generated by submitting an existing set of sequences to one of the\r
alignment or prediction web services, and when sequences are copied\r
and pasted into other alignment windows.</p>\r
+<p><strong>View→Show Sequence Features</strong></p>\r
+<p>Toggle the display of sequence features in this alignment. If\r
+feature retrieval has not already been carried out, then Jalview will\r
+automatically try to fetch sequence features (as described below).</p>\r
+<p><strong>View→Sequence Feature Settings...</strong>\r
+<p>Once sequence features have been loaded, their display can be fully\r
+ controlled using the alignment window's <a\r
+ href="featuresettings.html">Sequence Feature Settings</a> dialog\r
+ box. Feature colour schemes and display parameters are unique to a\r
+ particular alignment, so it is possible to colour the same sequence\r
+ features differently in different alignment views.</p>\r
<p><strong>View→Fetch Sequence Features</strong></p>\r
-<p>When this option is selected, sequence features extracted from the <a href="http://www.ebi.uniprot.org/">Uniprot</a> \r
+<p>When this option is selected, sequence features extracted from the\r
+ <a href="http://www.ebi.uniprot.org/index.html">Uniprot (http://www.ebi.unprot.org/index.html)</a> \r
record for each sequence are displayed on the alignment.</p>\r
<p>Jalview will attempt to retrieve sequence features from Uniprot files using \r
the EBI dbFetch web service using the given sequence names (or\r
<p>More information about the feature is given in a tooltip, which is viewed by \r
moving the mouse pointer over a sequence feature. The description associated \r
with the feature will then be displayed in a small label near the pointer.</p>\r
-<p><strong>View→Show Sequence Features</strong></p>\r
-<p>Toggle the display of sequence features in this alignment.</p>\r
-<p><strong>View→Feature Settings...</strong>\r
-<p>Once sequence features have been loaded, their display can be fully\r
- controlled using the alignment window's <a\r
- href="featuresettings.html">Sequence Feature Settings</a> dialog\r
- box. Feature colour schemes and display parameters are unique to a\r
- particular alignment, so it is possible to colour the same sequence\r
- features differently in different alignment views.</p>\r
<p><strong>The Sequence Identification Process</strong>\r
\r
</p>\r