package jalview.ext.archaeopteryx;
import jalview.analysis.TreeBuilder;
+import jalview.bin.Cache;
import jalview.datamodel.SequenceI;
import jalview.ext.treeviewer.ExternalTreeBuilderI;
import jalview.ext.treeviewer.ExternalTreeViewerBindingI;
*/
public final class AptxInit
{
+ // yet to add user preferred config
private final static Configuration APTX_CONFIG = new Configuration(
- "_aptx_jalview_configuration_file",
+ Cache.getDefault("APTXCONFIG",
+ "resources/_aptx_jalview_configuration_file.txt"),
false, false, false);
private final static boolean VALIDATE_PHYLOXML_XSD = APTX_CONFIG