name>Methanospirillum hungatei</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>METMJ</name>
+ <taxonomy>
+ <id provider="uniprot">368407</id>
+ <code>METMJ</code>
+ <scientific_name>Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>METLZ</name>
+ <taxonomy>
+ <id provider="uniprot">410358</id>
+ <code>METLZ</code>
+ <scientific_name>Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>METTP</name>
+ <taxonomy>
+ <id provider="uniprot">349307</id>
+ <code>METTP</code>
+ <scientific_name>Methanosaeta thermophila (strain DSM 6194 / PT)</scientific_name>
+ <synonym>Methanothrix thermophila (strain DSM 6194 / PT)</synonym>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>a_25</name>
+ <taxonomy>
+ <id provider="uniprot">2236</id>
+ <scientific_name>Halobacteriaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>a_23</name>
+ <clade>
+ <name>a_19</name>
+ <clade>
+ <name>HALMA</name>
+ <taxonomy>
+ <id provider="uniprot">2238</id>
+ <code>HALMA</code>
+ <scientific_name>Haloarcula marismortui</scientific_name>
+ <synonym>Halobacterium marismortui</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>NATPH</name>
+ <taxonomy>
+ <id provider="uniprot">2257</id>
+ <code>NATPH</code>
+ <scientific_name>Natronomonas pharaonis</scientific_name>
+ <common_name>Natronobacterium pharaonis</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>a_22</name>
+ <taxonomy>
+ <id provider="uniprot">2239</id>
+ <scientific_name>Halobacterium</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>HALS3</name>
+ <taxonomy>
+ <id provider="uniprot">478009</id>
+ <code>HALS3</code>
+ <scientific_name>Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>HALSP</name>
+ <taxonomy>
+ <id provider="uniprot">2243</id>
+ <code>HALSP</code>
+ <scientific_name>Halobacterium sp.</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>HALWD</name>
+ <taxonomy>
+ <id provider="uniprot">362976</id>
+ <code>HALWD</code>
+ <scientific_name>Haloquadratum walsbyi (strain DSM 16790)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>ARCFU</name>
+ <taxonomy>
+ <id provider="uniprot">2234</id>
+ <code>ARCFU</code>
+ <scientific_name>Archaeoglobus fulgidus</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>a_43</name>
+ <clade>
+ <name>a_41</name>
+ <clade>
+ <name>a_35</name>
+ <taxonomy>
+ <id provider="uniprot">2182</id>
+ <scientific_name>Methanococcales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <name>a_31</name>
+ <clade>
+ <name>METJA</name>
+ <taxonomy>
+ <id provider="uniprot">2190</id>
+ <code>METJA</code>
+ <scientific_name>Methanocaldococcus jannaschii</scientific_name>
+ <synonym>Methanococcus jannaschii</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>META3</name>
+ <taxonomy>
+ <id provider="uniprot">419665</id>
+ <code>META3</code>
+ <scientific_name>Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>a_34</name>
+ <taxonomy>
+ <id provider="uniprot">2184</id>
+ <scientific_name>Methanococcus</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>METMP</name>
+ <taxonomy>
+ <id provider="uniprot">39152</id>
+ <code>METMP</code>
+ <scientific_name>Methanococcus maripaludis</scientific_name>
+ <synonym>Methanococcus deltae</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>METVS</name>
+ <taxonomy>
+ <id provider="uniprot">406327</id>
+ <code>METVS</code>
+ <scientific_name>Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>a_40</name>
+ <taxonomy>
+ <id provider="uniprot">2159</id>
+ <scientific_name>Methanobacteriaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>a_38</name>
+ <clade>
+ <name>METS3</name>
+ <taxonomy>
+ <id provider="uniprot">420247</id>
+ <code>METS3</code>
+ <scientific_name>Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>METST</name>
+ <taxonomy>
+ <id provider="uniprot">339860</id>
+ <code>METST</code>
+ <scientific_name>Methanosphaera stadtmanae (strain DSM 3091)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>METTH</name>
+ <taxonomy>
+ <id provider="uniprot">187420</id>
+ <code>METTH</code>
+ <scientific_name>Methanobacterium thermoautotrophicum</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>METKA</name>
+ <taxonomy>
+ <id provider="uniprot">2320</id>
+ <code>METKA</code>
+ <scientific_name>Methanopyrus kandleri</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>a_51</name>
+ <taxonomy>
+ <id provider="uniprot">2259</id>
+ <scientific_name>Thermococcaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>a_47</name>
+ <clade>
+ <name>PYRFU</name>
+ <taxonomy>
+ <id provider="uniprot">2261</id>
+ <code>PYRFU</code>
+ <scientific_name>Pyrococcus furiosus</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">69014</id>
+ <code>PYRKO</code>
+ <scientific_name>Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)</scientific_name>
+ <synonym>Thermococcus kodakaraensis (strain KOD1)</synonym>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>a_50</name>
+ <taxonomy>
+ <id provider="uniprot">2260</id>
+ <scientific_name>Pyrococcus</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>PYRAB</name>
+ <taxonomy>
+ <id provider="uniprot">29292</id>
+ <code>PYRAB</code>
+ <scientific_name>Pyrococcus abyssi</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>PYRHO</name>
+ <taxonomy>
+ <id provider="uniprot">53953</id>
+ <code>PYRHO</code>
+ <scientific_name>Pyrococcus horikoshii</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>a_55</name>
+ <clade>
+ <name>NANEQ</name>
+ <taxonomy>
+ <id provider="uniprot">228908</id>
+ <code>NANEQ</code>
+ <scientific_name>Nanoarchaeum equitans (strain Kin4-M)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">436308</id>
+ <code>NITMS</code>
+ <scientific_name>Nitrosopumilus maritimus (strain SCM1)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">2301</id>
+ <scientific_name>Thermoplasmatales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <name>a_59</name>
+ <taxonomy>
+ <id provider="uniprot">2302</id>
+ <scientific_name>Thermoplasma</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>THEAC</name>
+ <taxonomy>
+ <id provider="uniprot">273075</id>
+ <code>THEAC</code>
+ <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>THEVO</name>
+ <taxonomy>
+ <id provider="uniprot">273116</id>
+ <code>THEVO</code>
+ <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>PICTO</name>
+ <taxonomy>
+ <id provider="uniprot">263820</id>
+ <code>PICTO</code>
+ <scientific_name>Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>a_93</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">183924</id>
+ <scientific_name>Thermoprotei</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <name>a_83</name>
+ <clade>
+ <name>a_81</name>
+ <clade>
+ <name>a_73</name>
+ <taxonomy>
+ <id provider="uniprot">2267</id>
+ <scientific_name>Thermoproteaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>a_71</name>
+ <clade>
+ <name>a_67</name>
+ <taxonomy>
+ <id provider="uniprot">2276</id>
+ <scientific_name>Pyrobaculum</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>a_65</name>
+ <clade>
+ <name>PYRAR</name>
+ <taxonomy>
+ <id provider="uniprot">340102</id>
+ <code>PYRAR</code>
+ <scientific_name>Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>PYRCJ</name>
+ <taxonomy>
+ <id provider="uniprot">410359</id>
+ <code>PYRCJ</code>
+ <scientific_name>Pyrobaculum calidifontis (strain JCM 11548 / VA1)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>PYRAE</name>
+ <taxonomy>
+ <id provider="uniprot">13773</id>
+ <code>PYRAE</code>
+ <scientific_name>Pyrobaculum aerophilum</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>a_70</name>
+ <clade>
+ <name>PYRIL</name>
+ <taxonomy>
+ <id provider="uniprot">384616</id>
+ <code>PYRIL</code>
+ <scientific_name>Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>THENV</name>
+ <taxonomy>
+ <id provider="uniprot">444157</id>
+ <code>THENV</code>
+ <scientific_name>Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">397948</id>
+ <code>CALMQ</code>
+ <scientific_name>Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>a_80</name>
+ <taxonomy>
+ <id provider="uniprot">118883</id>
+ <scientific_name>Sulfolobaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>a_78</name>
+ <taxonomy>
+ <id provider="uniprot">2284</id>
+ <scientific_name>Sulfolobus</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>a_76</name>
+ <clade>
+ <name>SULAC</name>
+ <taxonomy>
+ <id provider="uniprot">2285</id>
+ <code>SULAC</code>
+ <scientific_name>Sulfolobus acidocaldarius</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>SULTO</name>
+ <taxonomy>
+ <id provider="uniprot">273063</id>
+ <code>SULTO</code>
+ <scientific_name>Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>SULSO</name>
+ <taxonomy>
+ <id provider="uniprot">2287</id>
+ <code>SULSO</code>
+ <scientific_name>Sulfolobus solfataricus</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>METS5</name>
+ <taxonomy>
+ <id provider="uniprot">399549</id>
+ <code>METS5</code>
+ <scientific_name>Metallosphaera sedula (strain ATCC 51363 / DSM 5348)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>AERPE</name>
+ <taxonomy>
+ <id provider="uniprot">56636</id>
+ <code>AERPE</code>
+ <scientific_name>Aeropyrum pernix</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>a_90</name>
+ <clade>
+ <name>a_88</name>
+ <clade>
+ <name>a_86</name>
+ <clade>
+ <name>STAMF</name>
+ <taxonomy>
+ <id provider="uniprot">399550</id>
+ <code>STAMF</code>
+ <scientific_name>Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>THEPD</name>
+ <taxonomy>
+ <id provider="uniprot">368408</id>
+ <code>THEPD</code>
+ <scientific_name>Thermofilum pendens (strain Hrk 5)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>HYPBU</name>
+ <taxonomy>
+ <id provider="uniprot">415426</id>
+ <code>HYPBU</code>
+ <scientific_name>Hyperthermus butylicus (strain DSM 5456 / JCM 9403)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>IGNH4</name>
+ <taxonomy>
+ <id provider="uniprot">453591</id>
+ <code>IGNH4</code>
+ <scientific_name>Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">374847</id>
+ <code>KORCO</code>
+ <scientific_name>Korarchaeum cryptofilum (strain OPF8)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">2</id>
+ <scientific_name>Bacteria</scientific_name>
+ <rank>superkingdom</rank>
+ </taxonomy>
+ <clade>
+ <name>b_278</name>
+ <clade>
+ <name>b_268</name>
+ <clade>
+ <name>b_226</name>
+ <clade>
+ <name>b_200</name>
+ <clade>
+ <name>b_194</name>
+ <clade>
+ <name>b_104</name>
+ <clade>
+ <name>b_80</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">1224</id>
+ <scientific_name>Proteobacteria</scientific_name>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <name>b_52</name>
+ <clade>
+ <name>b_44</name>
+ <clade>
+ <name>b_30</name>
+ <clade>
+ <name>b_24</name>
+ <taxonomy>
+ <id provider="uniprot">1236</id>
+ <scientific_name>Gammaproteobacteria</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <name>b_16</name>
+ <clade>
+ <name>b_10</name>
+ <taxonomy>
+ <id provider="uniprot">543</id>
+ <scientific_name>Enterobacteriaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>b_8</name>
+ <clade>
+ <name>b_6</name>
+ <clade>
+ <name>b_4</name>
+ <clade>
+ <name>b_2</name>
+ <taxonomy>
+ <id provider="uniprot">561</id>
+ <scientific_name>Escherichia</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>ECOLI</name>
+ <taxonomy>
+ <id provider="uniprot">83333</id>
+ <code>ECOLI</code>
+ <scientific_name>Escherichia coli (strain K12)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>ECO57</name>
+ <taxonomy>
+ <id provider="uniprot">83334</id>
+ <code>ECO57</code>
+ <scientific_name>Escherichia coli O157:H7</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>SHIFL</name>
+ <taxonomy>
+ <id provider="uniprot">623</id>
+ <code>SHIFL</code>
+ <scientific_name>Shigella flexneri</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>SALTY</name>
+ <taxonomy>
+ <id provider="uniprot">90371</id>
+ <code>SALTY</code>
+ <scientific_name>Salmonella typhimurium</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>YERPE</name>
+ <taxonomy>
+ <id provider="uniprot">632</id>
+ <code>YERPE</code>
+ <scientific_name>Yersinia pestis</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>PHOLU</name>
+ <taxonomy>
+ <id provider="uniprot">29488</id>
+ <code>PHOLU</code>
+ <scientific_name>Photorhabdus luminescens</scientific_name>
+ <synonym>Xenorhabdus luminescens</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_15</name>
+ <clade>
+ <name>b_13</name>
+ <taxonomy>
+ <id provider="uniprot">641</id>
+ <scientific_name>Vibrionaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>PHOPR</name>
+ <taxonomy>
+ <id provider="uniprot">74109</id>
+ <code>PHOPR</code>
+ <scientific_name>Photobacterium profundum</scientific_name>
+ <synonym>Photobacterium sp. (strain SS9)</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>VIBCH</name>
+ <taxonomy>
+ <id provider="uniprot">666</id>
+ <code>VIBCH</code>
+ <scientific_name>Vibrio cholerae</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>SHEDO</name>
+ <taxonomy>
+ <id provider="uniprot">318161</id>
+ <code>SHEDO</code>
+ <scientific_name>Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_23</name>
+ <clade>
+ <name>b_21</name>
+ <taxonomy>
+ <id provider="uniprot">286</id>
+ <scientific_name>Pseudomonas</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>b_19</name>
+ <clade>
+ <name>PSEF5</name>
+ <taxonomy>
+ <id provider="uniprot">220664</id>
+ <code>PSEF5</code>
+ <scientific_name>Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>PSEPF</name>
+ <taxonomy>
+ <id provider="uniprot">205922</id>
+ <code>PSEPF</code>
+ <scientific_name>Pseudomonas fluorescens (strain Pf0-1)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>PSEAE</name>
+ <taxonomy>
+ <id provider="uniprot">287</id>
+ <code>PSEAE</code>
+ <scientific_name>Pseudomonas aeruginosa</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>CHRSD</name>
+ <taxonomy>
+ <id provider="uniprot">290398</id>
+ <code>CHRSD</code>
+ <scientific_name>Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_29</name>
+ <taxonomy>
+ <id provider="uniprot">28216</id>
+ <scientific_name>Betaproteobacteria</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <name>DECAR</name>
+ <taxonomy>
+ <id provider="uniprot">159087</id>
+ <code>DECAR</code>
+ <scientific_name>Dechloromonas aromatica (strain RCB)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>RALME</name>
+ <taxonomy>
+ <id provider="uniprot">266264</id>
+ <code>RALME</code>
+ <scientific_name>Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_43</name>
+ <clade>
+ <name>b_41</name>
+ <clade>
+ <name>b_35</name>
+ <taxonomy>
+ <id provider="uniprot">28216</id>
+ <scientific_name>Betaproteobacteria</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <name>b_33</name>
+ <taxonomy>
+ <id provider="uniprot">206379</id>
+ <scientific_name>Nitrosomonadaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>NITEU</name>
+ <taxonomy>
+ <id provider="uniprot">915</id>
+ <code>NITEU</code>
+ <scientific_name>Nitrosomonas europaea</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>NITMU</name>
+ <taxonomy>
+ <id provider="uniprot">323848</id>
+ <code>NITMU</code>
+ <scientific_name>Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>THIDE</name>
+ <taxonomy>
+ <id provider="uniprot">36861</id>
+ <code>THIDE</code>
+ <scientific_name>Thiobacillus denitrificans</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_40</name>
+ <taxonomy>
+ <id provider="uniprot">135613</id>
+ <scientific_name>Chromatiales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <name>b_38</name>
+ <taxonomy>
+ <id provider="uniprot">72276</id>
+ <scientific_name>Ectothiorhodospiraceae</scientific_name>
+ <common_name>purple sulfur bacteria</common_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>ALHEH</name>
+ <taxonomy>
+ <id provider="uniprot">187272</id>
+ <code>ALHEH</code>
+ <scientific_name>Alkalilimnicola ehrlichei (strain MLHE-1)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>HALHL</name>
+ <taxonomy>
+ <id provider="uniprot">349124</id>
+ <code>HALHL</code>
+ <scientific_name>Halorhodospira halophila (strain DSM 244 / SL1)</scientific_name>
+ <synonym>Ectothiorhodospira halophila (strain DSM 244 / SL1)</synonym>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>NITOC</name>
+ <taxonomy>
+ <id provider="uniprot">323261</id>
+ <code>NITOC</code>
+ <scientific_name>Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>THICR</name>
+ <taxonomy>
+ <id provider="uniprot">317025</id>
+ <code>THICR</code>
+ <scientific_name>Thiomicrospira crunogena (strain XCL-2)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_51</name>
+ <taxonomy>
+ <id provider="uniprot">1236</id>
+ <scientific_name>Gammaproteobacteria</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <name>b_47</name>
+ <clade>
+ <name>IDILO</name>
+ <taxonomy>
+ <id provider="uniprot">135577</id>
+ <code>IDILO</code>
+ <scientific_name>Idiomarina loihiensis</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>LEGPN</name>
+ <taxonomy>
+ <id provider="uniprot">446</id>
+ <code>LEGPN</code>
+ <scientific_name>Legionella pneumophila</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_50</name>
+ <taxonomy>
+ <id provider="uniprot">32033</id>
+ <scientific_name>Xanthomonadaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>XANAC</name>
+ <taxonomy>
+ <id provider="uniprot">92829</id>
+ <code>XANAC</code>
+ <scientific_name>Xanthomonas axonopodis pv. citri</scientific_name>
+ <common_name>Citrus canker</common_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>XYLFT</name>
+ <taxonomy>
+ <id provider="uniprot">183190</id>
+ <code>XYLFT</code>
+ <scientific_name>Xylella fastidiosa (strain Temecula1 / ATCC 700964)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_71</name>
+ <taxonomy>
+ <id provider="uniprot">28211</id>
+ <scientific_name>Alphaproteobacteria</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <name>b_67</name>
+ <clade>
+ <name>b_65</name>
+ <clade>
+ <name>b_61</name>
+ <taxonomy>
+ <id provider="uniprot">356</id>
+ <scientific_name>Rhizobiales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <name>b_57</name>
+ <taxonomy>
+ <id provider="uniprot">227290</id>
+ <scientific_name>Rhizobium/Agrobacterium group</scientific_name>
+ </taxonomy>
+ <clade>
+ <name>AGRT5</name>
+ <taxonomy>
+ <id provider="uniprot">176299</id>
+ <code>AGRT5</code>
+ <scientific_name>Agrobacterium tumefaciens (strain C58 / ATCC 33970)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>RHIEC</name>
+ <taxonomy>
+ <id provider="uniprot">347834</id>
+ <code>RHIEC</code>
+ <scientific_name>Rhizobium etli (strain CFN 42 / ATCC 51251)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_60</name>
+ <taxonomy>
+ <id provider="uniprot">41294</id>
+ <scientific_name>Bradyrhizobiaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>BRAJA</name>
+ <taxonomy>
+ <id provider="uniprot">375</id>
+ <code>BRAJA</code>
+ <scientific_name>Bradyrhizobium japonicum</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>RHOPT</name>
+ <taxonomy>
+ <id provider="uniprot">395960</id>
+ <code>RHOPT</code>
+ <scientific_name>Rhodopseudomonas palustris (strain TIE-1)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_64</name>
+ <taxonomy>
+ <id provider="uniprot">31989</id>
+ <scientific_name>Rhodobacteraceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>RHOS1</name>
+ <taxonomy>
+ <id provider="uniprot">349101</id>
+ <code>RHOS1</code>
+ <scientific_name>Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>ROSDO</name>
+ <taxonomy>
+ <id provider="uniprot">375451</id>
+ <code>ROSDO</code>
+ <scientific_name>Roseobacter denitrificans (strain ATCC 33942 / OCh 114)</scientific_name>
+ <common_name>Erythrobacter sp. (strain OCh 114)</common_name>
+ <synonym>Roseobacter denitrificans</synonym>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>CAUCR</name>
+ <taxonomy>
+ <id provider="uniprot">155892</id>
+ <code>CAUCR</code>
+ <scientific_name>Caulobacter crescentus</scientific_name>
+ <synonym>Caulobacter vibrioides</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_70</name>
+ <taxonomy>
+ <id provider="uniprot">204441</id>
+ <scientific_name>Rhodospirillales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <name>ACICY</name>
+ <taxonomy>
+ <id provider="uniprot">524</id>
+ <code>ACICY</code>
+ <scientific_name>Acidiphilium cryptum</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>RHORU</name>
+ <taxonomy>
+ <id provider="uniprot">1085</id>
+ <code>RHORU</code>
+ <scientific_name>Rhodospirillum rubrum</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_79</name>
+ <clade>
+ <name>b_77</name>
+ <taxonomy>
+ <id provider="uniprot">1224</id>
+ <scientific_name>Proteobacteria</scientific_name>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <name>b_75</name>
+ <taxonomy>
+ <id provider="uniprot">712</id>
+ <scientific_name>Pasteurellaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>HAEIN</name>
+ <taxonomy>
+ <id provider="uniprot">727</id>
+ <code>HAEIN</code>
+ <scientific_name>Haemophilus influenzae</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>PASMU</name>
+ <taxonomy>
+ <id provider="uniprot">747</id>
+ <code>PASMU</code>
+ <scientific_name>Pasteurella multocida</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>NEIME</name>
+ <taxonomy>
+ <id provider="uniprot">487</id>
+ <code>NEIME</code>
+ <scientific_name>Neisseria meningitidis</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>ACIFE</name>
+ <taxonomy>
+ <id provider="uniprot">905</id>
+ <code>ACIFE</code>
+ <scientific_name>Acidaminococcus fermentans</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_103</name>
+ <clade>
+ <name>b_91</name>
+ <taxonomy>
+ <id provider="uniprot">28221</id>
+ <scientific_name>Deltaproteobacteria</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <name>b_87</name>
+ <clade>
+ <name>b_83</name>
+ <clade>
+ <name>DESPS</name>
+ <taxonomy>
+ <id provider="uniprot">84980</id>
+ <code>DESPS</code>
+ <scientific_name>Desulfotalea psychrophila</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>DESDE</name>
+ <taxonomy>
+ <id provider="uniprot">876</id>
+ <code>DESDE</code>
+ <scientific_name>Desulfovibrio desulfuricans</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>SYNAS</name>
+ <taxonomy>
+ <id provider="uniprot">56780</id>
+ <code>SYNAS</code>
+ <scientific_name>Syntrophus aciditrophicus (strain SB)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_90</name>
+ <taxonomy>
+ <id provider="uniprot">28231</id>
+ <scientific_name>Geobacter</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>GEOME</name>
+ <taxonomy>
+ <id provider="uniprot">28232</id>
+ <code>GEOME</code>
+ <scientific_name>Geobacter metallireducens</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>GEOSL</name>
+ <taxonomy>
+ <id provider="uniprot">35554</id>
+ <code>GEOSL</code>
+ <scientific_name>Geobacter sulfurreducens</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_102</name>
+ <clade>
+ <name>b_98</name>
+ <clade>
+ <name>b_94</name>
+ <taxonomy>
+ <id provider="uniprot">31</id>
+ <scientific_name>Myxococcaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>ANADE</name>
+ <taxonomy>
+ <id provider="uniprot">290397</id>
+ <code>ANADE</code>
+ <scientific_name>Anaeromyxobacter dehalogenans (strain 2CP-C)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>MYXXA</name>
+ <taxonomy>
+ <id provider="uniprot">34</id>
+ <code>MYXXA</code>
+ <scientific_name>Myxococcus xanthus</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_97</name>
+ <taxonomy>
+ <id provider="uniprot">57723</id>
+ <scientific_name>Acidobacteria</scientific_name>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <name>ACIBL</name>
+ <taxonomy>
+ <id provider="uniprot">204669</id>
+ <code>ACIBL</code>
+ <scientific_name>Acidobacteria bacterium (strain Ellin345)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>SOLUS</name>
+ <taxonomy>
+ <id provider="uniprot">332163</id>
+ <code>SOLUS</code>
+ <scientific_name>Solibacter usitatus</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>RHOBA</name>
+ <taxonomy>
+ <id provider="uniprot">265606</id>
+ <code>RHOBA</code>
+ <scientific_name>Rhodopirellula baltica</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_193</name>
+ <clade>
+ <name>b_163</name>
+ <clade>
+ <name>b_133</name>
+ <clade>
+ <name>Chloroflexi & Actinobacteria</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">200795</id>
+ <scientific_name>Chloroflexi</scientific_name>
+ <common_name>GNS bacteria</common_name>
+ <synonym>Thermomicrobia</synonym>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">32061</id>
+ <scientific_name>Chloroflexi (class)</scientific_name>
+ <synonym>Chloroflecales</synonym>
+ <synonym>Chloroflexus/Deinococcus group</synonym>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <name>b_122</name>
+ <taxonomy>
+ <id provider="uniprot">1106</id>
+ <scientific_name>Chloroflexaceae</scientific_name>
+ <common_name>filamentous anoxygenic phototrophic bacteria</common_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>CHLAU</name>
+ <taxonomy>
+ <id provider="uniprot">1108</id>
+ <code>CHLAU</code>
+ <scientific_name>Chloroflexus aurantiacus</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">383372</id>
+ <code>ROSCS</code>
+ <scientific_name>Roseiflexus castenholzii (strain DSM 13941 / HLO8)</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>HERAU</name>
+ <taxonomy>
+ <id provider="uniprot">65</id>
+ <code>HERAU</code>
+ <scientific_name>Herpetosiphon aurantiacus</scientific_name>
+ <synonym>Herpetosiphon giganteus</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">479434</id>
+ <code>SPHTD</code>
+ <scientific_name>Sphaerobacter thermophilus (strain DSM 20745 / S 6022)</scientific_name>
+ <rank>strain</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">201174</id>
+ <scientific_name>Actinobacteria</scientific_name>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">2037</id>
+ <scientific_name>Actinomycetales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <name>b_115</name>
+ <clade>
+ <name>KINRD</name>
+ <taxonomy>
+ <id provider="uniprot">266940</id>
+ <code>KINRD</code>
+ <scientific_name>Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>KOCRD</name>
+ <taxonomy>
+ <id provider="uniprot">378753</id>
+ <code>KOCRD</code>
+ <scientific_name>Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>STRCO</name>
+ <taxonomy>
+ <id provider="uniprot">1902</id>
+ <code>STRCO</code>
+ <scientific_name>Streptomyces coelicolor</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>THEFY</name>
+ <taxonomy>
+ <id provider="uniprot">269800</id>
+ <code>THEFY</code>
+ <scientific_name>Thermobifida fusca (strain YX)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">1032480</id>
+ <code>MICPN</code>
+ <scientific_name>Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1)</scientific_name>
+ <common_name>Microlunatus phosphovorus NM-1</common_name>
+ <rank>strain</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">85007</id>
+ <scientific_name>Corynebacterineae</scientific_name>
+ <rank>suborder</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">1763</id>
+ <scientific_name>Mycobacterium</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>MYCLE</name>
+ <taxonomy>
+ <id provider="uniprot">1769</id>
+ <code>MYCLE</code>
+ <scientific_name>Mycobacterium leprae</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>MYCTU</name>
+ <taxonomy>
+ <id provider="uniprot">1773</id>
+ <code>MYCTU</code>
+ <scientific_name>Mycobacterium tuberculosis</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>CORJK</name>
+ <taxonomy>
+ <id provider="uniprot">306537</id>
+ <code>CORJK</code>
+ <scientific_name>Corynebacterium jeikeium (strain K411)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">632772</id>
+ <code>RHOOB</code>
+ <scientific_name>Rhodococcus opacus (strain B4)</scientific_name>
+ <rank>strain</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>RUBXD</name>
+ <taxonomy>
+ <id provider="uniprot">266117</id>
+ <code>RUBXD</code>
+ <scientific_name>Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_132</name>
+ <taxonomy>
+ <id provider="uniprot">188787</id>
+ <scientific_name>Deinococci</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <name>b_130</name>
+ <taxonomy>
+ <id provider="uniprot">1298</id>
+ <scientific_name>Deinococcus</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>DEIGD</name>
+ <taxonomy>
+ <id provider="uniprot">319795</id>
+ <code>DEIGD</code>
+ <scientific_name>Deinococcus geothermalis (strain DSM 11300)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>DEIRA</name>
+ <taxonomy>
+ <id provider="uniprot">1299</id>
+ <code>DEIRA</code>
+ <scientific_name>Deinococcus radiodurans</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>THETH</name>
+ <taxonomy>
+ <id provider="uniprot">274</id>
+ <code>THETH</code>
+ <scientific_name>Thermus thermophilus</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_162</name>
+ <taxonomy>
+ <id provider="uniprot">1117</id>
+ <scientific_name>Cyanobacteria</scientific_name>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <name>b_154</name>
+ <clade>
+ <name>b_152</name>
+ <clade>
+ <name>b_146</name>
+ <clade>
+ <name>b_144</name>
+ <clade>
+ <name>b_142</name>
+ <clade>
+ <name>b_138</name>
+ <taxonomy>
+ <id provider="uniprot">1162</id>
+ <scientific_name>Nostocaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>b_136</name>
+ <clade>
+ <name>ANAVA</name>
+ <taxonomy>
+ <id provider="uniprot">1172</id>
+ <code>ANAVA</code>
+ <scientific_name>Anabaena variabilis</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>NOSS7</name>
+ <taxonomy>
+ <id provider="uniprot">28072</id>
+ <code>NOSS7</code>
+ <scientific_name>Nostoc sp. (strain PCC 7524)</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>NOSP7</name>
+ <taxonomy>
+ <id provider="uniprot">63737</id>
+ <code>NOSP7</code>
+ <scientific_name>Nostoc punctiforme (strain ATCC 29133 / PCC 73102)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>ACAMR</name>
+ <taxonomy>
+ <id provider="uniprot">155978</id>
+ <code>ACAMR</code>
+ <scientific_name>Acaryochloris marina</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>MICAN</name>
+ <taxonomy>
+ <id provider="uniprot">449447</id>
+ <code>MICAN</code>
+ <scientific_name>Microcystis aeruginosa (strain NIES-843)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>TRIER</name>
+ <taxonomy>
+ <id provider="uniprot">1206</id>
+ <code>TRIER</code>
+ <scientific_name>Trichodesmium erythraeum</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_149</name>
+ <taxonomy>
+ <id provider="uniprot">1118</id>
+ <scientific_name>Chroococcales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <name>SYNEL</name>
+ <taxonomy>
+ <id provider="uniprot">32046</id>
+ <code>SYNEL</code>
+ <scientific_name>Synechococcus elongatus</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>SYNY3</name>
+ <taxonomy>
+ <id provider="uniprot">1148</id>
+ <code>SYNY3</code>
+ <scientific_name>Synechocystis sp. (strain PCC 6803)</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>GLOVI</name>
+ <taxonomy>
+ <id provider="uniprot">33072</id>
+ <code>GLOVI</code>
+ <scientific_name>Gloeobacter violaceus</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_161</name>
+ <clade>
+ <name>b_159</name>
+ <taxonomy>
+ <id provider="uniprot">1218</id>
+ <scientific_name>Prochlorococcus</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>b_157</name>
+ <clade>
+ <name>PROMA</name>
+ <taxonomy>
+ <id provider="uniprot">1219</id>
+ <code>PROMA</code>
+ <scientific_name>Prochlorococcus marinus</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>PROMP</name>
+ <taxonomy>
+ <id provider="uniprot">59919</id>
+ <code>PROMP</code>
+ <scientific_name>Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>PROMM</name>
+ <taxonomy>
+ <id provider="uniprot">74547</id>
+ <code>PROMM</code>
+ <scientific_name>Prochlorococcus marinus (strain MIT 9313)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>SYNS3</name>
+ <taxonomy>
+ <id provider="uniprot">64471</id>
+ <code>SYNS3</code>
+ <scientific_name>Synechococcus sp. (strain CC9311)</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_192</name>
+ <clade>
+ <name>b_190</name>
+ <clade>
+ <name>b_178</name>
+ <clade>
+ <name>b_176</name>
+ <taxonomy>
+ <id provider="uniprot">191412</id>
+ <scientific_name>Chlorobiaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>b_170</name>
+ <clade>
+ <name>b_166</name>
+ <clade>
+ <name>CHLPB</name>
+ <taxonomy>
+ <id provider="uniprot">331678</id>
+ <code>CHLPB</code>
+ <scientific_name>Chlorobium phaeobacteroides (strain BS1)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>PROAE</name>
+ <taxonomy>
+ <id provider="uniprot">1102</id>
+ <code>PROAE</code>
+ <scientific_name>Prosthecochloris aestuarii</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_169</name>
+ <taxonomy>
+ <id provider="uniprot">274493</id>
+ <scientific_name>Chlorobium/Pelodictyon group</scientific_name>
+ </taxonomy>
+ <clade>
+ <name>PELLU</name>
+ <taxonomy>
+ <id provider="uniprot">1100</id>
+ <code>PELLU</code>
+ <scientific_name>Pelodictyon luteolum</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>PROVI</name>
+ <taxonomy>
+ <id provider="uniprot">290318</id>
+ <code>PROVI</code>
+ <scientific_name>Prosthecochloris vibrioformis (strain DSM 265)</scientific_name>
+ <common_name>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)</common_name>
+ <synonym>Chlorobium phaeovibrioides (strain DSM 265)</synonym>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_175</name>
+ <clade>
+ <name>b_173</name>
+ <taxonomy>
+ <id provider="uniprot">256319</id>
+ <scientific_name>Chlorobaculum</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>CHLP8</name>
+ <taxonomy>
+ <id provider="uniprot">517417</id>
+ <code>CHLP8</code>
+ <scientific_name>Chlorobaculum parvum (strain NCIB 8327)</scientific_name>
+ <synonym>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327)</synonym>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>CHLTE</name>
+ <taxonomy>
+ <id provider="uniprot">1097</id>
+ <code>CHLTE</code>
+ <scientific_name>Chlorobium tepidum</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>CHLCH</name>
+ <taxonomy>
+ <id provider="uniprot">340177</id>
+ <code>CHLCH</code>
+ <scientific_name>Chlorobium chlorochromatii (strain CaD3)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>CHLTA</name>
+ <taxonomy>
+ <id provider="uniprot">315277</id>
+ <code>CHLTA</code>
+ <scientific_name>Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_189</name>
+ <taxonomy>
+ <id provider="uniprot">976</id>
+ <scientific_name>Bacteroidetes</scientific_name>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <name>b_183</name>
+ <clade>
+ <name>b_181</name>
+ <taxonomy>
+ <id provider="uniprot">49546</id>
+ <scientific_name>Flavobacteriaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>FLAJO</name>
+ <taxonomy>
+ <id provider="uniprot">986</id>
+ <code>FLAJO</code>
+ <scientific_name>Flavobacterium johnsoniae</scientific_name>
+ <synonym>Cytophaga johnsonae</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>GRAFK</name>
+ <taxonomy>
+ <id provider="uniprot">411154</id>
+ <code>GRAFK</code>
+ <scientific_name>Gramella forsetii (strain KT0803)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>CYTH3</name>
+ <taxonomy>
+ <id provider="uniprot">269798</id>
+ <code>CYTH3</code>
+ <scientific_name>Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_188</name>
+ <taxonomy>
+ <id provider="uniprot">171549</id>
+ <scientific_name>Bacteroidales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <name>b_186</name>
+ <taxonomy>
+ <id provider="uniprot">816</id>
+ <scientific_name>Bacteroides</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>BACFR</name>
+ <taxonomy>
+ <id provider="uniprot">817</id>
+ <code>BACFR</code>
+ <scientific_name>Bacteroides fragilis</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>BACTN</name>
+ <taxonomy>
+ <id provider="uniprot">818</id>
+ <code>BACTN</code>
+ <scientific_name>Bacteroides thetaiotaomicron</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>PORGI</name>
+ <taxonomy>
+ <id provider="uniprot">837</id>
+ <code>PORGI</code>
+ <scientific_name>Porphyromonas gingivalis</scientific_name>
+ <synonym>Bacteroides gingivalis</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>SALRD</name>
+ <taxonomy>
+ <id provider="uniprot">309807</id>
+ <code>SALRD</code>
+ <scientific_name>Salinibacter ruber (strain DSM 13855 / M31)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_199</name>
+ <clade>
+ <name>b_197</name>
+ <taxonomy>
+ <scientific_name>Verrucomicrobia</scientific_name>
+ </taxonomy>
+ <clade>
+ <name>AKKM8</name>
+ <taxonomy>
+ <id provider="uniprot">349741</id>
+ <code>AKKM8</code>
+ <scientific_name>Akkermansia muciniphila (strain ATCC BAA-835)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>METI4</name>
+ <taxonomy>
+ <id provider="uniprot">481448</id>
+ <code>METI4</code>
+ <scientific_name>Methylacidiphilum infernorum (isolate V4)</scientific_name>
+ <synonym>Methylokorus infernorum (strain V4)</synonym>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>LEPIC</name>
+ <taxonomy>
+ <id provider="uniprot">44275</id>
+ <code>LEPIC</code>
+ <scientific_name>Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_225</name>
+ <clade>
+ <name>b_219</name>
+ <taxonomy>
+ <id provider="uniprot">1239</id>
+ <scientific_name>Firmicutes</scientific_name>
+ <rank>phylum</rank>
+ </taxonomy>
+ <clade>
+ <name>b_213</name>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">1385</id>
+ <scientific_name>Bacillales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">186817</id>
+ <scientific_name>Bacillaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">1386</id>
+ <scientific_name>Bacillus</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">86661</id>
+ <scientific_name>Bacillus cereus group</scientific_name>
+ </taxonomy>
+ <clade>
+ <name>BACAN</name>
+ <taxonomy>
+ <id provider="uniprot">1392</id>
+ <code>BACAN</code>
+ <scientific_name>Bacillus anthracis</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">572264</id>
+ <code>BACC3</code>
+ <scientific_name>Bacillus cereus (strain 03BB102)</scientific_name>
+ <rank>strain</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">1423</id>
+ <code>BACSU</code>
+ <scientific_name>Bacillus subtilis</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_206</name>
+ <clade>
+ <name>BACHD</name>
+ <taxonomy>
+ <id provider="uniprot">86665</id>
+ <code>BACHD</code>
+ <scientific_name>Bacillus halodurans</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>GEOKA</name>
+ <taxonomy>
+ <id provider="uniprot">1462</id>
+ <code>GEOKA</code>
+ <scientific_name>Geobacillus kaustophilus</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_210</name>
+ <clade>
+ <name>LISMO</name>
+ <taxonomy>
+ <id provider="uniprot">1639</id>
+ <code>LISMO</code>
+ <scientific_name>Listeria monocytogenes</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>STAAU</name>
+ <taxonomy>
+ <id provider="uniprot">1280</id>
+ <code>STAAU</code>
+ <scientific_name>Staphylococcus aureus</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>CLOP1</name>
+ <taxonomy>
+ <id provider="uniprot">195103</id>
+ <code>CLOP1</code>
+ <scientific_name>Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>Clostridia</name>
+ <taxonomy>
+ <id provider="uniprot">186801</id>
+ <scientific_name>Clostridia</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <name>b_218</name>
+ <clade>
+ <name>b_216</name>
+ <taxonomy>
+ <id provider="uniprot">186814</id>
+ <scientific_name>Thermoanaerobacteriaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>CARHZ</name>
+ <taxonomy>
+ <id provider="uniprot">246194</id>
+ <code>CARHZ</code>
+ <scientific_name>Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>THETN</name>
+ <taxonomy>
+ <id provider="uniprot">119072</id>
+ <code>THETN</code>
+ <scientific_name>Thermoanaerobacter tengcongensis</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>DESHA</name>
+ <taxonomy>
+ <id provider="uniprot">49338</id>
+ <code>DESHA</code>
+ <scientific_name>Desulfitobacterium hafniense</scientific_name>
+ <synonym>Desulfitobacterium frappieri</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>EUBR3</name>
+ <taxonomy>
+ <id provider="uniprot">515619</id>
+ <code>EUBR3</code>
+ <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_224</name>
+ <taxonomy>
+ <id provider="uniprot">188709</id>
+ <scientific_name>Thermotogaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>b_222</name>
+ <clade>
+ <name>FERNB</name>
+ <taxonomy>
+ <id provider="uniprot">381764</id>
+ <code>FERNB</code>
+ <scientific_name>Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>THELT</name>
+ <taxonomy>
+ <id provider="uniprot">416591</id>
+ <code>THELT</code>
+ <scientific_name>Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>THEMA</name>
+ <taxonomy>
+ <id provider="uniprot">2336</id>
+ <code>THEMA</code>
+ <scientific_name>Thermotoga maritima</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_267</name>
+ <clade>
+ <name>b_263</name>
+ <clade>
+ <name>b_251</name>
+ <clade>
+ <name>b_249</name>
+ <clade>
+ <name>b_245</name>
+ <clade>
+ <name>b_237</name>
+ <clade>
+ <name>b_233</name>
+ <taxonomy>
+ <id provider="uniprot">31969</id>
+ <scientific_name>Mollicutes</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <name>b_231</name>
+ <clade>
+ <name>b_229</name>
+ <taxonomy>
+ <scientific_name>Mycoplasma</scientific_name>
+ </taxonomy>
+ <clade>
+ <name>MYCGE</name>
+ <taxonomy>
+ <id provider="uniprot">2097</id>
+ <code>MYCGE</code>
+ <scientific_name>Mycoplasma genitalium</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>MYCPN</name>
+ <taxonomy>
+ <id provider="uniprot">2104</id>
+ <code>MYCPN</code>
+ <scientific_name>Mycoplasma pneumoniae</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>MESFL</name>
+ <taxonomy>
+ <id provider="uniprot">2151</id>
+ <code>MESFL</code>
+ <scientific_name>Mesoplasma florum</scientific_name>
+ <synonym>Acholeplasma florum</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>UREPA</name>
+ <taxonomy>
+ <id provider="uniprot">134821</id>
+ <code>UREPA</code>
+ <scientific_name>Ureaplasma parvum</scientific_name>
+ <synonym>Ureaplasma urealyticum biotype 1</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_236</name>
+ <taxonomy>
+ <id provider="uniprot">137</id>
+ <scientific_name>Spirochaetaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>BORBU</name>
+ <taxonomy>
+ <id provider="uniprot">139</id>
+ <code>BORBU</code>
+ <scientific_name>Borrelia burgdorferi</scientific_name>
+ <common_name>Lyme disease spirochete</common_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>TREPA</name>
+ <taxonomy>
+ <id provider="uniprot">160</id>
+ <code>TREPA</code>
+ <scientific_name>Treponema pallidum</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_244</name>
+ <clade>
+ <name>b_242</name>
+ <taxonomy>
+ <id provider="uniprot">1113537</id>
+ <scientific_name>Chlamydia/Chlamydophila group</scientific_name>
+ </taxonomy>
+ <clade>
+ <name>b_240</name>
+ <clade>
+ <name>CHLPN</name>
+ <taxonomy>
+ <id provider="uniprot">83558</id>
+ <code>CHLPN</code>
+ <scientific_name>Chlamydia pneumoniae</scientific_name>
+ <synonym>Chlamydophila pneumoniae</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>CHLFF</name>
+ <taxonomy>
+ <id provider="uniprot">264202</id>
+ <code>CHLFF</code>
+ <scientific_name>Chlamydophila felis (strain Fe/C-56)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>CHLMU</name>
+ <taxonomy>
+ <id provider="uniprot">83560</id>
+ <code>CHLMU</code>
+ <scientific_name>Chlamydia muridarum</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>RICTY</name>
+ <taxonomy>
+ <id provider="uniprot">785</id>
+ <code>RICTY</code>
+ <scientific_name>Rickettsia typhi</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">28211</id>
+ <scientific_name>Alphaproteobacteria</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">38323</id>
+ <code>BARHE</code>
+ <scientific_name>Bartonella henselae</scientific_name>
+ <synonym>Rochalimaea henselae</synonym>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">198252</id>
+ <code>PELUB</code>
+ <scientific_name>Pelagibacter ubique</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">780</id>
+ <scientific_name>Rickettsia</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">452659</id>
+ <code>RICRO</code>
+ <scientific_name>Rickettsia rickettsii (strain Iowa)</scientific_name>
+ <rank>strain</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <taxonomy>
+ <id provider="uniprot">391896</id>
+ <code>RICB8</code>
+ <scientific_name>Rickettsia bellii (strain OSU 85-389)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>FRATU</name>
+ <taxonomy>
+ <id provider="uniprot">263</id>
+ <code>FRATU</code>
+ <scientific_name>Francisella tularensis</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_262</name>
+ <clade>
+ <name>b_260</name>
+ <clade>
+ <name>b_258</name>
+ <taxonomy>
+ <id provider="uniprot">186826</id>
+ <scientific_name>Lactobacillales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <name>b_256</name>
+ <taxonomy>
+ <id provider="uniprot">1300</id>
+ <scientific_name>Streptococcaceae</scientific_name>
+ <rank>family</rank>
+ </taxonomy>
+ <clade>
+ <name>b_254</name>
+ <taxonomy>
+ <id provider="uniprot">1301</id>
+ <scientific_name>Streptococcus</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>STRPN</name>
+ <taxonomy>
+ <id provider="uniprot">1313</id>
+ <code>STRPN</code>
+ <scientific_name>Streptococcus pneumoniae</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>STRPY</name>
+ <taxonomy>
+ <id provider="uniprot">1314</id>
+ <code>STRPY</code>
+ <scientific_name>Streptococcus pyogenes</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>LACLA</name>
+ <taxonomy>
+ <id provider="uniprot">1360</id>
+ <code>LACLA</code>
+ <scientific_name>Lactococcus lactis subsp. lactis</scientific_name>
+ <synonym>Streptococcus lactis</synonym>
+ <rank>subspecies</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>LACAC</name>
+ <taxonomy>
+ <id provider="uniprot">1579</id>
+ <code>LACAC</code>
+ <scientific_name>Lactobacillus acidophilus</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>BIFLO</name>
+ <taxonomy>
+ <id provider="uniprot">216816</id>
+ <code>BIFLO</code>
+ <scientific_name>Bifidobacterium longum</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>FUSNU</name>
+ <taxonomy>
+ <id provider="uniprot">851</id>
+ <code>FUSNU</code>
+ <scientific_name>Fusobacterium nucleatum</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_266</name>
+ <taxonomy>
+ <id provider="uniprot">61434</id>
+ <scientific_name>Dehalococcoides</scientific_name>
+ <rank>genus</rank>
+ </taxonomy>
+ <clade>
+ <name>DEHE1</name>
+ <taxonomy>
+ <id provider="uniprot">243164</id>
+ <code>DEHE1</code>
+ <scientific_name>Dehalococcoides ethenogenes (strain 195)</scientific_name>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>DEHSB</name>
+ <taxonomy>
+ <id provider="uniprot">216389</id>
+ <code>DEHSB</code>
+ <scientific_name>Dehalococcoides sp. (strain BAV1)</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_277</name>
+ <taxonomy>
+ <id provider="uniprot">29547</id>
+ <scientific_name>Epsilonproteobacteria</scientific_name>
+ <rank>class</rank>
+ </taxonomy>
+ <clade>
+ <name>b_273</name>
+ <clade>
+ <name>NITSB</name>
+ <taxonomy>
+ <id provider="uniprot">387092</id>
+ <code>NITSB</code>
+ <scientific_name>Nitratiruptor sp. (strain SB155-2)</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>SULNB</name>
+ <taxonomy>
+ <id provider="uniprot">387093</id>
+ <code>SULNB</code>
+ <scientific_name>Sulfurovum sp. (strain NBC37-1)</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ <clade>
+ <name>b_276</name>
+ <taxonomy>
+ <id provider="uniprot">213849</id>
+ <scientific_name>Campylobacterales</scientific_name>
+ <rank>order</rank>
+ </taxonomy>
+ <clade>
+ <name>CAMJE</name>
+ <taxonomy>
+ <id provider="uniprot">197</id>
+ <code>CAMJE</code>
+ <scientific_name>Campylobacter jejuni</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ <clade>
+ <name>HELPH</name>
+ <taxonomy>
+ <id provider="uniprot">357544</id>
+ <code>HELPH</code>
+ <scientific_name>Helicobacter pylori (strain HPAG1)</scientific_name>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+ </clade>
+ <clade>
+ <name>AQUAE</name>
+ <taxonomy>
+ <id provider="uniprot">63363</id>
+ <code>AQUAE</code>
+ <scientific_name>Aquifex aeolicus</scientific_name>
+ <rank>species</rank>
+ </taxonomy>
+ </clade>
+ </clade>
+ </clade>
+</phylogeny>
+</phyloxml>
\ No newline at end of file
git://source.jalview.org / jalview.git / commitdiff