public static int[] extractProfile(Hashtable hconsensus,
boolean ignoreGapsInConsensusCalculation)
{
- int[] rtnval = new int[52]; // 2*(5*5)+2
+ int[] rtnval = new int[74]; // 2*(5*5)+2
int[][] profile = (int[][]) hconsensus.get(StructureFrequency.PROFILE);
int[][] pairs = (int[][]) hconsensus
.get(StructureFrequency.PAIRPROFILE);
* Therefore dc gets length 2, to have space for a basepair instead of
* just a single nucleotide
*/
- if (profl.length == 52)
+ if (profl.length == 74)
{
dc = new char[2];
}