--- /dev/null
+HMMER3/f [3.1 | February 2013]
+NAME MADE1
+ACC DF0000629.2
+DESC MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
+LENG 80
+MAXL 426
+ALPH DNA
+RF yes
+MM no
+CONS yes
+CS no
+MAP yes
+DATE Tue Feb 19 20:33:41 2013
+NSEQ 1997
+EFFN 3.911818
+CKSUM 3015610723
+GA 2.324 4.234
+TC 2.343 1.212
+NC 2.354 5.456
+STATS LOCAL MSV -8.5786 0.71858
+STATS LOCAL VITERBI -9.3632 0.71858
+STATS LOCAL FORWARD -3.4823 0.71858
+HMM A C G T
+ m->m m->i m->d i->m i->i d->m d->d
+ COMPO 1.24257 1.59430 1.62906 1.16413
+ 1.38629 1.38629 1.38629 1.38629
+ 0.03960 3.94183 3.94183 1.46634 0.26236 0.00000 *
+ 1 2.69765 2.44396 2.81521 0.24089 1 t x - -
+ 1.38629 1.38629 1.38629 1.38629
+ 0.03960 3.94183 3.94183 1.46634 0.26236 1.09861 0.40547
+ 2 2.72939 2.37873 2.85832 0.24244 2 t x - -
+ 1.38629 1.38629 1.38629 1.38629
+ 0.03725 4.00179 4.00179 1.46634 0.26236 1.09861 0.40547
+ 3 0.16099 3.16370 2.87328 2.99734 3 a x - -
+ 1.38629 1.38629 1.38629 1.38629
+ 0.03604 4.03416 4.03416 1.46634 0.26236 1.09861 0.40547
+ 4 1.98862 2.42132 0.42649 2.10770 4 g x - -
+ 1.38629 1.38629 1.38629 1.38629
+ 0.03539 4.05203 4.05203 1.46634 0.26236 1.09861 0.40547
+ 5 1.96369 2.69532 0.36534 2.32099 5 g x - -
+ 1.38629 1.38629 1.38629 1.38629
+ 0.03764 4.06427 3.92372 1.46634 0.26236 1.09861 0.40547
+ 6 2.56994 2.11239 2.71946 0.30571 6 t x - -
+ 1.37159 1.41129 1.39124 1.37159
+ 0.03806 3.89715 4.07214 1.50442 0.25122 1.00714 0.45454
+ 7 2.58388 2.10353 2.64646 0.31253 12 t x - -
+ 1.38764 1.38524 1.38764 1.38465
+ 0.03494 4.03864 4.09125 1.40070 0.28293 1.09237 0.40860
+ 8 2.18552 2.70201 0.28821 2.64645 14 g x - -
+ 1.38629 1.38629 1.38629 1.38629
+ 0.03628 4.09157 3.96779 1.46634 0.26236 1.09861 0.40547
+ 9 2.16916 2.82142 0.28427 2.60854 15 g x - -
+ 1.38091 1.39033 1.38365 1.39033
+ 0.03566 4.00237 4.08886 1.38021 0.28972 1.01958 0.44745
+ 10 2.45517 2.15232 2.42886 0.34277 18 t x - -
+ 1.39065 1.39065 1.39065 1.37335
+ 0.03536 4.01212 4.09576 1.39554 0.28462 1.09775 0.40589
+ 11 2.10260 2.95484 0.28160 2.64222 21 g x - -
+ 1.36740 1.40555 1.40555 1.36740
+ 0.03843 3.92069 4.02468 1.44733 0.26814 1.09856 0.40549
+ 12 2.54740 0.30185 2.61355 2.21647 26 c x - -
+ 1.38748 1.38276 1.38748 1.38748
+ 0.03457 4.05446 4.09623 1.40847 0.28040 1.05496 0.42803
+ 13 0.28443 2.72003 2.32214 2.48149 28 a x - -
+ 1.38740 1.38740 1.38298 1.38740
+ 0.03441 4.05976 4.10001 1.41198 0.27926 1.09780 0.40587
+ 14 0.29412 2.55413 2.49679 2.35701 30 a x - -
+ 1.38194 1.39067 1.38194 1.39067
+ 0.03505 4.02482 4.10005 1.39522 0.28473 1.09929 0.40512
+ 15 0.18837 2.99710 2.82270 2.77556 33 a x - -
+ 1.39015 1.39472 1.37503 1.38539
+ 0.03725 3.97815 4.02618 1.37955 0.28994 1.10102 0.40426
+ 16 0.50816 2.05151 2.22111 1.82407 37 a x - -
+ 1.36727 1.38730 1.39683 1.39405
+ 0.04830 3.89881 3.61610 1.29026 0.32186 1.05306 0.42905
+ 17 2.11260 2.73141 0.29747 2.64152 41 g x - -
+ 1.36913 1.40376 1.40376 1.36913
+ 0.03705 3.93681 4.08299 1.44872 0.26771 1.07479 0.41759
+ 18 2.24459 1.90539 2.34054 0.43234 46 t x - -
+ 1.33632 1.42493 1.39937 1.38665
+ 0.04427 3.64574 4.06297 1.70501 0.20061 1.21309 0.35279
+ 19 0.44322 2.17202 2.18055 2.03175 57 a x - -
+ 1.41047 1.41471 1.36338 1.35797
+ 0.03970 3.81957 4.07540 1.65588 0.21186 1.22788 0.34660
+ 20 0.33340 2.42691 2.40824 2.25160 66 a x - -
+ 1.29389 1.44615 1.37917 1.43324
+ 0.04223 3.70146 4.09459 1.55158 0.23815 1.05880 0.42598
+ 21 2.50563 1.98543 2.69601 0.33746 74 t x - -
+ 1.39462 1.39462 1.42862 1.32990
+ 0.04184 3.80216 3.98177 1.80466 0.17976 1.00279 0.45705
+ 22 2.54484 1.97505 2.66483 0.33806 84 t x - -
+ 1.39134 1.39489 1.38662 1.37246
+ 0.03877 3.97504 3.95038 1.37620 0.29107 1.13932 0.38572
+ 23 2.10159 2.83856 0.29282 2.61635 88 g x - -
+ 1.39682 1.39682 1.35536 1.39682
+ 0.05046 3.75402 3.65808 1.08330 0.41321 1.13019 0.39004
+ 24 2.25298 0.61854 2.50691 1.29221 90 c x - -
+ 1.35803 1.49605 1.46737 1.24379
+ 0.06091 3.28322 3.83564 1.89752 0.16245 1.28788 0.32276
+ 25 1.27819 2.23285 0.76242 1.91259 106 g x - -
+ 1.29024 1.67349 1.68279 1.04597
+ 0.05752 3.44263 3.73311 2.58671 0.07825 1.26818 0.33037
+ 26 1.86925 2.58352 0.39466 2.33986 131 g x - -
+ 1.31084 1.49412 1.46666 1.29002
+ 0.04698 3.54257 4.07715 2.25245 0.11109 0.86163 0.54900
+ 27 2.38297 1.93394 2.39162 0.39800 151 t x - -
+ 1.33582 1.47359 1.44163 1.30411
+ 0.04951 3.48445 4.03783 2.15951 0.12260 1.21681 0.35122
+ 28 2.41717 2.17810 2.62774 0.32113 170 t x - -
+ 1.36805 1.48060 1.37439 1.32840
+ 0.04849 3.50958 4.05014 2.58370 0.07850 1.22399 0.34822
+ 29 2.57764 2.35132 2.56552 0.28512 194 t x - -
+ 1.43829 1.43458 1.24787 1.43829
+ 0.04667 3.56670 4.05428 2.49706 0.08591 1.23744 0.34267
+ 30 2.47248 2.07688 2.62257 0.33172 215 t x - -
+ 1.25120 1.52623 1.70635 1.15531
+ 0.08932 3.31524 3.01336 2.81842 0.06156 1.22909 0.34610
+ 31 2.25937 2.13157 2.02027 0.43957 248 t x - -
+ 1.18172 1.43522 1.72841 1.28150
+ 0.07936 2.93117 3.77395 2.46269 0.08906 0.60457 0.79034
+ 32 2.04508 2.84981 0.30490 2.58263 280 g x - -
+ 1.17665 1.66785 1.66218 1.16056
+ 0.05998 3.23615 3.96853 2.83684 0.06040 1.01952 0.44749
+ 33 2.45103 0.38098 2.56776 1.87147 317 c x - -
+ 1.24153 1.52524 1.60663 1.22783
+ 0.05538 3.39046 3.90294 2.73920 0.06680 1.18729 0.36391
+ 34 2.22082 0.36258 2.75077 2.02704 347 c x - -
+ 1.15008 1.62014 1.86511 1.10673
+ 0.06086 3.18178 4.04341 2.94504 0.05403 1.25991 0.33363
+ 35 0.27033 2.66664 2.52541 2.43767 388 a x - -
+ 1.24951 1.47565 1.41392 1.42074
+ 0.07123 3.00373 3.95552 3.13655 0.04440 1.28173 0.32512
+ 36 2.83107 2.41670 2.97197 0.22235 439 t x - -
+ 1.37071 1.57683 1.38637 1.23972
+ 0.05293 3.45216 3.91807 2.54402 0.08181 1.14651 0.38235
+ 37 2.52322 2.25084 2.45909 0.31611 465 t x - -
+ 1.26335 1.55077 1.59008 1.19965
+ 0.07504 3.13329 3.55006 3.08962 0.04659 1.13108 0.38962
+ 38 0.45807 2.30687 1.98940 2.03143 512 a x - -
+ 1.15472 1.67511 1.53797 1.26320
+ 0.09820 3.13076 2.99876 2.79197 0.06326 1.39915 0.28343
+ 39 2.37471 0.42180 2.44763 1.80427 550 c x - -
+ 1.23785 1.49058 1.48364 1.35502
+ 0.06081 3.19472 4.01643 2.41851 0.09327 0.94671 0.49105
+ 40 2.32826 1.95481 2.36781 0.40458 578 t x - -
+ 1.36586 1.46001 1.43000 1.29720
+ 0.05257 3.39673 4.03256 1.84862 0.17133 1.40979 0.27997
+ 41 2.68669 2.13935 2.81520 0.28200 592 t x - -
+ 1.34965 1.42793 1.45781 1.31633
+ 0.04735 3.57826 3.99988 2.09424 0.13144 1.22129 0.34934
+ 42 2.55904 2.16444 2.70859 0.29952 609 t x - -
+ 1.12072 1.61936 1.63578 1.26895
+ 0.07346 3.25910 3.42962 2.85641 0.05919 1.38363 0.28857
+ 43 1.99923 1.61027 2.26343 0.57851 646 t x - -
+ 1.32290 1.58747 1.61095 1.11018
+ 0.06656 3.08568 3.97944 2.44774 0.09046 0.75593 0.63407
+ 44 0.23887 2.79899 2.55209 2.60783 675 a x - -
+ 1.18557 1.50323 1.59070 1.31590
+ 0.05597 3.38637 3.88222 2.46900 0.08847 1.27945 0.32599
+ 45 0.29593 2.53488 2.53903 2.32335 701 a x - -
+ 1.08710 1.54222 1.59276 1.40430
+ 0.07539 2.94521 3.91062 1.91623 0.15918 1.22327 0.34852
+ 46 2.58352 2.40524 2.76700 0.25955 725 t x - -
+ 1.19685 1.58503 1.74852 1.14293
+ 0.06124 3.18279 4.02089 2.82961 0.06085 1.05474 0.42814
+ 47 2.13251 2.88788 0.29508 2.50964 764 g x - -
+ 1.20891 1.55463 1.68206 1.19000
+ 0.06526 3.12574 3.94910 2.41448 0.09367 1.10396 0.40280
+ 48 2.23841 2.99164 0.25118 2.72900 792 g x - -
+ 1.26330 1.55339 1.52606 1.24355
+ 0.05464 3.34968 4.01313 2.78872 0.06347 1.15133 0.38012
+ 49 2.57533 0.32900 2.64632 2.01501 824 c x - -
+ 1.35118 1.39828 1.40141 1.39516
+ 0.04340 3.79297 3.91506 1.59549 0.22666 1.20075 0.35806
+ 50 0.46433 2.04127 2.23437 2.00605 833 a x - -
+ 1.23062 1.36903 1.62282 1.36182
+ 0.05764 3.31530 3.92762 2.28791 0.10700 1.07910 0.41536
+ 51 0.27513 2.77017 2.28518 2.57549 853 a x - -
+ 1.27958 1.58726 1.46109 1.25394
+ 0.05750 3.30072 3.96214 2.60776 0.07656 1.25708 0.33475
+ 52 0.20149 2.86434 2.84551 2.69770 883 a x - -
+ 1.23645 1.62259 1.71174 1.10368
+ 0.05756 3.26729 4.02702 2.54508 0.08172 1.27391 0.32814
+ 53 0.26982 2.65833 2.50477 2.46835 911 a x - -
+ 1.36005 1.50358 1.48100 1.22550
+ 0.06921 3.37553 3.42118 2.36646 0.09851 1.27560 0.32748
+ 54 0.40022 2.19284 2.22687 2.20396 934 a x - -
+ 1.12070 1.60472 1.53213 1.35895
+ 0.05523 3.36752 3.94966 2.42917 0.09224 0.84774 0.55928
+ 55 2.11356 0.46400 2.46442 1.79955 960 c x - -
+ 1.23932 1.35913 1.50478 1.46331
+ 0.05187 3.47055 3.94022 2.35854 0.09933 1.12102 0.39445
+ 56 1.85868 0.79440 2.22069 1.25971 983 c x - -
+ 1.21951 1.50212 1.51138 1.34185
+ 0.06404 3.29054 3.69705 1.75742 0.18933 1.18410 0.36532
+ 57 1.33272 2.32720 0.71452 1.90215 999 g x - -
+ 1.12229 1.49343 1.56653 1.42255
+ 0.04920 3.46654 4.08749 2.17995 0.11996 1.31769 0.31164
+ 58 2.48337 0.43652 2.46331 1.68683 1017 c x - -
+ 1.34704 1.55461 1.38112 1.28222
+ 0.04823 3.61532 3.90311 2.20911 0.11631 1.00864 0.45368
+ 59 0.41659 2.44509 1.93972 2.20507 1034 a x - -
+ 1.38198 1.38198 1.39194 1.38932
+ 0.03641 3.98130 4.06929 1.35873 0.29704 1.31330 0.31325
+ 60 0.41612 2.39160 1.97116 2.21075 1037 a x - -
+ 1.03649 1.46430 1.57421 1.57557
+ 0.04769 3.52580 4.06641 2.32461 0.10294 0.84329 0.56263
+ 61 2.66264 2.12302 2.82746 0.28581 1056 t x - -
+ 1.36925 1.39635 1.38930 1.39048
+ 0.04097 3.97400 3.84718 1.39433 0.28502 1.12205 0.39395
+ 62 2.26510 2.13196 2.42551 0.37231 1060 t x - -
+ 1.37965 1.39147 1.39147 1.38264
+ 0.04082 3.91610 3.90805 1.24613 0.33914 0.95192 0.48776
+ 63 0.41244 2.25761 2.16787 2.12907 1062 a x - -
+ 1.34515 1.41203 1.41203 1.37753
+ 0.04054 3.77835 4.08203 1.30483 0.31638 1.11819 0.39582
+ 64 2.51464 0.37905 2.62296 1.82008 1068 c x - -
+ 1.39543 1.38753 1.39233 1.37008
+ 0.03854 3.90584 4.03535 1.36573 0.29463 1.13682 0.38689
+ 65 2.16380 2.11332 2.18714 0.42765 1073 t x - -
+ 1.38764 1.38471 1.38519 1.38764
+ 0.03575 4.05376 4.03073 1.40080 0.28289 1.03825 0.43707
+ 66 2.79349 2.39141 2.87271 0.23478 1075 t x - -
+ 1.37227 1.39101 1.39101 1.39101
+ 0.03597 4.01447 4.05827 1.39017 0.28639 1.06429 0.42308
+ 67 2.82488 2.47749 2.93179 0.21887 1078 t x - -
+ 1.38141 1.39112 1.38915 1.38353
+ 0.03661 3.99477 4.04370 1.35958 0.29675 1.13439 0.38804
+ 68 2.77679 2.30433 2.90694 0.24425 1081 t x - -
+ 1.37593 1.38989 1.45520 1.32825
+ 0.04447 3.68736 3.99242 1.76176 0.18843 0.98580 0.46703
+ 69 2.47698 3.17398 0.19595 2.95437 1093 g x - -
+ 1.38264 1.38264 1.39734 1.38264
+ 0.05358 3.96553 3.40487 1.40348 0.28202 1.03112 0.44100
+ 70 2.84327 0.27906 2.97336 2.00890 1097 c x - -
+ 1.38629 1.38629 1.38629 1.38629
+ 0.03412 4.08811 4.08811 1.46634 0.26236 0.69006 0.69625
+ 71 0.21870 2.83638 2.69251 2.65798 1098 a x - -
+ 1.37446 1.37942 1.39640 1.39509
+ 0.03670 3.93983 4.09935 1.41905 0.27700 1.10002 0.40476
+ 72 2.35233 0.46085 2.23804 1.78715 1103 c x - -
+ 1.38536 1.38781 1.38781 1.38421
+ 0.03493 4.03822 4.09272 1.39310 0.28542 1.09638 0.40658
+ 73 2.57111 0.32543 2.74124 1.98892 1105 c x - -
+ 1.38629 1.38629 1.38629 1.38629
+ 0.03381 4.09688 4.09688 1.46634 0.26236 1.09626 0.40664
+ 74 0.27014 2.61416 2.53262 2.47636 1106 a x - -
+ 1.38629 1.38629 1.38629 1.38629
+ 0.03461 4.09267 4.05587 1.46634 0.26236 1.09748 0.40603
+ 75 0.52873 2.16549 1.91736 1.90409 1107 a x - -
+ 1.38629 1.38629 1.38629 1.38629
+ 0.03426 4.08396 4.08396 1.46634 0.26236 1.07423 0.41788
+ 76 2.33134 0.38082 2.65861 1.90055 1108 c x - -
+ 1.38629 1.38629 1.38629 1.38629
+ 0.03466 4.07266 4.07266 1.46634 0.26236 1.09861 0.40547
+ 77 2.20588 0.45134 2.35553 1.84373 1109 c x - -
+ 1.38629 1.38629 1.38629 1.38629
+ 0.03550 4.04912 4.04912 1.46634 0.26236 1.09861 0.40547
+ 78 2.69018 2.22054 2.82311 0.26898 1110 t x - -
+ 1.38629 1.38629 1.38629 1.38629
+ 0.03711 4.00561 4.00561 1.46634 0.26236 1.09861 0.40547
+ 79 0.16248 3.15867 2.86159 2.98963 1111 a x - -
+ 1.38629 1.38629 1.38629 1.38629
+ 0.04048 3.92018 3.92018 1.46634 0.26236 1.09861 0.40547
+ 80 0.17484 3.04770 2.86638 2.88183 1112 a x - -
+ 1.38629 1.38629 1.38629 1.38629
+ 0.02045 3.90014 * 1.46634 0.26236 0.00000 *
+//
--- /dev/null
+HMMER3/e [3.0 | March 2010]
+NAME Pkinase
+ACC PF00069.17
+DESC Protein kinase domain
+LENG 260
+ALPH amino
+RF no
+CONS yes
+CS yes
+MAP yes
+DATE Thu Jun 16 11:44:06 2011
+NSEQ 54
+EFFN 3.358521
+CKSUM 3106786190
+GA 70.30 70.30
+TC 70.30 70.30
+NC 70.20 70.20
+STATS LOCAL MSV -10.7215 0.70254
+STATS LOCAL VITERBI -11.6541 0.70254
+STATS LOCAL FORWARD -5.2305 0.70254
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ m->m m->i m->d i->m i->i d->m d->d
+ COMPO 2.60017 4.19886 2.94089 2.63789 3.35087 2.89119 3.48337 2.79435 2.60265 2.43454 3.62613 3.06133 3.41286 3.09693 2.94507 2.65650 2.87761 2.67871 4.54052 3.43274
+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
+ 0.00990 5.01631 5.73865 0.61958 0.77255 0.00000 *
+ 1 2.91704 4.31028 4.76351 3.63148 2.10912 3.47710 4.39734 2.27639 3.96619 1.99282 3.42844 4.19567 4.43771 4.11903 3.67403 3.22736 3.14918 2.35905 3.32515 1.82622 1 y - - E
+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
+ 0.00990 5.01631 5.73865 0.61958 0.77255 0.48576 0.95510
+ 2 2.77204 4.20708 3.06476 1.97968 4.66603 3.66509 3.19858 3.37903 2.25347 3.34018 4.38833 2.97180 4.05804 2.36838 2.43173 2.67542 2.50268 2.83403 5.78758 4.38976 2 e - - E
+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
+ 0.00990 5.01631 5.73865 0.61958 0.77255 0.48576 0.95510
+ 3 2.90076 4.04294 3.31590 2.80413 3.08157 3.87481 4.12616 2.18958 2.49735 1.97194 3.73714 3.32717 3.98753 3.23115 3.12315 2.99137 2.62008 2.29426 5.21478 3.75979 3 l - - E
+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
+ 0.00990 5.01631 5.73865 0.61958 0.77255 0.48576 0.95510
+ 4 2.89383 4.85429 3.10311 2.63174 3.71383 2.56808 3.47232 2.82076 2.61844 1.98342 3.72320 3.05498 4.17347 3.05527 3.32194 2.85608 2.93671 2.18878 5.40057 3.87183 4 l - - E
+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
+ 0.00990 5.01631 5.73865 0.61958 0.77255 0.48576 0.95510
+ 5 2.68261 5.39185 2.80437 1.87471 4.73638 2.79887 3.69591 4.22191 2.19487 3.69685 4.08896 3.12413 3.70490 2.48424 2.08916 2.53260 3.02309 3.43812 5.82480 4.41426 5 e - - E
+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503
+ 0.00990 5.01631 5.73865 0.61958 0.77255 0.48576 0.95510
+ 6 2.77253 4.06085 3.07881 2.53373 4.10647 3.71564 3.68370 2.64290 2.00036 2.72968 4.17370 3.24239 3.08607 2.77632 2.72820 2.69921 2.54335 2.71931 5.60386 4.26496 6 k - - E
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+ 0.00667 5.01308 * 0.61958 0.77255 0.00000 *
+//
--- /dev/null
+HMMER3/e [3.0 | March 2010]
+NAME Pkinase
+ACC PF00069.17
+DESC Protein kinase domain
+LENG 260
+ALPH amino
+RF no
+MM no
+CONS yes
+CS yes
+MAP yes
+DATE Thu Jun 16 11:44:06 2011
+NSEQ 54
+EFFN 3.358521
+CKSUM 3106786190
+GA 70.30 70.30
+TC 70.30 70.30
+NC 70.20 70.20
+STATS LOCAL MSV -10.7215 0.70254
+STATS LOCAL VITERBI -11.6541 0.70254
+STATS LOCAL FORWARD -5.2305 0.70254
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ m->m m->i m->d i->m i->i d->m d->d
+ COMPO 2.60017 4.19886 2.94089 2.63789 3.35087 2.89119 3.48337 2.79435 2.60265 2.43454 3.62613 3.06133 3.41286 3.09693 2.94507 2.65650 2.87761 2.67871 4.54052 3.43274
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+ 0.00667 5.01308 * 0.61958 0.77255 0.00000 *
+//
\ No newline at end of file
--- /dev/null
+HMMER3/f [3.1b1 | May 2013]
+NAME fn3
+ACC PF00041.13
+DESC Fibronectin type III domain
+LENG 86
+ALPH amino
+RF no
+MM no
+CONS yes
+CS yes
+MAP yes
+DATE Fri Jun 20 08:22:31 2014
+NSEQ 106
+EFFN 11.415833
+CKSUM 3564431818
+GA 8.00 7.20
+TC 8.00 7.20
+NC 7.90 7.90
+STATS LOCAL MSV -9.4043 0.71847
+STATS LOCAL VITERBI -9.7737 0.71847
+STATS LOCAL FORWARD -3.8341 0.71847
+HMM A C D E F G H I K L M N P Q R S T V W Y
+ m->m m->i m->d i->m i->i d->m d->d
+ COMPO 2.70330 4.91262 3.03272 2.64079 3.60307 2.84344 3.74204 3.07942 2.79841 2.65364 4.14864 2.95826 2.87120 3.02176 2.96125 2.44783 2.59757 2.57680 4.02726 3.21526
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+ 0.00338 6.08833 6.81068 0.61958 0.77255 0.00000 *
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+//
git://source.jalview.org / jalview.git / commitdiff