update annotation when group state is changed

diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java
index 1fb4a3b..d0cfc63 100755 (executable)
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -940,6 +940,7 @@ public class PopupMenu extends JPopupMenu
    */
   void refresh()
   {
+    ap.updateAnnotation();
     ap.paintAlignment(true);
 
     PaintRefresher.Refresh(this, ap.av.getSequenceSetId());