JAL-961 efficiency TODO: decouple overview updates from sequence colour broadcasts

diff --git a/src/jalview/appletgui/AlignmentPanel.java b/src/jalview/appletgui/AlignmentPanel.java
index 463c6c3..fd6652b 100644 (file)
--- a/src/jalview/appletgui/AlignmentPanel.java
+++ b/src/jalview/appletgui/AlignmentPanel.java
@@ -953,6 +953,7 @@ public class AlignmentPanel extends Panel implements AdjustmentListener,
 
     if (updateOverview)
     {
+      // TODO: determine if this paintAlignment changed structure colours
       jalview.structure.StructureSelectionManager
               .getStructureSelectionManager(av.applet)
               .sequenceColoursChanged(this);

diff --git a/src/jalview/gui/AlignmentPanel.java b/src/jalview/gui/AlignmentPanel.java
index e29a0e2..1b93f10 100644 (file)
--- a/src/jalview/gui/AlignmentPanel.java
+++ b/src/jalview/gui/AlignmentPanel.java
@@ -851,6 +851,7 @@ public class AlignmentPanel extends GAlignmentPanel implements
 
     if (updateOverview)
     {
+      // TODO: determine if this paintAlignment changed structure colours
       av.getStructureSelectionManager().sequenceColoursChanged(this);
 
       if (overviewPanel != null)