JAL-3982 todo notes

diff --git a/src/jalview/rest/HighlightGenomicRangeEndpoint.java b/src/jalview/rest/HighlightGenomicRangeEndpoint.java
index b0aa435..26b9997 100644 (file)
--- a/src/jalview/rest/HighlightGenomicRangeEndpoint.java
+++ b/src/jalview/rest/HighlightGenomicRangeEndpoint.java
@@ -98,6 +98,12 @@ public class HighlightGenomicRangeEndpoint extends AbstractEndpoint
         }
       }
     }
+    // Currently:
+    // seq is an ENSG.. sequence - so 'mouseOverVamsasSequence' will highlight that position, but not the mapped position(s) in transcripts/products.
+    // a couple of options:
+    // 1. broaden search above to record mapped regions in transcripts and either highlight directly, or add a 'highlight all regions' call to structure selection manager
+    // 2. create a new structureselectionmanager call highlightLocusPosition(..)
+    
     // highlight
     for (SequenceI seq : ssmMap.keySet())
     {