def run
- Util.print_program_information( PRG_NAME,
- PRG_VERSION,
- PRG_DESC,
- PRG_DATE,
- COPYRIGHT,
- CONTACT,
- WWW,
- STDOUT )
+ # Util.print_program_information( PRG_NAME,
+ # PRG_VERSION,
+ # PRG_DESC,
+ # PRG_DATE,
+ # COPYRIGHT,
+ # CONTACT,
+ # WWW,
+ # STDOUT )
begin
cla = CommandLineArguments.new( ARGV )
if ( cla.is_option_set?( PARSE_OUT_DESCRIPITION_OPTION ) )
parse_descriptions = true
end
-
+/*
puts()
puts( "hmmpfam outputfile : " + inpath )
puts( "outputfile : " + outpath )
puts( "Uniprot : " + uniprot )
end
puts()
-
+*/
begin
parse( inpath,
outpath,
end
domain_counts = get_domain_counts()
- puts
+ /* puts
puts( "domain counts (considering potential i-E-value threshold and ignoring of DUFs):" )
puts( "(number of different domains: " + domain_counts.length.to_s + ")" )
puts
puts( Util.draw_histogram( domain_counts, "#" ) )
puts
Util.print_message( PRG_NAME, 'OK' )
- puts
+ puts */
end # def run