= Gene tree Preprocessing =
-Usage:
-java -Xms32m -Xmx1024m -cp
-path/to/forester.jar org.forester.application.gene_tree_preprocess <input tree in NH, NHX, Nexus, or phyloXML>
+== Usage ==
+`java -Xmx1024m -cp
+path/to/forester.jar org.forester.application.gene_tree_preprocess <input tree in NH, NHX, Nexus, or phyloXML>`
+== Details ==
-
-
-= Details =
-
-Add your content here. Format your content with:
- * Text in *bold* or _italic_
- * Headings, paragraphs, and lists
- * Automatic links to other wiki pages
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+Output is two files:
+ * <input>_preprocessed_gene_tree.phylo.xml
+ * <input>_removed_nodes.txt
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