-->
<project name="jalviewX" default="usage" basedir=".">
<!-- we use jalopy to format our sources -->
- <taskdef name="jalopy"
- classname="de.hunsicker.jalopy.plugin.ant.AntPlugin">
+ <taskdef name="jalopy" classname="de.hunsicker.jalopy.plugin.ant.AntPlugin">
<classpath>
<fileset dir="utils/jalopy/lib">
<include name="*.jar" />
</classpath>
</taskdef>
- <target name="help" depends="usage"/>
+ <target name="help" depends="usage" />
<target name="usage">
- <echo message="~~~Jalview Ant build.xml Usage~~~~"/>
- <echo message="Targets include:"/>
- <echo message="usage - default target, displays this message"/>
- <echo message="buildindices - generates JavaHelpSearch from the help files"/>
- <echo message="build - compiles all necessary files for Application"/>
- <echo message="makedist - compiles and places all necessary jar files into directory dist"/>
- <echo message="makefulldist - signs all jar files and builds jnlp file for full distribution"/>
- <echo message=" this needs a keystore and key. See docs/building.html for more information."/>
- <echo message="compileApplet - compiles all necessary files for Applet"/>
- <echo message="makeApplet - compiles, then packages and obfuscates the Applet"/>
- <echo message="See docs/building.html and the comments in build file for other targets."/>
- <echo message="note: compile and makeApplet require the property java118.home to be set to point to a java 1.1.8 jdk."/>
- <echo message="Useful -D flags: -Ddonotobfuscate will prevent applet obfuscation"/>
+ <echo message="~~~Jalview Ant build.xml Usage~~~~" />
+ <echo message="Targets include:" />
+ <echo message="usage - default target, displays this message" />
+ <echo message="buildindices - generates JavaHelpSearch from the help files" />
+ <echo message="build - compiles all necessary files for Application" />
+ <echo message="makedist - compiles and places all necessary jar files into directory dist" />
+ <echo message="makefulldist - signs all jar files and builds jnlp file for full distribution" />
+ <echo message=" this needs a keystore and key. See docs/building.html for more information." />
+ <echo message="compileApplet - compiles all necessary files for Applet" />
+ <echo message="makeApplet - compiles, then packages and obfuscates the Applet" />
+ <echo message="See docs/building.html and the comments in build file for other targets." />
+ <echo message="note: compile and makeApplet require the property java118.home to be set to point to a java 1.1.8 jdk." />
+ <echo message="Useful -D flags: -Ddonotobfuscate will prevent applet obfuscation" />
</target>
</fileset> -->
</path>
<!-- Jalview Version String displayed by application on startup and used to check for updates -->
- <property name="JALVIEW_VERSION" value="DEVELOPMENT"/>
+ <property name="JALVIEW_VERSION" value="DEVELOPMENT" />
<!-- 2.4 (VAMSAS)" -->
<!-- Include debugging information in javac true or false -->
- <property name="javac.debug" value="true"/>
+ <property name="javac.debug" value="true" />
<!-- JarSigner Key Store for Webstart Distribution -->
- <property name="jalview.keystore" value="./keys/.keystore"/>
+ <property name="jalview.keystore" value="./keys/.keystore" />
<!-- Keystore Password -->
- <property name="jalview.keystore.pass" value="alignmentisfun"/>
+ <property name="jalview.keystore.pass" value="alignmentisfun" />
<!-- Key Name -->
- <property name="jalview.key" value="jalview"/>
+ <property name="jalview.key" value="jalview" />
<!-- Key Password -->
- <property name="jalview.key.pass" value="alignmentisfun"/>
+ <property name="jalview.key.pass" value="alignmentisfun" />
<!-- Don't change anything below here unless you know what you are doing! -->
<!-- Url path for WebStart in JNLP file -->
- <property name="WebStartLocation" value="http://www.jalview.org/webstart"/>
+ <property name="WebStartLocation" value="http://www.jalview.org/webstart" />
<!-- build directory configuration -->
- <property name="libDir" value="lib"/>
- <property name="resourceDir" value="resources"/>
- <property name="helpDir" value="help"/>
- <property name="docDir" value="doc"/>
+ <property name="libDir" value="lib" />
+ <property name="resourceDir" value="resources" />
+ <property name="helpDir" value="help" />
+ <property name="docDir" value="doc" />
<property name="sourceDir" value="src" />
<property name="schemaDir" value="schemas" />
<property name="outputDir" value="classes" />
<property name="outputJar" value="jalview.jar" />
<!-- Jalview Applet JMol Jar Dependency -->
<property name="jmolJar" value="JmolApplet-12.1.11_dev.jar" />
- <property name="jalviewLiteJar" value="jalviewApplet.jar"/>
+ <property name="jalviewLiteJar" value="jalviewApplet.jar" />
<!-- switch to indicate if we should obfuscate jalviewLite -->
<!--<property name="donotobfuscate" value="true"/> -->
<!-- the class path for building the application -->
<path id="build.classpath">
<fileset dir="utils">
- <include name="*.jar"/>
- <include name="**/*.jar"/>
+ <include name="*.jar" />
+ <include name="**/*.jar" />
</fileset>
<fileset dir="${libDir}">
- <include name="*.jar"/>
- <include name="**/*.jar"/>
+ <include name="*.jar" />
+ <include name="**/*.jar" />
+ </fileset>
+ <fileset dir="appletlib">
+ <!-- the JmolApplet includes the JmolApplet console and the application javac seems to always try and build all packages
+ -->
+ <include name="${jmolJar}" />
</fileset>
</path>
- <property name="source.dist.name" value="${basedir}/jalview-src.tar.gz"/>
+ <property name="source.dist.name" value="${basedir}/jalview-src.tar.gz" />
<!-- The Location of the java 1.1.8 jdk -->
<property name="java118.home" value="C:\Sun\jdk1.1.8" />
- <property name="applet.jre.tools" value="${java118.home}/lib/classes.zip"/>
+ <property name="applet.jre.tools" value="${java118.home}/lib/classes.zip" />
<!-- jre for 1.4 version
<property name="applet.jre.tools" value="${java.home}/lib/rt.jar"/>
-->
<!-- the classpath for building the 1.1 applet -->
<path id="jalviewlite.deps">
<fileset dir="${java118.home}">
- <include name="lib/classes.zip"/>
+ <include name="lib/classes.zip" />
</fileset>
- <pathelement location="appletlib/${jmolJar}"/>
+ <pathelement location="appletlib/${jmolJar}" />
</path>
</target>
- <taskdef classpath="utils/roxes-ant-tasks-1.2-2004-01-30.jar" resource="com/roxes/tools/ant/taskdefs.properties"/>
+ <taskdef classpath="utils/roxes-ant-tasks-1.2-2004-01-30.jar" resource="com/roxes/tools/ant/taskdefs.properties" />
<target name="buildPropertiesFile" depends="init">
<tstamp prefix="build">
- <format property="date" pattern="dd MMMM yyyy"/>
+ <format property="date" pattern="dd MMMM yyyy" />
</tstamp>
<properties file="${outputDir}/.build_properties">
<header>
---Jalview Build Details---
</header>
- <property name="VERSION" value="${JALVIEW_VERSION}"/>
- <property name="BUILD_DATE" value="${build.date}"/>
+ <property name="VERSION" value="${JALVIEW_VERSION}" />
+ <property name="BUILD_DATE" value="${build.date}" />
</properties>
</target>
<target name="clean" depends="init">
<!-- not efficient yet. -->
- <delete dir="${outputDir}"/>
+ <delete dir="${outputDir}" />
</target>
<target name="distclean" depends="init, clean">
- <echo message="REMOVING ALL BACKUP/AUTOSAVES!"/>
+ <echo message="REMOVING ALL BACKUP/AUTOSAVES!" />
<delete>
<fileset dir=".">
- <include name="${outputJar}"/>
- <include name="#*#"/>
- <include name="#*.*#"/>
- <include name="**/#*#"/>
- <include name="**/#*.*#"/>
- <include name="*~"/>
- <include name="*.*~"/>
- <include name="**/*~"/>
- <include name="**/*.*~"/>
+ <include name="${outputJar}" />
+ <include name="#*#" />
+ <include name="#*.*#" />
+ <include name="**/#*#" />
+ <include name="**/#*.*#" />
+ <include name="*~" />
+ <include name="*.*~" />
+ <include name="**/*~" />
+ <include name="**/*.*~" />
</fileset>
</delete>
</target>
<target name="prepare" depends="init">
- <mkdir dir="${outputDir}"/>
+ <mkdir dir="${outputDir}" />
<copy todir="${outputDir}">
<fileset dir=".">
- <include name="${docDir}/**/*.*"/>
- <include name="${helpDir}/**/*.*"/>
- <include name="${libDir}/*.jar"/>
+ <include name="${docDir}/**/*.*" />
+ <include name="${helpDir}/**/*.*" />
+ <include name="${libDir}/*.jar" />
</fileset>
<fileset dir="${resourceDir}">
- <include name="**/*.*"/>
+ <include name="**/*.*" />
</fileset>
</copy>
</target>
<target name="build" depends="prepare">
<!-- not efficient yet. -->
- <javac source="1.5" target="1.5"
- srcdir ="${sourceDir}"
- destdir="${outputDir}"
- debug="${javac.debug}"
- classpathref="build.classpath">
- <exclude name="jalview/*applet*"/>
- <exclude name="jalview/appletgui/**"/>
- <exclude name="com/stevesoft/**"/>
+ <javac source="1.5" target="1.5" srcdir="${sourceDir}" destdir="${outputDir}" debug="${javac.debug}" classpathref="build.classpath">
+ <exclude name="jalview/*applet*" />
+ <exclude name="jalview/appletgui/**" />
+ <exclude name="com/stevesoft/**" />
</javac>
</target>
- <target name="buildindices" depends="init, prepare"
- unless="help.uptodate">
- <java
- classname="com.sun.java.help.search.Indexer"
- classpathref="build.classpath"
- fork="true"
- dir="${outputDir}/${helpDir}"
- >
- <arg line="html"/>
+ <target name="buildindices" depends="init, prepare" unless="help.uptodate">
+ <java classname="com.sun.java.help.search.Indexer" classpathref="build.classpath" fork="true" dir="${outputDir}/${helpDir}">
+ <arg line="html" />
</java>
</target>
-->
</information>
<resources>
- <j2se version="1.5+" initial_heap_size="10M"/>
+ <j2se version="1.5+" initial_heap_size="10M" />
<fileset dir="${packageDir}">
<include name="jalview.jar" />
</fileset>
</security>
</jnlp>
<!-- the rest of these jnlp tasks are copy and pastes of the above but with different Vm args -->
- <jnlp toFile="${packageDir}/jalview_1G.jnlp" codebase="${WebStartLocation}">
- <information>
- <title>Jalview</title>
- <vendor>The Barton Group</vendor>
- <homepage href="http://www.jalview.org" />
- <description>Jalview Multiple Alignment Editor</description>
- <description kind="short">Jalview</description>
- <icon href="logo_big.gif" />
- <offline_allowed />
- <!--
+ <jnlp toFile="${packageDir}/jalview_1G.jnlp" codebase="${WebStartLocation}">
+ <information>
+ <title>Jalview</title>
+ <vendor>The Barton Group</vendor>
+ <homepage href="http://www.jalview.org" />
+ <description>Jalview Multiple Alignment Editor</description>
+ <description kind="short">Jalview</description>
+ <icon href="logo_big.gif" />
+ <offline_allowed />
+ <!--
<association mime-type="application-x/ext-file" extensions="fa"/>
<association mime-type="application-x/ext-file" extensions="fasta"/>
<association mime-type="application-x/ext-file" extensions="fastq"/>
<association mime-type="application-x/ext-file" extensions="pir"/>
<association mime-type="application-x/ext-file" extensions="amsa"/>
-->
- </information>
- <resources>
- <j2se version="1.5+" initial_heap_size="64M" max_heap_size="512M"/>
- <fileset dir="${packageDir}">
- <include name="jalview.jar" />
- </fileset>
- <fileset dir="${packageDir}">
- <include name="*.jar" />
- <include name="*_*.jar" />
- <exclude name="jalview.jar" />
- </fileset>
- <property name="jalview.version" value="${JALVIEW_VERSION}" />
- </resources>
- <application_desc main_class="jalview.bin.Jalview">
- </application_desc>
- <security>
- <all_permissions />
- </security>
- </jnlp>
- <jnlp toFile="${packageDir}/jalview_2G.jnlp" codebase="${WebStartLocation}">
- <information>
- <title>Jalview</title>
- <vendor>The Barton Group</vendor>
- <homepage href="http://www.jalview.org" />
- <description>Jalview Multiple Alignment Editor</description>
- <description kind="short">Jalview</description>
- <icon href="logo_big.gif" />
- <offline_allowed />
- <!--
+ </information>
+ <resources>
+ <j2se version="1.5+" initial_heap_size="64M" max_heap_size="512M" />
+ <fileset dir="${packageDir}">
+ <include name="jalview.jar" />
+ </fileset>
+ <fileset dir="${packageDir}">
+ <include name="*.jar" />
+ <include name="*_*.jar" />
+ <exclude name="jalview.jar" />
+ </fileset>
+ <property name="jalview.version" value="${JALVIEW_VERSION}" />
+ </resources>
+ <application_desc main_class="jalview.bin.Jalview">
+ </application_desc>
+ <security>
+ <all_permissions />
+ </security>
+ </jnlp>
+ <jnlp toFile="${packageDir}/jalview_2G.jnlp" codebase="${WebStartLocation}">
+ <information>
+ <title>Jalview</title>
+ <vendor>The Barton Group</vendor>
+ <homepage href="http://www.jalview.org" />
+ <description>Jalview Multiple Alignment Editor</description>
+ <description kind="short">Jalview</description>
+ <icon href="logo_big.gif" />
+ <offline_allowed />
+ <!--
<association mime-type="application-x/ext-file" extensions="fa"/>
<association mime-type="application-x/ext-file" extensions="fasta"/>
<association mime-type="application-x/ext-file" extensions="fastq"/>
<association mime-type="application-x/ext-file" extensions="pir"/>
<association mime-type="application-x/ext-file" extensions="amsa"/>
-->
- </information>
- <resources>
- <j2se version="1.5+" initial_heap_size="256M" max_heap_size="1024M"/>
- <fileset dir="${packageDir}">
- <include name="jalview.jar" />
- </fileset>
- <fileset dir="${packageDir}">
- <include name="*.jar" />
- <include name="*_*.jar" />
- <exclude name="jalview.jar" />
- </fileset>
- <property name="jalview.version" value="${JALVIEW_VERSION}" />
- </resources>
- <application_desc main_class="jalview.bin.Jalview">
- </application_desc>
- <security>
- <all_permissions />
- </security>
- </jnlp>
-
- </target>
-
- <target name="runenv" depends="init">
- <path id="run.classpath">
- <pathelement location="${outputDir}"/>
- <fileset dir="${outputDir}">
- <include name="${libDir}/*.jar"/>
- </fileset>
- </path>
- <pathconvert targetos="unix" refid="run.classpath" property="run.classpath"/>
-
- <echo>java -classpath ${run.classpath} jalview.bin.Jalview
+ </information>
+ <resources>
+ <j2se version="1.5+" initial_heap_size="256M" max_heap_size="1024M" />
+ <fileset dir="${packageDir}">
+ <include name="jalview.jar" />
+ </fileset>
+ <fileset dir="${packageDir}">
+ <include name="*.jar" />
+ <include name="*_*.jar" />
+ <exclude name="jalview.jar" />
+ </fileset>
+ <property name="jalview.version" value="${JALVIEW_VERSION}" />
+ </resources>
+ <application_desc main_class="jalview.bin.Jalview">
+ </application_desc>
+ <security>
+ <all_permissions />
+ </security>
+ </jnlp>
+
+ </target>
+
+ <target name="runenv" depends="init">
+ <path id="run.classpath">
+ <pathelement location="${outputDir}" />
+ <fileset dir="${outputDir}">
+ <include name="${libDir}/*.jar" />
+ </fileset>
+ </path>
+ <pathconvert targetos="unix" refid="run.classpath" property="run.classpath" />
+
+ <echo>java -classpath ${run.classpath} jalview.bin.Jalview
</echo>
- </target>
-
- <target name="buildextclients" depends="init">
- <input message="Building external client source from WSDLs - Do you really want to do this ? (Yy/Nn)"
- validargs="Y,y,n,N" defaultvalue="N"
- addproperty="doextbuild.response"/>
- <condition property="dontextbuild">
- <equals arg1="n" arg2="${doextbuild.response}"/>
- </condition>
- <condition property="dontextbuild">
- <equals arg1="N" arg2="${doextbuild.response}"/>
- </condition>
- <fail if="dontextbuild">
+ </target>
+
+ <target name="buildextclients" depends="init">
+ <input message="Building external client source from WSDLs - Do you really want to do this ? (Yy/Nn)" validargs="Y,y,n,N" defaultvalue="N" addproperty="doextbuild.response" />
+ <condition property="dontextbuild">
+ <equals arg1="n" arg2="${doextbuild.response}" />
+ </condition>
+ <condition property="dontextbuild">
+ <equals arg1="N" arg2="${doextbuild.response}" />
+ </condition>
+ <fail if="dontextbuild">
Build External Client Code process aborted by user. Jalview source is unchanged.
</fail>
- <!-- Currently, this doesn't happen automatically.
+ <!-- Currently, this doesn't happen automatically.
1. Run WSDL2Java as below, which generates an ext.vamsas +
vamsas.<datapackages> fileset.
2. refactor ext.vamsas.SpecificserviceWS* to
might be using.
-->
- <path id="axisbuild">
- <path refid="build.classpath"/>
- </path>
- <taskdef resource="axis-tasks.properties" classpathref="axisbuild"/>
- <move todir="./bak">
- <fileset dir="${sourceDir}" id="client">
- <include name="${wsdl.ClientNS}/*.*"/>
- </fileset>
- </move>
-
- <axis-wsdl2java
- output="${sourceDir}"
- verbose="true"
- url="${wsdl.MsaWS2}"
- serverside="false"
- deployscope="Request"
- debug="false"
- helpergen="true"
- all="true"
- >
- <mappingSet>
- <mapping
- namespace="${wsdl.Namespace}"
- package="${wsdl.ClientNS}"
- />
- <mapping namespace="http://dataTypes.vamsas"
- package="${wsdl.ClientNS}"/>
- </mappingSet>
- </axis-wsdl2java>
- </target>
-
- <target name="makedist" depends="build, buildPropertiesFile, buildindices">
- <!-- make the package jar -->
- <mkdir dir="${packageDir}"/>
-
- <jar destfile="${packageDir}/${outputJar}">
- <manifest>
- <attribute name="Main-Class" value="jalview.bin.Jalview"/>
- </manifest>
- <fileset dir="${outputDir}/">
- <exclude name="cache*/**"/>
- <exclude name="*.jar" />
- <exclude name="*.jar.*" />
- <exclude name="**/*.jar" />
- <exclude name="**/*.jar.*" />
- </fileset>
- </jar>
-
- <copy toDir="${packageDir}" flatten="true">
- <fileset dir="${outputDir}">
- <include name="*.jar"/>
- <include name="**/*.jar"/>
- </fileset>
- </copy>
- </target>
-
-
- <!-- jalopy code reformatter -->
- <target name="sourcescrub" depends="init,build">
- <jalopy destdir="jsrc" classpathref="run.classpath"
- convention="jalview-jalopy.xml">
- <fileset dir="${sourceDir}">
- <include name="*.java"/>
- <include name="**/*.java"/>
- <include name="**/**/*.java"/>
- </fileset>
- </jalopy>
- </target>
-
-
-
- <!-- Compile, package and obfuscate Jalview Applet -->
- <target name="makeApplet" depends="obfuscate"/>
-
- <target name="compileApplet" depends="init,clean">
- <mkdir dir="${outputDir}"/>
- <javac source="1.5"
- target="1.5"
- srcdir="${sourceDir}"
- destdir="${outputDir}"
- debug="${javac.debug}"
- classpath="appletlib/${jmolJar}"
- includes="jalview/appletgui/**"
- excludes="ext/**,MCview/**,org/**,vamsas/**"
- />
- </target>
-
- <target name="packageApplet" depends="compileApplet, buildPropertiesFile">
- <copy file="${resourceDir}/images/idwidth.gif" toFile="${outputDir}/images/idwidth.gif"/>
- <copy file="${resourceDir}/images/link.gif" toFile="${outputDir}/images/link.gif"/>
- <jar destfile="in.jar">
- <manifest>
- <attribute name="Main-Class" value="jalview.bin.JalviewLite"/>
- </manifest>
- <fileset dir="${outputDir}">
- <include name="com/**"/>
- <include name="MCview/**"/>
- <include name="jalview/**"/>
- <include name=".build_properties"/>
- <include name="images/idwidth.gif"/>
- <include name="images/link.gif"/>
- </fileset>
- </jar>
- </target>
- <target name="obfuscate" depends="-obfuscatefake,-obfuscatereally" description="construct the final jalviewLite applet jar with or without obfuscation">
- </target>
- <target name="-obfuscatefake" depends="packageApplet" if="donotobfuscate">
- <copy file="in.jar" tofile="${jalviewLiteJar}" overwrite="true"/>
- <delete file="in.jar"/>
- </target>
- <target name="-obfuscatereally" unless="donotobfuscate">
-
- <path id="obfuscateDeps.path">
- <pathelement location="${applet.jre.tools}"/>
- <pathelement location="appletlib/${jmolJar}"/>
- </path>
- <taskdef resource="proguard/ant/task.properties" classpath="utils/proguard.jar" />
-
- <proguard>
- <injar file="in.jar"/>
- <outjar file="${jalviewLiteJar}"/>
- <libraryjar refid="obfuscateDeps.path"/>
- <keep access="public" type="class"
- name="jalview.bin.JalviewLite">
- <field access="public"/>
- <method access="public"/>
- <constructor access="public"/>
- </keep>
- <!-- -libraryjars "${obfuscateDeps}"
+ <path id="axisbuild">
+ <path refid="build.classpath" />
+ </path>
+ <taskdef resource="axis-tasks.properties" classpathref="axisbuild" />
+ <move todir="./bak">
+ <fileset dir="${sourceDir}" id="client">
+ <include name="${wsdl.ClientNS}/*.*" />
+ </fileset>
+ </move>
+
+ <axis-wsdl2java output="${sourceDir}" verbose="true" url="${wsdl.MsaWS2}" serverside="false" deployscope="Request" debug="false" helpergen="true" all="true">
+ <mappingSet>
+ <mapping namespace="${wsdl.Namespace}" package="${wsdl.ClientNS}" />
+ <mapping namespace="http://dataTypes.vamsas" package="${wsdl.ClientNS}" />
+ </mappingSet>
+ </axis-wsdl2java>
+ </target>
+
+ <target name="makedist" depends="build, buildPropertiesFile, buildindices">
+ <!-- make the package jar -->
+ <mkdir dir="${packageDir}" />
+
+ <jar destfile="${packageDir}/${outputJar}">
+ <manifest>
+ <attribute name="Main-Class" value="jalview.bin.Jalview" />
+ </manifest>
+ <fileset dir="${outputDir}/">
+ <exclude name="cache*/**" />
+ <exclude name="*.jar" />
+ <exclude name="*.jar.*" />
+ <exclude name="**/*.jar" />
+ <exclude name="**/*.jar.*" />
+ </fileset>
+ </jar>
+
+ <copy toDir="${packageDir}" flatten="true">
+ <fileset dir="${outputDir}">
+ <include name="*.jar" />
+ <include name="**/*.jar" />
+ </fileset>
+ </copy>
+ </target>
+
+
+ <!-- jalopy code reformatter -->
+ <target name="sourcescrub" depends="init,build">
+ <jalopy destdir="jsrc" classpathref="run.classpath" convention="jalview-jalopy.xml">
+ <fileset dir="${sourceDir}">
+ <include name="*.java" />
+ <include name="**/*.java" />
+ <include name="**/**/*.java" />
+ </fileset>
+ </jalopy>
+ </target>
+
+
+
+ <!-- Compile, package and obfuscate Jalview Applet -->
+ <target name="makeApplet" depends="obfuscate" />
+
+ <target name="compileApplet" depends="init,clean">
+ <mkdir dir="${outputDir}" />
+ <javac source="1.5" target="1.5" srcdir="${sourceDir}" destdir="${outputDir}" debug="${javac.debug}" classpath="appletlib/${jmolJar}" includes="jalview/appletgui/**" excludes="ext/**,MCview/**,org/**,vamsas/**" />
+ </target>
+
+ <target name="packageApplet" depends="compileApplet, buildPropertiesFile">
+ <copy file="${resourceDir}/images/idwidth.gif" toFile="${outputDir}/images/idwidth.gif" />
+ <copy file="${resourceDir}/images/link.gif" toFile="${outputDir}/images/link.gif" />
+ <jar destfile="in.jar">
+ <manifest>
+ <attribute name="Main-Class" value="jalview.bin.JalviewLite" />
+ </manifest>
+ <fileset dir="${outputDir}">
+ <include name="com/**" />
+ <include name="MCview/**" />
+ <include name="jalview/**" />
+ <include name=".build_properties" />
+ <include name="images/idwidth.gif" />
+ <include name="images/link.gif" />
+ </fileset>
+ </jar>
+ </target>
+ <target name="obfuscate" depends="-obfuscatefake,-obfuscatereally" description="construct the final jalviewLite applet jar with or without obfuscation">
+ </target>
+ <target name="-obfuscatefake" depends="packageApplet" if="donotobfuscate">
+ <copy file="in.jar" tofile="${jalviewLiteJar}" overwrite="true" />
+ <delete file="in.jar" />
+ </target>
+ <target name="-obfuscatereally" unless="donotobfuscate">
+
+ <path id="obfuscateDeps.path">
+ <pathelement location="${applet.jre.tools}" />
+ <pathelement location="appletlib/${jmolJar}" />
+ </path>
+ <taskdef resource="proguard/ant/task.properties" classpath="utils/proguard.jar" />
+
+ <proguard>
+ <injar file="in.jar" />
+ <outjar file="${jalviewLiteJar}" />
+ <libraryjar refid="obfuscateDeps.path" />
+ <keep access="public" type="class" name="jalview.bin.JalviewLite">
+ <field access="public" />
+ <method access="public" />
+ <constructor access="public" />
+ </keep>
+ <!-- -libraryjars "${obfuscateDeps}"
-injars in.jar
-outjars jalviewApplet.jar
-keep public class jalview.bin.JalviewLite
{ public * ; } -->
- </proguard>
- <delete file="in.jar"/>
- </target>
-
- <target name="castorbinding" depends="init" description="Generate Java bindings to supported Jalview XML models.">
- <taskdef name="castor-srcgen"
- classname="org.castor.anttask.CastorCodeGenTask"
- classpathref="build.classpath" />
- <delete>
- <fileset dir="${sourceDir}/jalview/schemabinding/version2">
- <include name="*.java"/>
- <include name="descriptors/*.java"/>
- </fileset>
- </delete>
- <castor-srcgen file="${schemaDir}/vamsas.xsd"
- todir="${sourceDir}"
- package="jalview.schemabinding.version2"
- warnings="false"
- nodesc="false"
- verbose="true"
- properties="${schemaDir}/jalview.properties"
- />
- <castor-srcgen file="${schemaDir}/JalviewUserColours.xsd"
- todir="${sourceDir}"
- package="jalview.schemabinding.version2"
- warnings="false"
- nodesc="false"
- verbose="true"
- properties="${schemaDir}/jalview.properties"
- />
- <castor-srcgen file="${schemaDir}/JalviewWsParamSet.xsd"
- todir="${sourceDir}"
- package="jalview.schemabinding.version2"
- warnings="false"
- nodesc="false"
- verbose="true"
- properties="${schemaDir}/jalview.properties"
- />
- <castor-srcgen file="${schemaDir}/jalview.xsd"
- todir="${sourceDir}"
- package="jalview.schemabinding.version2"
- warnings="false"
- nodesc="false"
- verbose="true"
- properties="${schemaDir}/jalview.properties"
-
- />
- <!--
+ </proguard>
+ <delete file="in.jar" />
+ </target>
+
+ <target name="castorbinding" depends="init" description="Generate Java bindings to supported Jalview XML models.">
+ <taskdef name="castor-srcgen" classname="org.castor.anttask.CastorCodeGenTask" classpathref="build.classpath" />
+ <delete>
+ <fileset dir="${sourceDir}/jalview/schemabinding/version2">
+ <include name="*.java" />
+ <include name="descriptors/*.java" />
+ </fileset>
+ </delete>
+ <castor-srcgen file="${schemaDir}/vamsas.xsd" todir="${sourceDir}" package="jalview.schemabinding.version2" warnings="false" nodesc="false" verbose="true" properties="${schemaDir}/jalview.properties" />
+ <castor-srcgen file="${schemaDir}/JalviewUserColours.xsd" todir="${sourceDir}" package="jalview.schemabinding.version2" warnings="false" nodesc="false" verbose="true" properties="${schemaDir}/jalview.properties" />
+ <castor-srcgen file="${schemaDir}/JalviewWsParamSet.xsd" todir="${sourceDir}" package="jalview.schemabinding.version2" warnings="false" nodesc="false" verbose="true" properties="${schemaDir}/jalview.properties" />
+ <castor-srcgen file="${schemaDir}/jalview.xsd" todir="${sourceDir}" package="jalview.schemabinding.version2" warnings="false" nodesc="false" verbose="true" properties="${schemaDir}/jalview.properties" />
+ <!--
now build the jalview.binding package with the old schema set
-->
- <delete>
- <fileset dir="${sourceDir}/jalview/binding/">
- <include name="**"/>
- </fileset>
- </delete>
- <castor-srcgen file="${schemaDir}/vamsasJvV1.xsd"
- todir="${sourceDir}"
- package="jalview.binding"
- warnings="false"
- nodesc="true"
- verbose="true"
- properties="${schemaDir}/jalview.nodesc.properties"
- />
- <castor-srcgen file="${schemaDir}/JalviewUserColours.xsd"
- todir="${sourceDir}"
- package="jalview.binding"
- warnings="false"
- nodesc="true"
- verbose="true"
- properties="${schemaDir}/jalview.nodesc.properties"
- />
- <castor-srcgen file="${schemaDir}/jalviewJvV1.xsd"
- todir="${sourceDir}"
- package="jalview.binding"
- warnings="false"
- nodesc="true"
- verbose="true"
- properties="${schemaDir}/jalview.nodesc.properties"
- />
- </target>
- <target name="sourcedist" description="create jalview source distribution" depends="init">
- <delete file="${source.dist.name}"/>
- <tar destfile="${source.dist.name}" compression="gzip">
- <tarfileset dir="./" prefix="jalview" preserveLeadingSlashes="true">
- <include name="LICENSE"/>
- <include name="README"/>
- <include name="build.xml"/>
- <include name="jalview-jalopy.xml"/>
- <include name="JalviewApplet.jpx"/>
- <include name="JalviewX.jpx"/>
- <include name="${sourceDir}/*.java"/>
- <include name="${sourceDir}/**/*.java"/>
- <include name="${sourceDir}/**/*.cdr"/>
- <include name="${libDir}/**/*"/>
- <include name="${resourceDir}/**/*"/>
- <include name="${helpDir}/**/*"/>
- <include name="appletlib/${jmolJar}"/>
- <exclude name="**/*locales"/>
- <exclude name="*locales/**"/>
- <exclude name="utils/InstallAnywhere/**Build.iap_xml"/>
- <exclude name="utils/InstallAnywhere/**Build*/**"/>
- <exclude name="utils/InstallAnywhere/**Build*/**"/>
- <exclude name="utils/InstallAnywhere/**locale*"/>
- <exclude name="utils/InstallAnywhere/**locale*/**"/>
- <include name="${schemaDir}/**/*"/>
- <include name="utils/**/*"/>
- <include name="${docDir}/**/*"/>
- </tarfileset>
- </tar>
- </target>
- </project>
+ <delete>
+ <fileset dir="${sourceDir}/jalview/binding/">
+ <include name="**" />
+ </fileset>
+ </delete>
+ <castor-srcgen file="${schemaDir}/vamsasJvV1.xsd" todir="${sourceDir}" package="jalview.binding" warnings="false" nodesc="true" verbose="true" properties="${schemaDir}/jalview.nodesc.properties" />
+ <castor-srcgen file="${schemaDir}/JalviewUserColours.xsd" todir="${sourceDir}" package="jalview.binding" warnings="false" nodesc="true" verbose="true" properties="${schemaDir}/jalview.nodesc.properties" />
+ <castor-srcgen file="${schemaDir}/jalviewJvV1.xsd" todir="${sourceDir}" package="jalview.binding" warnings="false" nodesc="true" verbose="true" properties="${schemaDir}/jalview.nodesc.properties" />
+ </target>
+ <target name="sourcedist" description="create jalview source distribution" depends="init">
+ <delete file="${source.dist.name}" />
+ <tar destfile="${source.dist.name}" compression="gzip">
+ <tarfileset dir="./" prefix="jalview" preserveLeadingSlashes="true">
+ <include name="LICENSE" />
+ <include name="README" />
+ <include name="build.xml" />
+ <include name="jalview-jalopy.xml" />
+ <include name="JalviewApplet.jpx" />
+ <include name="JalviewX.jpx" />
+ <include name="${sourceDir}/*.java" />
+ <include name="${sourceDir}/**/*.java" />
+ <include name="${sourceDir}/**/*.cdr" />
+ <include name="${libDir}/**/*" />
+ <include name="${resourceDir}/**/*" />
+ <include name="${helpDir}/**/*" />
+ <include name="appletlib/${jmolJar}" />
+ <exclude name="**/*locales" />
+ <exclude name="*locales/**" />
+ <exclude name="utils/InstallAnywhere/**Build.iap_xml" />
+ <exclude name="utils/InstallAnywhere/**Build*/**" />
+ <exclude name="utils/InstallAnywhere/**Build*/**" />
+ <exclude name="utils/InstallAnywhere/**locale*" />
+ <exclude name="utils/InstallAnywhere/**locale*/**" />
+ <include name="${schemaDir}/**/*" />
+ <include name="utils/**/*" />
+ <include name="${docDir}/**/*" />
+ </tarfileset>
+ </tar>
+ </target>
+</project>
git://source.jalview.org / jalview.git / commitdiff