JAL-3858 javadoc and slightly revised green linear shading - still not a perfect...

diff --git a/src/jalview/renderer/ContactMapRenderer.java b/src/jalview/renderer/ContactMapRenderer.java
index 0471145..bec0f1e 100644 (file)
--- a/src/jalview/renderer/ContactMapRenderer.java
+++ b/src/jalview/renderer/ContactMapRenderer.java
@@ -49,6 +49,15 @@ public abstract class ContactMapRenderer implements AnnotationRowRendererI
      */
     Color selMinColor, selMaxColor;
 
+    /**
+     * 
+     * @param no_data - colour when no data available
+     * @param hidden - colour if this row is hidden
+     * @param maxColor - colour for maximum value of contact
+     * @param minColor - colour for minimum value of contact
+     * @param selMinColor - min colour if the contact has been selected
+     * @param selMaxColor - max colour if contact is selected
+     */
     public Shading(Color no_data, Color hidden, Color maxColor,
             Color minColor, Color selMinColor, Color selMaxColor)
     {
@@ -79,8 +88,8 @@ public abstract class ContactMapRenderer implements AnnotationRowRendererI
       {
         return new Shading(Color.pink, Color.red,
 
-                new Color(246, 252, 243), new Color(0, 60, 26),
-                new Color(26, 0, 60), new Color(243, 246, 252));
+                new Color(247, 252, 245), new Color(0, 68, 28),
+                new Color(28, 0, 68), new Color(245,247,252));
       }
     };
   }