if (f.exists())
{
try {
+ System.out.println("Reading file: "+f);
AppletFormatAdapter afa = new AppletFormatAdapter();
Runtime r = Runtime.getRuntime();
System.gc();
t1 +=System.currentTimeMillis();
System.gc();
memf += r.totalMemory()-r.freeMemory();
+ if (al!=null)
+ {
+ System.out.println("Alignment contains "+al.getHeight()+" sequences and "+al.getWidth()+" columns.");
+ } else {
+ System.out.println("Couldn't read alignment");
+ }
System.out.println("Read took "+(t1/1000.0)+" seconds.");
System.out.println("Difference between free memory now and before is "+(memf/(1024.0*1024.0)*1.0)+" MB");