Merge branch 'features/JAL-2388OverviewWindow' into develop

diff --cc help/help.jhm
Simple merge

diff --cc help/helpTOC.xml
index 6e7f5ac,989d70b..f76da16
--- 1/help/helpTOC.xml
--- 2/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@@ -24,7 -24,7 +24,8 @@@
        <tocitem text="Jalview Documentation" target="home" expand="true">
                        <tocitem text="What's new" target="new" expand="true">
                                <tocitem text="Latest Release Notes" target="release"/>
 +                              <tocitem text="Groovy Features Counter example" target="groovy.featurescounter"/>
+                               <tocitem text="Omit hidden regions in Overview" target="overview"/>
                </tocitem>
                
                <tocitem text="Editing Alignments" target="edit" />

diff --cc resources/lang/Messages.properties
Simple merge

diff --cc resources/lang/Messages_es.properties
index 28c0eaa,5932698..563684b
--- 1/resources/lang/Messages_es.properties
--- 2/resources/lang/Messages_es.properties
+++ b/resources/lang/Messages_es.properties
@@@ -1300,9 -1301,4 +1300,10 @@@ warn.name_cannot_be_duplicate = Los nom
  label.invalid_name = Nombre inválido !
  label.output_seq_details = Seleccionar Detalles de la secuencia para ver todas
  label.urllinks = Enlaces
 -label.togglehidden = Show hidden regions
 +label.quality_descr = Calidad de alineamiento basándose en puntuación Blosum62
 +label.conservation_descr = Conservación del alineamiento total menos de {0}% huecos
 +label.consensus_descr = % Identidad
 +label.complement_consensus_descr = % Identidad para cDNA
 +label.strucconsensus_descr = % Identidad para pares de bases
 +label.occupancy_descr = Número de posiciones alineadas
++label.togglehidden = Show hidden regions

diff --cc src/jalview/gui/AlignFrame.java
Simple merge

diff --cc src/jalview/gui/SeqPanel.java
Simple merge

diff --cc src/jalview/gui/SequenceRenderer.java
Simple merge