Update overview in alignmentChanged

diff --git a/src/jalview/appletgui/APopupMenu.java b/src/jalview/appletgui/APopupMenu.java
index 68960f4..272d653 100755 (executable)
--- a/src/jalview/appletgui/APopupMenu.java
+++ b/src/jalview/appletgui/APopupMenu.java
@@ -319,6 +319,8 @@ public class APopupMenu
       }\r
         }\r
     ap.seqPanel.seqCanvas.repaint();\r
+    if(ap.overviewPanel!=null)\r
+      ap.overviewPanel.updateOverviewImage();\r
   }\r
 \r
   protected void clustalColour_actionPerformed(ActionEvent e)\r

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 5641846..ccf2bd2 100755 (executable)
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -656,6 +656,8 @@ public class AlignFrame
     viewport.updateConsensus();\r
     viewport.updateConservation ();\r
     resetAllColourSchemes();\r
+    if(alignPanel.overviewPanel!=null)\r
+      alignPanel.overviewPanel.updateOverviewImage();\r
     alignPanel.repaint();\r
   }\r
 \r

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index da4f93b..8e3dfc8 100755 (executable)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -1045,6 +1045,9 @@ public class AlignFrame
      viewport.updateConservation();\r
    }\r
    resetAllColourSchemes();\r
+   if(alignPanel.overviewPanel!=null)\r
+     alignPanel.overviewPanel.updateOverviewImage();\r
+\r
    alignPanel.repaint();\r
  }\r
 \r