setFont(new Font(fontName, style, Integer.parseInt(fontSize)), true);
- alignment
- .setGapCharacter(Cache.getDefault("GAP_SYMBOL", "-").charAt(0));
-
+ if (Cache.getDefault("NORMALISE_GAPS", true))
+ {
+ alignment.setGapCharacter(Cache.getDefault("GAP_SYMBOL", "-").charAt(
+ 0));
+ }
// We must set conservation and consensus before setting colour,
// as Blosum and Clustal require this to be done
if (hconsensus == null && !isDataset)
*
* @return DOCUMENT ME!
*/
+ @Override
public char getGapCharacter()
{
return getAlignment().getGapCharacter();
*
* @return DOCUMENT ME!
*/
+ @Override
public ColumnSelection getColumnSelection()
{
return colSel;
/**
* Send the current selection to be broadcast to any selection listeners.
*/
+ @Override
public void sendSelection()
{
jalview.structure.StructureSelectionManager
return seqvectors.toArray(new SequenceI[seqvectors.size()][]);
}
+ @Override
public boolean isNormaliseSequenceLogo()
{
return normaliseSequenceLogo;
*
* @return true if alignment characters should be displayed
*/
+ @Override
public boolean isValidCharWidth()
{
return validCharWidth;