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Fix buttons on the PaSiMap plot window
[jalview.git] / help / help /
2023-07-04 James ProcterJAL-4117 Fri June 30th release of 2.11.2.7 with Jalview... tree | commitdiff
2023-06-29 James ProcterJAL-4117 JAL-4001 plausible analytics release notes... tree | commitdiff
2023-06-07 James ProcterMerge branch 'patch/JAL-4195_cli_eps_export_npe' into... tree | commitdiff
2023-06-06 James ProcterJAL-4160 --colour can now take user defined scheme... tree | commitdiff
2023-06-01 Ben SoaresJAL-4193 JAL-4194 sessionProperties layer in Cache... tree | commitdiff
2023-06-01 Ben SoaresJAL-629 better reference text for --nousagestats tree | commitdiff
2023-05-30 Ben SoaresJAL-629 JAL-4121 Added documentation to Help docs and... tree | commitdiff
2023-05-23 Ben SoaresJAL-629 Updated help docs and fixed structure image... tree | commitdiff
2023-05-23 Ben SoaresJAL-629 Added --structureimage code and formatting... tree | commitdiff
2023-05-18 Ben SoaresJAL-629 fixes to help docs tree | commitdiff
2023-05-17 Ben SoaresJAL-629 Changed some old -arg to --arg in help docs... tree | commitdiff
2023-05-17 Ben SoaresJAL-629 tidying the help docs tree | commitdiff
2023-05-16 Ben SoaresJAL-629 Finished documentation for new command lines. tree | commitdiff
2023-05-15 Ben SoaresJAL-629 More help text tree | commitdiff
2023-05-13 Ben SoaresJAL-629 launcher shell script uses jalview.bin.Launcher... tree | commitdiff
2023-05-12 Ben SoaresJAL-629 More docs tree | commitdiff
2023-05-11 Ben SoaresJAL-629 Add some shortnames to args. Add Opt.OUTPUT... tree | commitdiff
2023-05-11 Ben SoaresJAL-629 Move clarguments documentation to default.... tree | commitdiff
2023-05-10 Ben SoaresJAL-629 More docs. Usage statement. Adjust some logging... tree | commitdiff
2023-05-09 Ben SoaresJAL-629 Add --seqid for non-subval use, make arg value... tree | commitdiff
2023-05-09 Ben SoaresJAL-629 update a subval for structureviewer in the... tree | commitdiff
2023-05-09 Ben SoaresJAL-629 more docs tree | commitdiff
2023-05-03 Ben SoaresJAL-629 a bit more documentation tree | commitdiff
2023-04-28 Ben SoaresJAL-629 Change colour scheme shortnames to something... tree | commitdiff
2023-04-27 Ben SoaresJAL-629 start of help text tree | commitdiff
2023-02-03 James ProcterMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-01-25 James ProcterMerge branch 'new_feature/JAL-4019_ambiguous_base_colou... tree | commitdiff
2023-01-24 James ProcterMerge branch 'develop' (JAL-4102 2.11.2.6 patch release... features/r2_11_2_alphafold/JAL-2349_JAL-3855 tree | commitdiff
2023-01-23 James ProcterJAL-4104 JAL-4102 update help docs with script to add... Release_2_11_2_6 tree | commitdiff
2022-11-17 Ben SoaresJAL-4019 Clarification of position on 'X' in help text tree | commitdiff
2022-11-13 Ben SoaresJAL-4019 small colour fix for X in the documentation tree | commitdiff
2022-11-13 Ben SoaresJAL-4019 attribution to Suzanne tree | commitdiff
2022-11-13 Ben SoaresJAL-4019 Help pages for Nucleotide Ambiguity colour... tree | commitdiff
2022-10-29 Jim ProcterMerge branch 'features/JAL-4061_and_JAL-4062_findselect... tree | commitdiff
2022-10-11 Ben SoaresJAL-4014 Changed gecos display names to match labels... tree | commitdiff
2022-10-07 Jim ProcterJAL-4065 update citations for Pfam and Rfam and added... tree | commitdiff
2022-09-16 Jim ProcterJAL-4062 copy highlighted region docs, new Alignment... tree | commitdiff
2022-09-15 Jim ProcterJAL-4061 JAL-4062 documentation and button labels.... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'improvement/JAL-4014_gecos_colour_schemes... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'patch/JAL-4036_uniprot_fts_legacy_endpoin... tree | commitdiff
2022-08-08 Jim ProcterJAL-4043 what’s new, updated help images and release... tree | commitdiff
2022-07-26 Ben SoaresJAL-4036 Added text to help about different number... tree | commitdiff
2022-07-25 Ben SoaresJAL-4036 updated help about new UniProt API tree | commitdiff
2022-07-01 Jim ProcterJAL-4036 JAL-4012 note about Uniprot FTS workaround... tree | commitdiff
2022-06-09 Jim ProcterJAL-4012 - JAL-4020 release notes and a bit of ‘trouble... tree | commitdiff
2022-06-09 Jim ProcterJAL-4004 add the autogenerated whatsNew.html and releas... tree | commitdiff
2022-05-12 Ben SoaresMerge branch 'develop' into issues/JAL-3553+JAL-3978... issues/JAL-3553+JAL-3978+JAL-3989+JAL-4004_merged_with_develop tree | commitdiff
2022-05-12 Ben SoaresJAL-4014 4 gecos colour schemes added to help documentation improvement/JAL-4014_gecos_colour_schemes tree | commitdiff
2022-05-11 Jim ProcterJAL-4012 JAL-4008 release notes for Jalview 2.11.2.3 tree | commitdiff
2022-05-10 Ben SoaresJAL-4004 cosmetic improvements for Java documentation... tree | commitdiff
2022-05-09 Ben SoaresJAL-4004 working templates and generated whatsNew.html... tree | commitdiff
2022-05-09 Ben SoaresJAL-4004 gradle releasesTemplates builds releases.html tree | commitdiff
2022-05-03 Ben SoaresJAL-1544 minor errors in releases.html and one missing... tree | commitdiff
2022-04-27 Ben SoaresJAL-1544 version number typo, probably copy and paste tree | commitdiff
2022-04-19 Jim ProcterJAL-3992 bump version and report updates in 2.11.2... tree | commitdiff
2022-04-18 Jim ProcterJAL-3992 fix path tree | commitdiff
2022-04-13 Jim ProcterJAL-3992 shift+arrow to jump to next gap/residue in... tree | commitdiff
2022-04-05 Jim ProcterJAL-3990 release notes and what’s new Release_2_11_2_1 tree | commitdiff
2022-04-05 Jim ProcterJAL-3990 release notes for 2.11.2.1 patch release tree | commitdiff
2022-03-31 Jim ProcterJAL-3983 release note for JAL-3985 tree | commitdiff
2022-03-30 Jim ProcterJAL-3983 known issue note for JAL-3984 tree | commitdiff
2022-03-30 Jim ProcterJAL-3983 release notes for JAL-3975 and known issue... tree | commitdiff
2022-03-30 Jim ProcterJAL-3983 update release notes for JAL-3973 tree | commitdiff
2022-03-30 Jim ProcterJAL-3983 release 2.11.2.1 date and release notes tree | commitdiff
2022-03-10 Jalview Developmen... JAL-3746 bump release date to 10th March - after UoD... tree | commitdiff
2022-03-09 Jim ProcterJAL-3746 more docs tweaking and release notes tree | commitdiff
2022-03-08 Jim ProcterJAL-3746 JAL-3841 new README and finalising 2.11.2... tree | commitdiff
2022-03-08 Jim ProcterJAL-3108 updated Ensembl client and model species names tree | commitdiff
2022-03-08 Jim ProcterJAL-3746 new release date for 2.11.2 tree | commitdiff
2022-03-08 Jim ProcterJAL-3746 JAL-3103 java.awt.Desktop.showURL method mecha... tree | commitdiff
2022-03-08 Jim ProcterMerge branch 'bug/JAL-3103_browser_launcher_problems_ma... tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 updated help doc to remove default browser... tree | commitdiff
2022-03-07 Jim ProcterJAL-3647 release notes for JAL-1842 JAL-3509 JAL-3881... tree | commitdiff
2022-03-04 Jim ProcterJAL-3647 release notes for hdpi/laf scaling JAL-3608... tree | commitdiff
2022-03-04 Jim ProcterJAL-3746 structure mapping preference docs for JAL... tree | commitdiff
2022-03-04 Jim ProcterJAL-3608 JAL-3830 tweaked the what’s new text and updat... tree | commitdiff
2022-03-04 Jim ProcterJAL-3608 JAL-3830 simplified command line docs a bit tree | commitdiff
2022-03-04 Ben SoaresJAL-3830 added command line to whatsnew and releases tree | commitdiff
2022-03-04 Ben SoaresJAL-3830 Added new command line usage to docs tree | commitdiff
2022-03-04 Ben SoaresJAL-3608 added to LaF documentation tree | commitdiff
2022-03-02 Jim ProcterJAL-3746 release notes for JAL-3867 tree | commitdiff
2022-03-02 Jim ProcterJAL-3746 release note for JAL-3907 building Jalview... tree | commitdiff
2022-03-02 Jim ProcterJAL-3746 release note for JAL-3618 Vaqua config so... tree | commitdiff
2022-03-02 Jim ProcterJAL-3594 release notes and mention jalview develop... tree | commitdiff
2022-03-02 Jim ProcterRelease notes for JAL—3728 - waiting for ben to sign... tree | commitdiff
2022-03-02 Jim ProcterJAL-3208 release notes and docs for setprop tree | commitdiff
2022-03-02 Jim ProcterJAL-3746 release notes and cli arg docs for JAL-3530 tree | commitdiff
2022-03-02 Jim ProcterJAL-3746 release notes JAL-3391 JAL-3829 improved 3dbea... tree | commitdiff
2022-03-02 Jim ProcterJAL-3746 release notes for JAL-3929 tree | commitdiff
2022-03-02 Jim ProcterJAL-3746 more what’s new tree | commitdiff
2022-03-02 Jim ProcterJAL-3746 what’s new.. tree | commitdiff
2022-03-02 Jim ProcterJAL-3746 release notes for JAL-3202 (JalviewJS) tree | commitdiff
2022-03-02 Jim ProcterJAL-3746 update release date and release notes/docs... tree | commitdiff
2022-02-28 Jim ProcterJAL-3746 more what’s new and release notes tree | commitdiff
2022-02-28 Jim ProcterJAL-3503 2.11.2.0 release notes and docs tree | commitdiff
2022-02-28 Jim ProcterJAL-3746 JAL-3551 update pymol docs and what’s new... tree | commitdiff
2022-02-28 Jim ProcterJAL-3746 document -no-annotation cli arg tree | commitdiff
2022-02-17 Jim ProcterJAL-3746 more release notes and docs: JAL-3863 JAL... tree | commitdiff
2022-02-16 Jim ProcterJAL-3746 release notes.. in progress tree | commitdiff
2022-02-15 Jim ProcterJAL-3746 update release date to later in Feb 2022 tree | commitdiff
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