vamsasSeq.setId(id + "");\r
vamsasSeq.setName(jal.getSequenceAt(i).getName());\r
vamsasSeq.setSequence(jal.getSequenceAt(i).getSequence());\r
+ vamsasSeq.setDescription(jal.getSequenceAt(i).getDescription());\r
\r
jseq = new JSeq();\r
jseq.setStart(jal.getSequenceAt(i).getStart());\r
{\r
jseqs[i] = new jalview.datamodel.Sequence(vamsasSeq[i].getName(),\r
vamsasSeq[i].getSequence());\r
+ jseqs[i].setDescription( vamsasSeq[i].getDescription() );\r
\r
jseqs[i].setStart(JSEQ[i].getStart());\r
jseqs[i].setEnd(JSEQ[i].getEnd());\r