JAL-789 limit applicable score models to substitution matrix based ones

diff --git a/src/jalview/gui/CalculationChooser.java b/src/jalview/gui/CalculationChooser.java
index bd3c960..8e5cc9e 100644 (file)
--- a/src/jalview/gui/CalculationChooser.java
+++ b/src/jalview/gui/CalculationChooser.java
@@ -593,7 +593,7 @@ public class CalculationChooser extends JPanel
             .isSecondaryStructurePresent(alignmentAnnotations);
 
     List<ScoreModelI> models = getApplicableScoreModels(nucleotide,
-            pca.isSelected(), ssPresent, pasimap.isSelected());
+            pca.isSelected(), ssPresent, (pasimap.isSelected() || pairwise.isSelected()));
 
     /*
      * now we can actually add entries to the combobox,