implementation that allows updates) used for Sequence Feature collections</li>
<li>
<li>
- <!-- JAL-2808,JAL-2069,JAL-2820 -->Sequence features can be filtered and
- shaded according to any associated attributes (e.g. variant
- attributes from VCF file, or key-value pairs imported from
- column 9 of GFF file)
- </li>
- <li>
+ <!-- JAL-2744, JAL-2808,JAL-2069,JAL-2820 -->Sequence
+ features can be filtered and shaded according to any
+ associated attributes (e.g. variant attributes from VCF
+ file, or key-value pairs imported from column 9 of GFF
+ file)
+ </li>
+ <li>
+ <!-- JAL-2879 -->Feature Attributes and shading schemes
+ stored and restored from Jalview Projects
+ </li>
+ <li>
<!-- JAL-3334 -->Use full Sequence Ontology (via BioJava) to
recognise variant features
</li>
<!-- JAL-3196,JAL-3179.JAL-2671 -->Build system migrated from Ant to Gradle
</li>
<li><!-- JAL-1424 -->Enhanced checks for missing and duplicated keys in Message bundles</li>
- <li>
- <!-- JAL-3225 -->Eclipse project configuration managed with
- gradle-eclipse
- </li>
- <li><!-- JAL-3174,JAL-2886,JAL-2729 -->
- Atlassian Bamboo continuous integration for
- unattended Test Suite execution</li>
+ <li>
+ <!-- JAL-3225 -->Eclipse project configuration managed with
+ gradle-eclipse
+ </li>
+ <li>
+ <!-- JAL-3174,JAL-2886,JAL-2729,JAL-1889 --> Atlassian
+ Bamboo continuous integration for unattended Test Suite
+ execution
+ </li>
<li>
<!-- JAL-2864 -->Memory test suite to detect leaks in common
- operations</li>
- <li><!-- JAL-2360,JAL-2416 -->More unit test coverage, and minor issues resolved.</li>
- <li><!-- JAL-3248 -->Developer documentation migrated to markdown (with HTML rendering)</li>
+ operations
+ </li>
+ <li>
+ <!-- JAL-2360,JAL-2416 -->More unit test coverage, and minor
+ issues resolved.
+ </li>
+ <li>
+ <!-- JAL-3248 -->Developer documentation migrated to
+ markdown (with HTML rendering)
+ </li>
+ <li>
+ <!-- JAL-3287 -->HelpLinksChecker runs on Windows
+ </li>
+ <li>
+ <!-- JAL-3289 -->New URLs for publishing development
+ versions of Jalview
+ </li>
+ <li>
+ <li>
</ul>
</td>
<td align="left" valign="top">
<!-- JAL-2986 -->Sequence.findIndex returns wrong value when
sequence's End is greater than its length
</li>
- </ul> <em>New Known Defects</em>
+ <li><strong>Bugs fixed for Java 11 Support (not
+ yet on general release)</strong>
+ <ul>
+ <li>
+ <!-- JAL-3288 -->Menus work properly in split-screen
+ </li>
+ </ul></li>
+ </ul> <em>New Known Defects</em>
<ul>
<li><!-- JAL-3340 -->Select columns containing feature by double clicking ignores bounds of an existing selected region
</li>