// sequences retrieved in a Pfam domain alignment also have a PFAM database
// reference
SequenceI sq = new Sequence("FER2_SPIOL", "AASSDDDFFF");
- sq.addDBRef(new DBRefEntry("PFAM", "1", "PF00111"));
sq.addDBRef(new DBRefEntry("UNIPROT", "1", "P00224"));
sq.addDBRef(new DBRefEntry("PFAM", "1", "P00224.1"));
+ sq.addDBRef(new DBRefEntry("PFAM", "1", "PF00111"));
AppletFormatAdapter af = new AppletFormatAdapter();
String toStockholm = af.formatSequences(FileFormat.Stockholm,
new Alignment(new SequenceI[]