import jalview.analysis.AlignmentSorter;
import jalview.analysis.SeqsetUtils;
import jalview.analysis.SeqsetUtils.SequenceInfo;
+import jalview.api.AlignViewportI;
import jalview.bin.Cache;
import jalview.datamodel.AlignedCodonFrame;
import jalview.datamodel.Alignment;
private AlignmentI dataset;
- private AlignViewport viewport;
+ private AlignViewportI viewport;
private List<AlignedCodonFrame> codonFrame = new ArrayList<>();
public AlignmentWorker(AlignmentOperation operation,
AlignmentView msa, List<ArgumentI> args,
- boolean submitGaps, boolean preserveOrder, AlignViewport viewport)
+ boolean submitGaps, boolean preserveOrder, AlignViewportI viewport)
{
this.operation = operation;
this.msa = msa;