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standard embedded jalviewLite example (JAL-815)
authorjprocter <jprocter@compbio.dundee.ac.uk>
Wed, 29 Jun 2011 17:34:20 +0000 (18:34 +0100)
committerjprocter <jprocter@compbio.dundee.ac.uk>
Wed, 29 Jun 2011 17:34:20 +0000 (18:34 +0100)
examples/embedded.html [new file with mode: 0644] patch | blob

diff --git a/examples/embedded.html b/examples/embedded.html
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+<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">\r
+<html xmlns="http://www.w3.org/1999/xhtml">\r
+<title>\r
+Embedded viewing of Alignments\r
+</title>\r
+<body>\r
+<h1>Embedded viewing of Alignments</h1>\r
+<p>The alignment below was generated from the following files:\r
+<ul>\r
+       <li><a href="plantfdx.fa">plantfdx.fa</a> - Alignment file in\r
+       FASTA format</li>\r
+       <li><a href="plantfdx.features">plantfdx.features</a> - Jalview\r
+       Format Sequence Features file</li>\r
+       <li><a href="plantfdx.annotations">plantfdx.annotations</a> -\r
+       Jalview Alignment Annotations File</li>\r
+</ul>\r
+<applet code="jalview.bin.JalviewLite"\r
+                       width="756" height="560" archive="../../jalviewApplet.jar">\r
+                       <param name="file" value="plantfdx.fa">\r
+                       <param name="annotations" value="plantfdx.annotations">\r
+                       <param name="features" value="plantfdx.features">\r
+                       <param name="embedded" value="true">\r
+                       <param name="userDefinedColour"\r
+                               value="C=yellow; R,K,H=FF5555; D,E=5555FF">\r
+                       <param name="showFullId" value="false">\r
+                       <param name="RGB" value="F2F2FF">\r
+                       <param name="linkLabel_1" value="SRS">\r
+                       <param name="linkUrl_1"\r
+                               value="http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz?-e+[uniprot-all:$SEQUENCE_ID$]+-vn+2">\r
+                       <param name="linkLabel_2" value="Uniprot">\r
+                       <param name="linkUrl_2"\r
+                               value="http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$">\r
+                       <param name="APPLICATION_URL"\r
+                               value="http://www.jalview.org/services/launchApp">\r
+               </applet>\r
+</p>\r
+</body>\r
+</html>\r