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2023-05-17 Ben SoaresJAL-629 Changed some old -arg to --arg in help docs... tree | commitdiff
2023-05-16 Ben SoaresJAL-629 Finished documentation for new command lines. tree | commitdiff
2023-05-15 Ben SoaresJAL-629 More help text tree | commitdiff
2023-05-13 Ben SoaresJAL-629 launcher shell script uses jalview.bin.Launcher... tree | commitdiff
2023-05-12 Ben SoaresJAL-629 More docs tree | commitdiff
2023-05-11 Ben SoaresJAL-629 Add some shortnames to args. Add Opt.OUTPUT... tree | commitdiff
2023-05-11 Ben SoaresJAL-629 Move clarguments documentation to default.... tree | commitdiff
2023-05-10 Ben SoaresJAL-629 More docs. Usage statement. Adjust some logging... tree | commitdiff
2023-05-09 Ben SoaresJAL-629 Add --seqid for non-subval use, make arg value... tree | commitdiff
2023-05-09 Ben SoaresJAL-629 update a subval for structureviewer in the... tree | commitdiff
2023-05-09 Ben SoaresJAL-629 more docs tree | commitdiff
2023-05-03 Ben SoaresJAL-629 a bit more documentation tree | commitdiff
2023-04-28 Ben SoaresJAL-629 Change colour scheme shortnames to something... tree | commitdiff
2023-04-27 Ben SoaresJAL-629 start of help text tree | commitdiff
2023-01-24 James ProcterMerge branch 'develop' (JAL-4102 2.11.2.6 patch release... features/r2_11_2_alphafold/JAL-2349_JAL-3855 tree | commitdiff
2023-01-23 James ProcterJAL-4104 JAL-4102 update help docs with script to add... Release_2_11_2_6 tree | commitdiff
2022-10-29 Jim ProcterMerge branch 'features/JAL-4061_and_JAL-4062_findselect... tree | commitdiff
2022-10-07 Jim ProcterJAL-4065 update citations for Pfam and Rfam and added... tree | commitdiff
2022-09-15 Jim ProcterJAL-4061 JAL-4062 documentation and button labels.... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'patch/JAL-4036_uniprot_fts_legacy_endpoin... tree | commitdiff
2022-08-08 Jim ProcterJAL-4043 what’s new, updated help images and release... tree | commitdiff
2022-07-26 Ben SoaresJAL-4036 Added text to help about different number... tree | commitdiff
2022-07-25 Ben SoaresJAL-4036 updated help about new UniProt API tree | commitdiff
2022-07-01 Jim ProcterJAL-4036 JAL-4012 note about Uniprot FTS workaround... tree | commitdiff
2022-06-09 Jim ProcterJAL-4012 - JAL-4020 release notes and a bit of ‘trouble... tree | commitdiff
2022-04-18 Jim ProcterJAL-3992 fix path tree | commitdiff
2022-04-13 Jim ProcterJAL-3992 shift+arrow to jump to next gap/residue in... tree | commitdiff
2022-03-09 Jim ProcterJAL-3746 more docs tweaking and release notes tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 updated help doc to remove default browser... tree | commitdiff
2022-03-04 Jim ProcterJAL-3746 structure mapping preference docs for JAL... tree | commitdiff
2022-03-04 Jim ProcterJAL-3608 JAL-3830 simplified command line docs a bit tree | commitdiff
2022-03-04 Ben SoaresJAL-3830 Added new command line usage to docs tree | commitdiff
2022-03-04 Ben SoaresJAL-3608 added to LaF documentation tree | commitdiff
2022-03-02 Jim ProcterJAL-3208 release notes and docs for setprop tree | commitdiff
2022-03-02 Jim ProcterJAL-3746 release notes and cli arg docs for JAL-3530 tree | commitdiff
2022-03-02 Jim ProcterJAL-3746 release notes JAL-3391 JAL-3829 improved 3dbea... tree | commitdiff
2022-02-28 Jim ProcterJAL-3503 2.11.2.0 release notes and docs tree | commitdiff
2022-02-28 Jim ProcterJAL-3746 JAL-3551 update pymol docs and what’s new... tree | commitdiff
2022-02-28 Jim ProcterJAL-3746 document -no-annotation cli arg tree | commitdiff
2022-02-17 Jim ProcterJAL-3746 more release notes and docs: JAL-3863 JAL... tree | commitdiff
2022-02-15 Jim ProcterJAL-3551 pymol documentation tree | commitdiff
2021-12-08 Jim ProcterJAL-3551 pymol docs - work in progress tree | commitdiff
2021-11-05 Ben SoaresJAL-3746 Updated help docs for 3D-Beacons. Added and... tree | commitdiff
2021-09-21 Jim ProcterJAL-3746 release notes and what’s new for 2.11.2 -... doc/JAL-3746_Release_2_11_2 tree | commitdiff
2021-09-21 Jim ProcterMerge branch 'doc/JAL-3746_Release_2_11_2' into develop tree | commitdiff
2021-09-16 Ben SoaresJAL-3779 Added to documentation tree | commitdiff
2021-09-15 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile... tree | commitdiff
2021-09-15 Jim ProcterJAL-3477 added help documentation for executable jar... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Help documentation updated tree | commitdiff
2020-09-17 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile... tree | commitdiff
2020-09-03 Jim ProcterJAL-3675 update sequence fetcher service documentation... tree | commitdiff
2020-08-17 Jim ProcterJAL-3490 JAL-3675 release notes, update Find dialog... tree | commitdiff
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax... tree | commitdiff
2020-08-04 Ben SoaresJAL-3477 added help documentation for executable jar... tree | commitdiff
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax... tree | commitdiff
2020-08-03 Ben SoaresJAL-3477 added help documentation for executable jar... tree | commitdiff
2020-07-29 Jim ProcterJAL-3675 mention -open argument in the command line... tree | commitdiff
2020-07-29 Jim ProcterJAL-3675 JAL-3570 JAL-3608 JAL-2983 release notes and... tree | commitdiff
2020-04-21 Jim ProcterJAL-3407 add and document ComputePeptideVariants.groovy tree | commitdiff
2020-04-21 Jim ProcterJAL-3567 JAL-3407 document sequence features report... tree | commitdiff
2020-03-16 Jim ProcterJAL-3407 JAL-3187 help documentation for virtual featur... tree | commitdiff
2020-03-16 Jim ProcterJAL-3407 JAL-3549 explicitly mention the ‘no features... tree | commitdiff
2020-02-11 Jim ProcterJAL-3376 documentation for standard attributes for... tree | commitdiff
2020-01-28 gmungocMerge branch 'feature/JAL-3121gffAttributeMap' into... tree | commitdiff
2020-01-24 gmungocJAL=3121 more data format validation/tests, help text... feature/JAL-3121gffAttributeMap tree | commitdiff
2020-01-23 gmungocJAL-3121 update help page for GFF column 9 nested attri... tree | commitdiff
2019-11-01 Ben SoaresJAL-3474 removed all .cvsignore files stored in the... improvement/JAL-3474_lots_of_.cvsignore_files tree | commitdiff
2019-07-05 Ben SoaresJAL-1544 fixed a html encoding of '<' (%lt; -> &lt... tree | commitdiff
2019-07-04 Jim ProcterJAL-3111 correct JVL appbase for 2.10.5 via getdown tree | commitdiff
2019-07-04 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2019-07-04 gmungocJAL-3111 help pages minor corrections tree | commitdiff
2019-07-04 Ben SoaresJAL-3348 fixed an internal href in help to allow building tree | commitdiff
2019-07-04 Jim ProcterJAL-3111 JAL-3348 JVL file documentation tree | commitdiff
2019-07-04 Jim ProcterJAL-3348 revised bsoares memory settings documentation... tree | commitdiff
2019-07-03 Jim ProcterMerge branch 'documentation/JAL-2843_featureFiltersForm... tree | commitdiff
2019-07-02 Jim ProcterJAL-3111 JAL-3150 revised Jalview archive documentation... tree | commitdiff
2019-07-02 Jim ProcterJAL-3111 tidied up preferences dialog documentation tree | commitdiff
2019-07-02 Jim ProcterMerge branch 'develop' into tasks/JAL-3311_removeVamsasMenu tree | commitdiff
2019-07-02 Jim ProcterJAL-3111 whats new and JAL-2738 JAL-2743 expanded help... tree | commitdiff
2019-06-24 Jim ProcterJAL-3111 formatting tree | commitdiff
2019-06-24 Jim ProcterJAL-3111 JAL-2069 JAL-2808 documentation for feature... tree | commitdiff
2019-06-17 Jim ProcterJAL-3311 remove menus and documentation relating to... tasks/JAL-3311_removeVamsasMenu tree | commitdiff
2019-04-29 gmungocJAL-3003 help page mention EPS doesn't support transparency tree | commitdiff
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Fixed help image mangling, moved... tree | commitdiff