more species added
authorcmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Mon, 21 Oct 2013 22:38:08 +0000 (22:38 +0000)
committercmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Mon, 21 Oct 2013 22:38:08 +0000 (22:38 +0000)
forester/data/tol_151.xml

index e28a3af..ecd1a55 100644 (file)
                 <scientific_name>Holomycota</scientific_name>\r
                 <synonym>Nucletmycea</synonym>\r
               </taxonomy>\r
+              <reference doi="10.1186/1471-2148-9-272">\r
+                <desc>Phylogenomic analyses predict sistergroup relationship of nucleariids and Fungi and paraphyly of zygomycetes with significant support</desc>\r
+              </reference>\r
               <clade>\r
                 <taxonomy>\r
                   <id provider="uniprot">4751</id>\r
                   </clade>\r
                   <clade>\r
                     <taxonomy>\r
-                      <id provider="uniprot">72359</id>\r
-                      <code>TRAHO</code>\r
-                      <scientific_name>Trachipleistophora hominis</scientific_name>\r
-                      <common_name>Microsporidian parasite</common_name>\r
-                      <rank>species</rank>\r
+                      <id provider="uniprot">35232</id>\r
+                      <scientific_name>Pleistophoridae</scientific_name>\r
+                      <rank>family</rank>\r
                     </taxonomy>\r
+                    <clade>\r
+                      <taxonomy>\r
+                        <id provider="uniprot">72359</id>\r
+                        <code>TRAHO</code>\r
+                        <scientific_name>Trachipleistophora hominis</scientific_name>\r
+                        <common_name>Microsporidian parasite</common_name>\r
+                        <rank>species</rank>\r
+                      </taxonomy>\r
+                    </clade>\r
+                    <clade>\r
+                      <taxonomy>\r
+                        <id provider="uniprot">948595</id>\r
+                        <code>VAVCU</code>\r
+                        <scientific_name>Vavraia culicis (isolate floridensis)</scientific_name>\r
+                        <common_name>Microsporidian parasite</common_name>\r
+                      </taxonomy>\r
+                    </clade>\r
                   </clade>\r
                   <clade>\r
                     <taxonomy>\r
                 </clade>\r
               </clade>\r
               <clade>\r
-                <name>Fonticula &amp; Nucleariidae</name>\r
+                <taxonomy>\r
+                  <id provider="uniprot">1001604</id>\r
+                  <scientific_name>Nucleariidae and Fonticula group</scientific_name>\r
+                </taxonomy>\r
                 <reference doi="10.1093/molbev/msp185">\r
+                  <desc>Phylogeny of the \93Forgotten\94 Cellular Slime Mold, Fonticula alba, Reveals a Key Evolutionary Branch within Opisthokonta</desc>\r
                 </reference>\r
                 <clade>\r
                   <taxonomy>\r
                     <id provider="uniprot">691883</id>\r
+                    <code>FALXX</code>\r
                     <scientific_name>Fonticula alba</scientific_name>\r
-                    <synonym>Fonticula alba Worley, Raper &amp; Hohl. 1979</synonym>\r
+                    <authority>Worley, Raper &amp; Hohl. 1979</authority>\r
                     <rank>species</rank>\r
+                    <uri>http://mbe.oxfordjournals.org/content/26/12/2699/F2.medium.gif</uri>\r
                   </taxonomy>\r
                 </clade>\r
                 <clade>\r