JBuilder Project file update

diff --git a/JalviewX.jpx b/JalviewX.jpx
index 4179212..3cbdc60 100755 (executable)
--- a/JalviewX.jpx
+++ b/JalviewX.jpx
@@ -1,59 +1,23 @@
-<?xml version="1.0" encoding="UTF-8"?>\r
-<!--JBuilder XML Project-->\r
-<project>\r
-  <property category="debug.0" name="SmartStepRedefineClasses" value="0"/>\r
-  <property category="debug.0" name="SmartStepSkipStaticInitializers" value="0"/>\r
-  <property category="debug.0" name="SmartStepSkipSynthetics" value="0"/>\r
-  <property category="javaFormatting" name="EventStyle" value="0"/>\r
-  <property category="javaFormatting" name="classBraceNextLine" value="1"/>\r
-  <property category="javaFormatting" name="methodBraceNextLine" value="1"/>\r
-  <property category="javaFormatting" name="otherBraceNextLine" value="1"/>\r
-  <property category="javaFormatting" name="throwsOnNewLine" value="1"/>\r
-  <property category="javadoc" name="custom.tags.1" value="todo;a;To Do:"/>\r
-  <property category="optimize.0" name="OptimizableType" value="com.borland.jbuilder.optimize.IntroOptimizeitProfiler"/>\r
-  <property category="personality" name="personality" value=""/>\r
-  <property category="runtime" name="DefaultConfiguration" value="-1"/>\r
-  <property category="runtime.0" name="BuildTargetOnRun" value="com.borland.jbuilder.build.ProjectBuilder$ProjectBuildAction;make"/>\r
-  <property category="runtime.0" name="ConfigurationName" value="From the top"/>\r
-  <property category="runtime.0" name="ExclusionFilter" value="3"/>\r
-  <property category="runtime.0" name="RunnableType" value="com.borland.jbuilder.runtime.ApplicationRunner"/>\r
-  <property category="runtime.0" name="application.class" value="jalview.bin.Jalview"/>\r
-  <property category="runtime.0" name="application.parameters" value="C:\JalviewX\fasta"/>\r
-  <property category="serverservices" name="single.server.name" value="Tomcat 4.0"/>\r
-  <property category="sys" name="AuthorLabel" value="@author"/>\r
-  <property category="sys" name="BackupPath" value="bak"/>\r
-  <property category="sys" name="CheckStable" value="1"/>\r
-  <property category="sys" name="Company" value="Dundee University"/>\r
-  <property category="sys" name="CompanyLabel" value="Company:"/>\r
-  <property category="sys" name="Copyright" value="Copyright (c) 2004"/>\r
-  <property category="sys" name="CopyrightLabel" value="Copyright:"/>\r
-  <property category="sys" name="DefaultPath" value="src"/>\r
-  <property category="sys" name="Description" value="Jalview Re-engineered"/>\r
-  <property category="sys" name="DescriptionLabel" value="Description:"/>\r
-  <property category="sys" name="DocPath" value="doc"/>\r
-  <property category="sys" name="ExcludeClassEnabled" value="0"/>\r
-  <property category="sys" name="IncludeTestPath" value="1"/>\r
-  <property category="sys" name="InstanceVisibility" value="2"/>\r
-  <property category="sys" name="JDK" value="java version 1.4.2_01-b06"/>\r
-  <property category="sys" name="JvmVersion" value="1.2"/>\r
-  <property category="sys" name="LastTag" value="0"/>\r
-  <property category="sys" name="Libraries" value=""/>\r
-  <property category="sys" name="MakeStable" value="0"/>\r
-  <property category="sys" name="OutPath" value="classes"/>\r
-  <property category="sys" name="SourcePath" value="src;test"/>\r
-  <property category="sys" name="TestPath" value="test"/>\r
-  <property category="sys" name="Title" value="JalviewX"/>\r
-  <property category="sys" name="TitleLabel" value="Title:"/>\r
-  <property category="sys" name="Version" value="1.0"/>\r
-  <property category="sys" name="VersionLabel" value="@version"/>\r
-  <property category="sys" name="WorkingDirectory" value="."/>\r
-  <property category="sys" name="uidesign.size.jalview.gimp.GCutAndPasteTransfer" value="400,436"/>\r
-  <property category="sys" name="uidesign.size.jalview.gimp.GUserDefinedColours" value="464,485"/>\r
-  <property category="sys" name="uidesign.size.jalview.gui.GAlignmentPanel" value="573,436"/>\r
-  <property category="sys" name="uidesign.size.jalview.gui.GColorKey" value="442,252"/>\r
-  <property category="sys" name="uidesign.size.jalview.gui.GColourKey" value="400,400"/>\r
-  <property category="sys" name="uidesign.size.jalview.gui.GCutAndPasteTransfer" value="400,300"/>\r
-  <property category="sys" name="uidesign.size.jalview.gui.GTreePanel" value="529,329"/>\r
-  <property category="sys" name="uidesign.size.jalview.gui.GUserDefinedColours" value="447,499"/>\r
-  <property category="sys" name="uidesign.size.jalview.gui.TreePanel" value="402,303"/>\r
-</project>\r
+<?xml version="1.0" encoding="UTF-8"?>
+
+<!--JBuilder XML Project-->
+<project>
+  <property category="javaFormatting" name="EventStyle" value="0"/>
+  <property category="javaFormatting" name="classBraceNextLine" value="1"/>
+  <property category="javaFormatting" name="methodBraceNextLine" value="1"/>
+  <property category="javaFormatting" name="otherBraceNextLine" value="1"/>
+  <property category="javaFormatting" name="throwsOnNewLine" value="1"/>
+  <property category="serverservices" name="single.server.name" value="Tomcat 4.0"/>
+  <property category="sys" name="BackupPath" value="bak"/>
+  <property category="sys" name="Company" value="Dundee University"/>
+  <property category="sys" name="CompanyLabel" value="Company:"/>
+  <property category="sys" name="Copyright" value="Copyright (c) 2004"/>
+  <property category="sys" name="CopyrightLabel" value="Copyright:"/>
+  <property category="sys" name="DocPath" value="doc"/>
+  <property category="sys" name="JDK" value="java version 1.4.2_01-b06"/>
+  <property category="sys" name="JvmVersion" value="1.2"/>
+  <property category="sys" name="Libraries" value="axis"/>
+  <property category="sys" name="OutPath" value="classes"/>
+  <property category="sys" name="SourcePath" value="src;test"/>
+  <property category="sys" name="WorkingDirectory" value="."/>
+</project>
\ No newline at end of file